mRNA_536 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|133731
Unique NamemRNA_536
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|133731 vs. uniprot
Match: A0A836CJX7_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJX7_9STRA)

HSP 1 Score: 216 bits (551), Expect = 2.020e-71
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1
Query:    1 VLHRDLKSLNVLIFNDWTATLCDFGFAELNSWTTSTMSKQGKVIGTYNWTAPEVIRDEHPKKTPPANVYSTGMVIYEILSTKVPLAEHTLLKVARAVTEQQRPSVP 318
            VLHRDLKSLNVLIFNDWTATLCDFGFAELNSWTTSTMSKQGKVIGTYNWTAPEVIRDEHPKKTPPANVYSTGMVIYEILSTKVPLAEHTLLKVARAVTEQQRPSVP
Sbjct:    1 VLHRDLKSLNVLIFNDWTATLCDFGFAELNSWTTSTMSKQGKVIGTYNWTAPEVIRDEHPKKTPPANVYSTGMVIYEILSTKVPLAEHTLLKVARAVTEQQRPSVP 106          
BLAST of jgi.p|Trimin1|133731 vs. uniprot
Match: A0A835YS63_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS63_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 3.450e-20
Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = 1
Query:    1 VLHRDLKSLNVLIFNDWTATLCDFGFAELNSWTTSTMSKQGKVIGTYNWTAPEVIRDEHPKKTPPANVYSTGMVIYEILSTKVPLAEHTLLKVARAVTEQQRPS 312
            V+HRDLKSLNVL+F    A +CDFG A +   T ST     + +GTY W APE++ D  P  TP  +VYS G+++YE+LS +VP  +   +++ RAVT   RP+
Sbjct:   85 VVHRDLKSLNVLVFAGHCAKVCDFGLARIKQ-TASTFGTAARPVGTYAWMAPEIV-DSDPY-TPADDVYSLGLIMYEVLSGRVPFHDKNGVQMMRAVTSGDRPA 185          
BLAST of jgi.p|Trimin1|133731 vs. uniprot
Match: A0A835Z1I8_9STRA (Kinase-like domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1I8_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.080e-19
Identity = 44/106 (41.51%), Postives = 66/106 (62.26%), Query Frame = 1
Query:    1 VLHRDLKSLNVLIFNDWTATLCDFGFAELNSWTTSTMSKQGKVIGTYNWTAPEVIRDEHPKKTPPANVYSTGMVIYEILSTKVPLAEHTLLKVARAVTEQQRPSVP 318
            VLHRDLKS NVL+F  W A +CDFG A        T ++   + GTY W APE++R    K T  ++VYS G+++YE++S K+P  +  L+++A  +   +RP +P
Sbjct:  147 VLHRDLKSANVLVFEGWQAKICDFGLATNFDANAHTTTRGSGMRGTYAWMAPEIMRGA--KYTTASDVYSLGLIVYEVISGKIPFQDQNLMQLALGLDRGERPLLP 250          
BLAST of jgi.p|Trimin1|133731 vs. uniprot
Match: L8GMU4_ACACA (Guanylate cyclase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GMU4_ACACA)

HSP 1 Score: 83.2 bits (204), Expect = 2.230e-16
Identity = 46/107 (42.99%), Postives = 69/107 (64.49%), Query Frame = 1
Query:    1 VLHRDLKSLNVLIFNDWTATLCDFGFAELNSWTTSTMSKQGKVIGTYNWTAPEVIR-DEHPKKTPPANVYSTGMVIYEILSTKVPLAEHTLLKVARAVTEQQRPSVP 318
            +LHRDLKS N+L+   W   + DFGFA +     +TM++     GT  WTAPE+I+ D + +K   A+VYS G+V++E+L+ KVP A+ T + VA  + + +RP VP
Sbjct: 1373 ILHRDLKSSNLLVDEAWNVKVADFGFARIKE-ENATMTR----CGTPCWTAPEIIKGDNYSEK---ADVYSFGIVMWEVLTRKVPYADQTFMSVALEILDGKRPDVP 1471          
BLAST of jgi.p|Trimin1|133731 vs. uniprot
Match: L8GK27_ACACA (Guanylate cyclase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GK27_ACACA)

HSP 1 Score: 80.9 bits (198), Expect = 1.440e-15
Identity = 44/106 (41.51%), Postives = 64/106 (60.38%), Query Frame = 1
Query:    1 VLHRDLKSLNVLIFNDWTATLCDFGFAELNSWTTSTMSKQGKVIGTYNWTAPEVIRDEHPKKTPPANVYSTGMVIYEILSTKVPLAEHTLLKVARAVTEQQRPSVP 318
            ++HRDLKS NVL+   W A + DFGFA +      TM+K     GT  W APEV+R EH   T  A++YS  ++++E+ + K+P A     K++  V E +RP+VP
Sbjct: 1354 IMHRDLKSSNVLVDESWNAKIADFGFARIKE-ENVTMTK----CGTPAWIAPEVVRREH--YTEKADIYSLSILMWEVATRKMPFAGENFAKISLEVLEGKRPAVP 1452          
BLAST of jgi.p|Trimin1|133731 vs. uniprot
Match: A0A835Z762_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z762_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 4.070e-15
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 1
Query:    1 VLHRDLKSLNVLIFNDWTATLCDFGFAELNSWTTSTMSKQGKVIGTYNWTAPEVIRDEHPKKTPPANVYSTGMVIYEILSTKVPLAE-HTLLKVARAVTEQQRPS 312
            +LH DLKS NVL+F+ W A +CD G A+++   TS   +  K+     W APE++  E+   T  A++Y  GM++YE++S KVP  E    L VA+AV   +RP+
Sbjct:  223 MLHYDLKSTNVLVFDKWRAKVCDIGLAKIDKIQTSISHRSTKMPTGAYWMAPEIM--ENKGYTAQADIYGIGMIMYEVISGKVPFEEMQDPLSVAKAVVPAERPA 325          
BLAST of jgi.p|Trimin1|133731 vs. uniprot
Match: A2FSI4_TRIVA (TKL family protein kinase n=1 Tax=Trichomonas vaginalis TaxID=5722 RepID=A2FSI4_TRIVA)

HSP 1 Score: 79.3 bits (194), Expect = 4.890e-15
Identity = 42/107 (39.25%), Postives = 66/107 (61.68%), Query Frame = 1
Query:    1 VLHRDLKSLNVLIFNDWTATLCDFGFAELNSWTTSTMSKQGKVIGTYNWTAPEVIRDEHPKKTPPANVYSTGMVIYEILSTKVPLAEHTLLKVARAV-TEQQRPSVP 318
            ++HRDLKSLN+L+ +     +CDFG +   +    TM+K+   IGT +W APE+    H   T   +VY+ GM+++E+L+  VP    T ++VA AV T+ +RP +P
Sbjct:  141 IIHRDLKSLNILLDDRLLPKICDFGISRFGNQGDDTMTKE---IGTPHWMAPEIFESNH--YTEKVDVYAYGMILWEMLTESVPFRGRTAIQVATAVVTKNERPPIP 242          
BLAST of jgi.p|Trimin1|133731 vs. uniprot
Match: A0A650DC05_9VIRU (Serine/threonine protein kinase n=3 Tax=Moumouvirus TaxID=985782 RepID=A0A650DC05_9VIRU)

HSP 1 Score: 79.3 bits (194), Expect = 5.010e-15
Identity = 43/106 (40.57%), Postives = 68/106 (64.15%), Query Frame = 1
Query:    1 VLHRDLKSLNVLIFNDWTATLCDFGFAELNSWTTSTMSKQGKVIGTYNWTAPEVIRDEHPKKTPPANVYSTGMVIYEILSTKVPLAEHTLLKVARAVTEQQRPSVP 318
            ++HRD+K +N+L+  ++ A + DFGFA + +  T TM++     GT  WTAPE+IR E  K    A+V+S G+V++E+L+ K P A H  +KV+  + E  RP +P
Sbjct: 1477 IVHRDIKPMNILVDENYNARVADFGFARIKADNT-TMTR----CGTPCWTAPEIIRGE--KYDEKADVFSFGIVMWEVLTGKEPFAGHNFMKVSLDILEGARPQIP 1575          
BLAST of jgi.p|Trimin1|133731 vs. uniprot
Match: L8HF36_ACACA (Guanylate cyclase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HF36_ACACA)

HSP 1 Score: 79.0 bits (193), Expect = 6.130e-15
Identity = 44/106 (41.51%), Postives = 65/106 (61.32%), Query Frame = 1
Query:    1 VLHRDLKSLNVLIFNDWTATLCDFGFAELNSWTTSTMSKQGKVIGTYNWTAPEVIRDEHPKKTPPANVYSTGMVIYEILSTKVPLAEHTLLKVARAVTEQQRPSVP 318
            ++HRDLKS N+L+  +W   + DFGFA L     +TM++     GT  WTAPEVIR E   +   A+VYS G++++E+++ K P A    + V+  V E +RP VP
Sbjct:  369 IIHRDLKSSNLLVDENWNVKVADFGFARLKE-DNATMTR----CGTPCWTAPEVIRGERYSEK--ADVYSFGIIMWEVMARKQPFAGRNFMGVSLDVLEGKRPQVP 467          
BLAST of jgi.p|Trimin1|133731 vs. uniprot
Match: S4RYF6_PETMA (Protein kinase domain-containing protein n=2 Tax=Petromyzon marinus TaxID=7757 RepID=S4RYF6_PETMA)

HSP 1 Score: 75.5 bits (184), Expect = 6.320e-15
Identity = 44/107 (41.12%), Postives = 68/107 (63.55%), Query Frame = 1
Query:    1 VLHRDLKSLNVLIFNDWTATLCDFGFAELNSWTTSTMSKQGKVIGTYNWTAPEVIRDEHPKKTPPANVYSTGMVIYEILSTKVPLAEHTLLKVARAVTEQ-QRPSVP 318
            V+HRDLKS NVLI +D T  +CDFG +  +  TT+       ++GT+ W APEVI+ +   +T   + YS G+V++E+L+ +VP      L+VA  V E+ +RP++P
Sbjct:   47 VIHRDLKSRNVLITSDNTLKICDFGASRFHGHTTNMT-----MVGTFPWMAPEVIQSQPISET--CDTYSFGVVLWEMLTREVPFKGFEGLQVAWLVVEKNERPTIP 146          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133731 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CJX7_9STRA2.020e-71100.00Kinase-like domain-containing protein (Fragment) n... [more]
A0A835YS63_9STRA3.450e-2046.15Kinase-like domain-containing protein (Fragment) n... [more]
A0A835Z1I8_9STRA1.080e-1941.51Kinase-like domain-containing protein n=2 Tax=Trib... [more]
L8GMU4_ACACA2.230e-1642.99Guanylate cyclase n=1 Tax=Acanthamoeba castellanii... [more]
L8GK27_ACACA1.440e-1541.51Guanylate cyclase n=1 Tax=Acanthamoeba castellanii... [more]
A0A835Z762_9STRA4.070e-1540.95Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A2FSI4_TRIVA4.890e-1539.25TKL family protein kinase n=1 Tax=Trichomonas vagi... [more]
A0A650DC05_9VIRU5.010e-1540.57Serine/threonine protein kinase n=3 Tax=Moumouviru... [more]
L8HF36_ACACA6.130e-1541.51Guanylate cyclase n=1 Tax=Acanthamoeba castellanii... [more]
S4RYF6_PETMA6.320e-1541.12Protein kinase domain-containing protein n=2 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_2contigContig_2:124160..124477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|133731|gw1.2.74.1
Descriptionprotein kinase activity
COG categoryKLT
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0515@1|root,KOG0192@2759|Eukaryota
Evalue8.02e-16
Seed ortholog5722.XP_001305064.1
Hectar predicted targeting categoryother localisation
TranscriptId134053
TrackFilteredModels1
ProteinId133731
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133731gene_536Tribonema minus UTEX_B_3156 geneContig_2 124160..124477 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_536_1exon_536_1Tribonema minus UTEX_B_3156 exonContig_2 124160..124477 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_536CDS_536Tribonema minus UTEX_B_3156 CDSContig_2 124160..124477 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133731Trimin1|133731|gw1.2.74.1Tribonema minus UTEX_B_3156 polypeptideContig_2 124160..124477 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_536 ID=mRNA_536|Name=jgi.p|Trimin1|133731|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=318bp|location=Sequence derived from alignment at Contig_2:124160..124477+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGCTGCATCGCGACCTCAAGTCGCTCAATGTGCTCATCTTCAACGACTG
GACCGCCACGCTCTGTGACTTCGGATTTGCCGAGCTGAACAGTTGGACGA
CGTCCACGATGAGCAAGCAGGGCAAGGTCATCGGAACGTACAACTGGACA
GCTCCTGAGGTCATCCGCGACGAACATCCAAAGAAGACACCGCCCGCTAA
TGTCTACAGCACAGGCATGGTCATCTATGAGATTCTGAGCACGAAGGTGC
CGTTAGCAGAGCATACGCTCTTGAAAGTTGCGCGCGCTGTGACAGAACAG
CAGCGTCCATCAGTCCCG
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protein sequence of jgi.p|Trimin1|133731

>Trimin1|133731|gw1.2.74.1 ID=Trimin1|133731|gw1.2.74.1|Name=jgi.p|Trimin1|133731|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=106bp
VLHRDLKSLNVLIFNDWTATLCDFGFAELNSWTTSTMSKQGKVIGTYNWT
APEVIRDEHPKKTPPANVYSTGMVIYEILSTKVPLAEHTLLKVARAVTEQ
QRPSVP
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mRNA from alignment at Contig_2:124160..124477+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_536 ID=mRNA_536|Name=jgi.p|Trimin1|133731|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=318bp|location=Sequence derived from alignment at Contig_2:124160..124477+ (Tribonema minus UTEX_B_3156 )
GTGCTGCATCGCGACCTCAAGTCGCTCAATGTGCTCATCTTCAACGACTG GACCGCCACGCTCTGTGACTTCGGATTTGCCGAGCTGAACAGTTGGACGA CGTCCACGATGAGCAAGCAGGGCAAGGTCATCGGAACGTACAACTGGACA GCTCCTGAGGTCATCCGCGACGAACATCCAAAGAAGACACCGCCCGCTAA TGTCTACAGCACAGGCATGGTCATCTATGAGATTCTGAGCACGAAGGTGC CGTTAGCAGAGCATACGCTCTTGAAAGTTGCGCGCGCTGTGACAGAACAG CAGCGTCCATCAGTCCCG
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Coding sequence (CDS) from alignment at Contig_2:124160..124477+

>mRNA_536 ID=mRNA_536|Name=jgi.p|Trimin1|133731|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=318bp|location=Sequence derived from alignment at Contig_2:124160..124477+ (Tribonema minus UTEX_B_3156 )
GTGCTGCATCGCGACCTCAAGTCGCTCAATGTGCTCATCTTCAACGACTG
GACCGCCACGCTCTGTGACTTCGGATTTGCCGAGCTGAACAGTTGGACGA
CGTCCACGATGAGCAAGCAGGGCAAGGTCATCGGAACGTACAACTGGACA
GCTCCTGAGGTCATCCGCGACGAACATCCAAAGAAGACACCGCCCGCTAA
TGTCTACAGCACAGGCATGGTCATCTATGAGATTCTGAGCACGAAGGTGC
CGTTAGCAGAGCATACGCTCTTGAAAGTTGCGCGCGCTGTGACAGAACAG
CAGCGTCCATCAGTCCCG
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