mRNA_5342 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|55676
Unique Name	mRNA_5342
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|55676 vs. uniprot
Match: A0A835YZ37_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ37_9STRA)

HSP 1 Score: 316 bits (810), Expect = 5.690e-100
Identity = 364/364 (100.00%), Postives = 364/364 (100.00%), Query Frame = 1

Query:  433 MHEQRSLPLSIRAVCRRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLPHDYARRHEPPRRTPAACSCSDVRGVRQRCRLAGGAAVERHVAGVAAGVAPRARERXXXXXXXXXXXXQRRAARASVRLPLNAKHRQQVHLLETAHLLQVLXXXXXXXXXXXXXXXXXCVEASLNRRHRHVWAAAFEQKRRGAIPCVHTQLRLPASAAVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHPPRPLNPATPSPAASRAPPAQESPCAVARPQSRDLAAXXXXXXXXXXXXXXLHQTANS 1524
            MHEQRSLPLSIRAVCRRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLPHDYARRHEPPRRTPAACSCSDVRGVRQRCRLAGGAAVERHVAGVAAGVAPRARERXXXXXXXXXXXXQRRAARASVRLPLNAKHRQQVHLLETAHLLQVLXXXXXXXXXXXXXXXXXCVEASLNRRHRHVWAAAFEQKRRGAIPCVHTQLRLPASAAVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHPPRPLNPATPSPAASRAPPAQESPCAVARPQSRDLAAXXXXXXXXXXXXXXLHQTANS
Sbjct:    1 MHEQRSLPLSIRAVCRRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLPHDYARRHEPPRRTPAACSCSDVRGVRQRCRLAGGAAVERHVAGVAAGVAPRARERXXXXXXXXXXXXQRRAARASVRLPLNAKHRQQVHLLETAHLLQVLXXXXXXXXXXXXXXXXXCVEASLNRRHRHVWAAAFEQKRRGAIPCVHTQLRLPASAAVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHPPRPLNPATPSPAASRAPPAQESPCAVARPQSRDLAAXXXXXXXXXXXXXXLHQTANS 364

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|55676 vs. uniprot

BLAST of jgi.p|Trimin1|55676 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YZ37_9STRA	5.690e-100	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_30	contig	Contig_30:266485..268265 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|55676\|CE55675_174
Hectar predicted targeting category	signal anchor
TranscriptId	55998
Track	FilteredModels1
ProteinId	55676

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|55676	gene_5342	Tribonema minus UTEX_B_3156	gene	Contig_30 266485..268265 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_5342_2	exon_5342_2	Tribonema minus UTEX_B_3156	exon	Contig_30 266485..267166 -
exon_5342_1	exon_5342_1	Tribonema minus UTEX_B_3156	exon	Contig_30 267247..268265 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_5342	UTR3_5342	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_30 266485..266658 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_5342	CDS_5342	Tribonema minus UTEX_B_3156	CDS	Contig_30 267247..267833 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_5342	UTR5_5342	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_30 267834..268265 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|55676	Trimin1\|55676\|CE55675_174	Tribonema minus UTEX_B_3156	polypeptide	Contig_30 266659..267833 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_30:266485..268265-
coding sequence from alignment at Contig_30:266485..268265-

spliced messenger RNA

>mRNA_5342 ID=mRNA_5342|Name=jgi.p|Trimin1|55676|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1701bp|location=Sequence derived from alignment at Contig_30:266485..268265- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGATGACAAGTGCATTTGGGGATGGTGATGGCACCACTCTACGTCTCAA
CGTGTGGTGACCCCGCGCATGGCGGCTGCGGCGGCATGGCGTGCATACAT
TGAGCCCGGCAGCTCCAGTGCGTCTACTACATAAACCCTACAGTCAGCCG
CTTTGCGAGCATGGGCACTCTGCAACGGCGACGGCAGGTGCGGCAAGAAA
TTTCTCATGCGCAACTTCCGAGTCCCCTTCTTGACTCGCTGTCTTCTGTT
CATAGGAGTCGGGGAGTGGAGGGTCACAGTGGCACAGGGTCTCGACCTGA
ATAGACTATCCGCAGCTCGAAACACTATCGCCATGAAAGCCTGGCACGCC
ATATCACCGGGTAAAAGCAAGCACCGCAGGTTGCTGTGCCCGCTCAGCTT
CCTCCCTGCGGCGCGCCCCTAATGTTGAGCATATGCATGAGCAGCGCAGC
CTGCCGCTGAGCATCCGCGCTGTTTGCCGGCGCGCCGCCGCTGCCGCCGC
CGCCGCCGCCGTCGTGATACCGCAGCGCGCCTCCGGCCACAAACGTCTGC
TGCTGCTGCTGGTGCTGCTGCTGGTGGTGCTGGTGCTGCTGCTGATGGTG
CCGCTGCTGGGGGTAGTGCTGATGCTGTGGCGGCGACATGTGGTGGTTGG
CGCCGCCGCCGCTGCCGCCGCCGCCGCCGCCGCCCCCCTGCCGCATGACT
ACGCGCGTCGGCACGAGCCCCCGAGGCGTACCCCTGCTGCTTGCAGCTGC
AGCGATGTGCGCGGCGTGCGGCAGCGCTGCCGCCTTGCTGGCGGAGCCGC
GGTCGAGCGCCATGTCGCTGGGGTTGCCGCCGGAGTTGCGCCGCGCGCGC
GTGAGCGGCGACGAGAACGCAAACTTCTGCTGCTGCTGCTGCTGCAGCGG
CGCGCCGCCCGCGCCTCCGTTCGCCTGCCCCTGAATGCCAAGCACCGCCA
GCAGGTCCACCTCCTGGAGACTGCGCATCTGCTGCAGGTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTTGCTGCTGCTGCTGCTGCTGCTGCATGTGTG
GAGGCATCGCTGAACCGCCGCCACCGCCATGTGTGGGCTGCCGCATTTGA
GCAGAAGAGAAGGGGGGCGATCCCCTGTGTGCATACGCAGCTCCGTCTAC
CTGCATCTGCGGCGGTGCGGCGCCGGCTGCCGCCATCATCCGCTGCTGCT
GATAGTGCTGCTGCTGCTGCTGCTGCTGCGGCGTCGCATGCGCCTGCTGC
TGCGGCGGTGGCAGCGCCAGCTGCCGCGTCTGGTGCTGCTGCTGCAGCGA
GTAGTGCGGCGGCGCGCCATCGCCATACTCGCCGCCGCTGCTGCCAGCAC
CCCCCGCGCCCACTGAATCCCGCAACTCCATCGCCTGCTGCGAGTAGGGC
GCCGCCGGCGCAGGAGAGCCCCTGTGCTGTGGCACGGCCCCAATCACGAG
ACCTGGCGGCGGCGGCGGTGGCGGCGGCGGCGGCGGCGGTGGTGCCGCCG
CCCCTCCACCAAACAGCAAATTCTTGAGCTGGTCCGTCTGCGTCCGCTCC
GCGCCGTGCGACGGGTGCAAGTGCGGCTGCGCAGCAGGGCGCGCTGCCGC
CGCCGCCGCCGCCACCGCCCCATGCCCGTCTCCCCCTCCTGACCACAGAC
CGAGCTTGGACACCGCCGGCGGCGAGTCCGTCACCACCTGCTTGCCTGTC
A

protein sequence of jgi.p|Trimin1|55676

>Trimin1|55676|CE55675_174 ID=Trimin1|55676|CE55675_174|Name=jgi.p|Trimin1|55676|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=365bp
MHEQRSLPLSIRAVCRRAAAAAAAAAVVIPQRASGHKRLLLLLVLLLVVL
VLLLMVPLLGVVLMLWRRHVVVGAAAAAAAAAAAPLPHDYARRHEPPRRT
PAACSCSDVRGVRQRCRLAGGAAVERHVAGVAAGVAPRARERRRERKLLL
LLLLQRRAARASVRLPLNAKHRQQVHLLETAHLLQVLLLLLLLLLLAAAA
AAAACVEASLNRRHRHVWAAAFEQKRRGAIPCVHTQLRLPASAAVRRRLP
PSSAAADSAAAAAAAAASHAPAAAAVAAPAAASGAAAAASSAAARHRHTR
RRCCQHPPRPLNPATPSPAASRAPPAQESPCAVARPQSRDLAAAAVAAAA
AAVVPPPLHQTANS*

mRNA from alignment at Contig_30:266485..268265-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5342 ID=mRNA_5342|Name=jgi.p|Trimin1|55676|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1781bp|location=Sequence derived from alignment at Contig_30:266485..268265- (Tribonema minus UTEX_B_3156 )
GTGATGACAAGTGCATTTGGGGATGGTGATGGCACCACTCTACGTCTCAA
CGTGTGGTGACCCCGCGCATGGCGGCTGCGGCGGCATGGCGTGCATACAT
TGAGCCCGGCAGCTCCAGTGCGTCTACTACATAAACCCTACAGTCAGCCG
CTTTGCGAGCATGGGCACTCTGCAACGGCGACGGCAGGTGCGGCAAGAAA
TTTCTCATGCGCAACTTCCGAGTCCCCTTCTTGACTCGCTGTCTTCTGTT
CATAGGAGTCGGGGAGTGGAGGGTCACAGTGGCACAGGGTCTCGACCTGA
ATAGACTATCCGCAGCTCGAAACACTATCGCCATGAAAGCCTGGCACGCC
ATATCACCGGGTAAAAGCAAGCACCGCAGGTTGCTGTGCCCGCTCAGCTT
CCTCCCTGCGGCGCGCCCCTAATGTTGAGCATATGCATGAGCAGCGCAGC
CTGCCGCTGAGCATCCGCGCTGTTTGCCGGCGCGCCGCCGCTGCCGCCGC
CGCCGCCGCCGTCGTGATACCGCAGCGCGCCTCCGGCCACAAACGTCTGC
TGCTGCTGCTGGTGCTGCTGCTGGTGGTGCTGGTGCTGCTGCTGATGGTG
CCGCTGCTGGGGGTAGTGCTGATGCTGTGGCGGCGACATGTGGTGGTTGG
CGCCGCCGCCGCTGCCGCCGCCGCCGCCGCCGCCCCCCTGCCGCATGACT
ACGCGCGTCGGCACGAGCCCCCGAGGCGTACCCCTGCTGCTTGCAGCTGC
AGCGATGTGCGCGGCGTGCGGCAGCGCTGCCGCCTTGCTGGCGGAGCCGC
GGTCGAGCGCCATGTCGCTGGGGTTGCCGCCGGAGTTGCGCCGCGCGCGC
GTGAGCGGCGACGAGAACGCAAACTTCTGCTGCTGCTGCTGCTGCAGCGG
CGCGCCGCCCGCGCCTCCGTTCGCCTGCCCCTGAATGCCAAGCACCGCCA
GCAGGTCCACCTCCTGGAGACTGCGCATCTGCTGCAGGTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCAGATGGTAGTACTGGTCATACGACGGCGG
TGGCGGCGGAGGCGGCGGCGGTGGCTGTTGGCGATACATGTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCATGTGTGGAGGCATCGCTGAACCGCCG
CCACCGCCATGTGTGGGCTGCCGCATTTGAGCAGAAGAGAAGGGGGGCGA
TCCCCTGTGTGCATACGCAGCTCCGTCTACCTGCATCTGCGGCGGTGCGG
CGCCGGCTGCCGCCATCATCCGCTGCTGCTGATAGTGCTGCTGCTGCTGC
TGCTGCTGCGGCGTCGCATGCGCCTGCTGCTGCGGCGGTGGCAGCGCCAG
CTGCCGCGTCTGGTGCTGCTGCTGCAGCGAGTAGTGCGGCGGCGCGCCAT
CGCCATACTCGCCGCCGCTGCTGCCAGCACCCCCCGCGCCCACTGAATCC
CGCAACTCCATCGCCTGCTGCGAGTAGGGCGCCGCCGGCGCAGGAGAGCC
CCTGTGCTGTGGCACGGCCCCAATCACGAGACCTGGCGGCGGCGGCGGTG
GCGGCGGCGGCGGCGGCGGTGGTGCCGCCGCCCCTCCACCAAACAGCAAA
TTCTTGAGCTGGTCCGTCTGCGTCCGCTCCGCGCCGTGCGACGGGTGCAA
GTGCGGCTGCGCAGCAGGGCGCGCTGCCGCCGCCGCCGCCGCCACCGCCC
CATGCCCGTCTCCCCCTCCTGACCACAGACCGAGCTTGGACACCGCCGGC
GGCGAGTCCGTCACCACCTGCTTGCCTGTCA

Coding sequence (CDS) from alignment at Contig_30:266485..268265-

>mRNA_5342 ID=mRNA_5342|Name=jgi.p|Trimin1|55676|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1095bp|location=Sequence derived from alignment at Contig_30:266485..268265- (Tribonema minus UTEX_B_3156 )
ATGCATGAGCAGCGCAGCCTGCCGCTGAGCATCCGCGCTGTTTGCCGGCG
CGCCGCCGCTGCCGCCGCCGCCGCCGCCGTCGTGATACCGCAGCGCGCCT
CCGGCCACAAACGTCTGCTGCTGCTGCTGGTGCTGCTGCTGGTGGTGCTG
GTGCTGCTGCTGATGGTGCCGCTGCTGGGGGTAGTGCTGATGCTGTGGCG
GCGACATGTGGTGGTTGGCGCCGCCGCCGCTGCCGCCGCCGCCGCCGCCG
CCCCCCTGCCGCATGACTACGCGCGTCGGCACGAGCCCCCGAGGCGTACC
CCTGCTGCTTGCAGCTGCAGCGATGTGCGCGGCGTGCGGCAGCGCTGCCG
CCTTGCTGGCGGAGCCGCGGTCGAGCGCCATGTCGCTGGGGTTGCCGCCG
GAGTTGCGCCGCGCGCGCGTGAGCGGCGACGAGAACGCAAACTTCTGCTG
CTGCTGCTGCTGCAGCGGCGCGCCGCCCGCGCCTCCGTTCGCCTGCCCCT
GAATGCCAAGCACCGCCAGCAGGTCCACCTCCTGGAGACTGCGCATCTGC
TGCAGGTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTGCTGCTGCTGCT
GCTGCTGCTGCATGTGTGGAGGCATCGCTGAACCGCCGCCACCGCCATGT
GTGGGCTGCCGCATTTGAGCAGAAGAGAAGGGGGGCGATCCCCTGTGTGC
ATACGCAGCTCCGTCTACCTGCATCTGCGGCGGTGCGGCGCCGGCTGCCG
CCATCATCCGCTGCTGCTGATAGTGCTGCTGCTGCTGCTGCTGCTGCGGC
GTCGCATGCGCCTGCTGCTGCGGCGGTGGCAGCGCCAGCTGCCGCGTCTG
GTGCTGCTGCTGCAGCGAGTAGTGCGGCGGCGCGCCATCGCCATACTCGC
CGCCGCTGCTGCCAGCACCCCCCGCGCCCACTGAATCCCGCAACTCCATC
GCCTGCTGCGAGTAGGGCGCCGCCGGCGCAGGAGAGCCCCTGTGCTGTGG
CACGGCCCCAATCACGAGACCTGGCGGCGGCGGCGGTGGCGGCGGCGGCG
GCGGCGGTGGTGCCGCCGCCCCTCCACCAAACAGCAAATTCTTGA