mRNA_5308 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348679
Unique NamemRNA_5308
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|348679 vs. uniprot
Match: A0A835Z091_9STRA (Fucoxanthin chlorophyll a/c binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z091_9STRA)

HSP 1 Score: 429 bits (1102), Expect = 7.900e-150
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 1 
Query:    1 MMQAILLLSAAAGASAFVVPSSFAGSQLAVRSASSTSMAMSFKEEMAGATAPFGFFDPVGFSSDADDKKVKKFREAEVKHGRVAMLAFLGLLIQENFHPFFEQGEADLGPASFHLQQVDDKFPLLSLTLFFGIGLVESFTIGRGWSKRDFEDNGFVANLNEEYLPGDLKFDPLNLKPKDAAGLKEMQTKELNNGRLAMIATLGIWGQELVDGQTIAGHFSS 663
            MMQAILLLSAAAGASAFVVPSSFAGSQLAVRSASSTSMAMSFKEEMAGATAPFGFFDPVGFSSDADDKKVKKFREAEVKHGRVAMLAFLGLLIQENFHPFFEQGEADLGPASFHLQQVDDKFPLLSLTLFFGIGLVESFTIGRGWSKRDFEDNGFVANLNEEYLPGDLKFDPLNLKPKDAAGLKEMQTKELNNGRLAMIATLGIWGQELVDGQTIAGHFSS
Sbjct:    1 MMQAILLLSAAAGASAFVVPSSFAGSQLAVRSASSTSMAMSFKEEMAGATAPFGFFDPVGFSSDADDKKVKKFREAEVKHGRVAMLAFLGLLIQENFHPFFEQGEADLGPASFHLQQVDDKFPLLSLTLFFGIGLVESFTIGRGWSKRDFEDNGFVANLNEEYLPGDLKFDPLNLKPKDAAGLKEMQTKELNNGRLAMIATLGIWGQELVDGQTIAGHFSS 221
[Close]
BLAST of jgi.p|Trimin1|348679 vs. uniprot
Match: A0A836CA40_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA40_9STRA)

HSP 1 Score: 231 bits (589), Expect = 1.600e-71
Identity = 123/228 (53.95%), Postives = 164/228 (71.93%), Query Frame = 1 
Query:    4 MQAILL--LSAAAGASAFVVPSSFAGSQLAVRSASSTSMAMSF---KEEMAGATAPFGFFDPVGFSSDADDKKVKKFREAEVKHGRVAMLAFLGLLIQENFHPFFEQGEADLGPASFHLQQVDDKFPLLSLTLFFGIGLVESFTIGRGWSKRDFEDNG----FVANLNEEYLPGDLKFDPLNLKPKDAAGLKEMQTKELNNGRLAMIATLGIWGQELVDGQTIAGHFS 660
            MQA L+  L+ A+GA+AFV PSSF G  +A    SST+++MS     E M+GAT+P  ++DP+GF+S  DD++++K+REAE+KHGRVAMLA LG+++QENFHPFF     D+GPA+FHLQ+  ++F  L   L  G+GLVE  TI +GWSK+D+++ G    FVANL E+Y PGDL FDPL L P +      ++ KELNNGRLAMIA  G+W QELVD  T+A HF+
Sbjct:    1 MQATLITALACASGAAAFVAPSSFNGVAVANSVKSSTTLSMSEIKPLENMSGATSPVPYWDPLGFASKVDDQELQKYREAELKHGRVAMLAALGMIVQENFHPFFNTAGRDIGPAAFHLQKTMEEFSFLPFALVLGVGLVELTTINKGWSKQDYKETGLGAGFVANLKEDYFPGDLGFDPLGLYPTNPRERTNIRNKELNNGRLAMIAIWGMWAQELVDHLTLAEHFA 228
[Close]
BLAST of jgi.p|Trimin1|348679 vs. uniprot
Match: A0A835YMD9_9STRA (Fucoxanthin chlorophyll a/c protein, LI818 clade n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMD9_9STRA)

HSP 1 Score: 218 bits (555), Expect = 1.200e-66
Identity = 116/224 (51.79%), Postives = 153/224 (68.30%), Query Frame = 1 
Query:    7 QAILLLSAAAGASAFVVPSSFAGSQLAVRSASSTSMAMSFK--EEMAGATAPFGFFDPVGFSSDADDKKVKKFREAEVKHGRVAMLAFLGLLIQENFHPFFEQGEADLGPASFHLQQVDDKFPLLSLTLFFGIGLVESFTIGRGWSKRDFEDNG----FVANLNEEYLPGDLKFDPLNLKPKDAAGLKEMQTKELNNGRLAMIATLGIWGQELVDGQTIAGHFS 660
            Q I  L+  AGASAF   SSF G+ +A R   +++M M     EEM+GATAP  ++DP G ++  DD++++K+REAE+KHGRVAMLA LG+++QENFHPFF     D+GPA+FHLQ+   +F  L L L  G+G VE  TI +GWS+ D+++ G    FVANL E+Y PGDL FDPL L P        ++ KELNNGRLAMIA  G+W QELVDG  +A H++
Sbjct:    5 QVIAALACVAGASAF--QSSFKGAAVASRVKPTSTMTMQINSLEEMSGATAPVPYWDPAGLAAKVDDQELQKYREAELKHGRVAMLATLGMVVQENFHPFFGTAGRDIGPAAFHLQETMKEFDALPLALVCGVGAVEFLTIDKGWSRSDYKETGLGAGFVANLKEDYFPGDLGFDPLGLYPSSPEERTNIRNKELNNGRLAMIAIWGMWAQELVDGLPLAEHYA 226
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BLAST of jgi.p|Trimin1|348679 vs. uniprot
Match: A0A835ZAU2_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAU2_9STRA)

HSP 1 Score: 216 bits (550), Expect = 1.160e-65
Identity = 114/229 (49.78%), Postives = 160/229 (69.87%), Query Frame = 1 
Query:    1 MMQAILLLSAAAGASAFVVPSSFAGSQLAVRSASSTSMAMSFKEE-----MAGATAPFGFFDPVGFSSDADDKKVKKFREAEVKHGRVAMLAFLGLLIQE-NFHPFFEQGEADLGPASFHLQQVDDKFPLLSLTLFFGIGLVESFTIGRGWSKRDFEDNG----FVANLNEEYLPGDLKFDPLNLKPKDAAGLKEMQTKELNNGRLAMIATLGIWGQELVDGQTIAGHF 657
            M  + ++ +A  GA++  VP+    + ++  S+S+  MAM   E+     M+GATAP  F+DP+GF++  D ++++K+REAE+KHGRVAMLA LG+++QE  FHPFF    ADLGPA+FHLQ+V   +P L L L  G+G VESFTI +GWSK+D++ +G    FVANL E+Y PGDL FDPL L P+   G + ++ KE+NNGRLAMIA  G+W QELVDG ++  H+
Sbjct:    1 MKASCIVAAATIGAASAFVPAGQTCTGVSRASSSAMKMAMDPDEQYSLQNMSGATAPVPFWDPLGFAAQVDGQELQKYREAELKHGRVAMLACLGMIVQEAGFHPFFGTAGADLGPAAFHLQKVGVNYPTLPLLLLVGVGAVESFTINKGWSKQDYKSSGLGEGFVANLKEDYFPGDLGFDPLGLYPQSEEGRRSIRNKEINNGRLAMIAIWGMWAQELVDGMSLYEHY 229
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BLAST of jgi.p|Trimin1|348679 vs. uniprot
Match: D8LTR4_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTR4_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 6.600e-56
Identity = 98/179 (54.75%), Postives = 120/179 (67.04%), Query Frame = 1 
Query:  124 FKEEMAGATAPFGFFDPVGFSSDADDKKVKKFREAEVKHGRVAMLAFLGLLIQENFHPFFEQGEADLGPASFHLQQVDDKFPLLSLTLFFGIGLVESFTIGRGWSKRDFEDNGFVANLNEEYLPGDLKFDPLNLKPKDAAGLKEMQTKELNNGRLAMIATLGIWGQELVDGQTIAGHFS 660
            + + +AGA+APF +FDP+  SS      VKKFRE+E+KH RVAMLAFLG+ +QE  HP FE G  D+GPA  H Q V + FPL+   L   +G+ E   I  GW K+  +    VA+L  +Y PG   FDPL L PKD AG K M TKELNNGRLAMIAT+G+W QELVDG+TI GH S
Sbjct:   62 YVKTLAGASAPFPYFDPLEISSKFRAIDVKKFRESEIKHARVAMLAFLGMFVQELAHPLFENGGKDIGPAIVHFQAVTNYFPLMPALLLIIVGIFEGNNIYVGWVKQPLKLG--VADLKPDYEPGSFGFDPLGLYPKDEAGKKAMMTKELNNGRLAMIATIGVWAQELVDGKTILGHLS 238
[Close]
BLAST of jgi.p|Trimin1|348679 vs. uniprot
Match: A0A6S9JIV9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9JIV9_HETAK)

HSP 1 Score: 171 bits (432), Expect = 1.270e-48
Identity = 102/201 (50.75%), Postives = 126/201 (62.69%), Query Frame = 1 
Query:   28 AAAGASAFVVPSSFAGSQLAVRSASSTSMAMSFKEEMAGATAPFGFFDPVGFSSDADDKKVKKFREAEVKHGRVAMLAFLGLLIQENFHPFFEQGEADLGPASFHLQQVDDKFPLLSLTLFFGIGLVESFTIGRGWSKRDFEDNGFVANLNEEYLPGDLKFDPLNLKPKDAAGLKEMQTKELNNGRLAMIATLGIWGQELV 630
            A +G SAFV  S+  G +   +S+SS  MA+   E+MAG + P GFFDP  FS  A++  +KKFREAE+KHGRVAMLA LG L+ +N       G A  GPA    QQ D   P   + +   IG++E  TI  GW   D     F A+L  +Y+PGDL FDPLNLKPK +  LK MQTKELNNGRLAMIA +G+  QELV
Sbjct:   11 AVSGTSAFVPQSN--GLKTLAKSSSSLKMAV---EDMAGVSGPLGFFDPFNFSKGAEESTIKKFREAEIKHGRVAMLAALGFLVGDNI-----SGWAGSGPALTQFQQADAVLPYFWVIVLSIIGVIEGRTILTGWESPDEAAGKFPADLKSDYIPGDLGFDPLNLKPKSSEELKIMQTKELNNGRLAMIAIVGMIVQELV 201
[Close]
BLAST of jgi.p|Trimin1|348679 vs. uniprot
Match: A0A7R9U0X8_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U0X8_9STRA)

HSP 1 Score: 167 bits (424), Expect = 2.870e-47
Identity = 90/167 (53.89%), Postives = 115/167 (68.86%), Query Frame = 1 
Query:  142 GATAPFGFFDPVGFSSDADDKKVKKFREAEVKHGRVAMLAFLGLLIQENFHPFFEQGEADLGPASFHLQQVDDKFPLLSLTLFFGIGLVESFTIGRGW-SKRDFEDNGF-VANLNEEYLPGDLKFDPLNLKPKDAAGLKEMQTKELNNGRLAMIATLGIWGQELVDG 636
            G+++PF  FDP+G S+D DD  +KK++EAE+KHGR+AMLA LG+L+QE+FHP F  G A  GPA F  QQVD+ +PL  +     +  VE  TI +GW S R+ +  G  VA L E+Y PGD+ FDPL L PKD AG  EM+TKELN+ RLAMI   G+  QELV G
Sbjct:   38 GSSSPFPGFDPLGLSTDLDDMTLKKYQEAELKHGRIAMLAALGILVQESFHPLF--GGAISGPAIFEFQQVDNVYPLFWVAFGTAVAFVEGTTINQGWESIRETKARGADVAGLKEDYTPGDIGFDPLGLCPKDEAGFAEMRTKELNHCRLAMIGVAGMVAQELVLG 202
[Close]
BLAST of jgi.p|Trimin1|348679 vs. uniprot
Match: K8YPR7_NANGC (Light harvesting complex protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YPR7_NANGC)

HSP 1 Score: 166 bits (419), Expect = 5.530e-47
Identity = 91/174 (52.30%), Postives = 117/174 (67.24%), Query Frame = 1 
Query:  139 AGATAPFGFFDPVGFSSDADDKKVKKFREAEVKHGRVAMLAFLGLLIQENFHPFF--EQGEADLGPASFHLQQVDDKFPLLSLTLFFGIGLVESFTIGRGW-SKRDFEDNG-FVANLNEEYLPGDLKFDPLNLKPK-DAAGLKEMQTKELNNGRLAMIATLGIWGQELVDGQTI 645
            AGATAPFGFFDP+G S+    K++KK+RE+EVKHGRVAMLA +G+L+QE F PF+  E G +D GPA FH Q+++   P L + L  GI +VESFTI +GW S  +    G  +A L + Y+ GDL+FDPL L P  D       ++KELNNGRLAMIA  G+  QEL+    I
Sbjct:    3 AGATAPFGFFDPIGLSTGKTFKELKKWRESEVKHGRVAMLAVVGVLLQEVFAPFYNPETGSSDPGPAIFHFQELEALNPFLFVFLILGIAIVESFTISKGWESPEEMRAGGNTIAGLRDTYVAGDLEFDPLGLAPTADVDAFINQRSKELNNGRLAMIAWAGMVVQELISNSKI 176
[Close]
BLAST of jgi.p|Trimin1|348679 vs. uniprot
Match: A0A7S3YG15_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YG15_HETAK)

HSP 1 Score: 162 bits (410), Expect = 6.160e-45
Identity = 84/176 (47.73%), Postives = 110/176 (62.50%), Query Frame = 1 
Query:  118 MSFKEEMAGATAPFGFFDPVGFSSDADDKKVKKFREAEVKHGRVAMLAFLGLLIQENFHPFFEQGEADLGPASFHLQQVDDKFPLLSLTLFFGIGLVESFTIGRGWSKRDFEDNGFVANLNEEYLPGDLKFDPLNLKPKDAAGLKEMQTKELNNGRLAMIATLGIWGQELVDGQTI 645
            M+  E++ G   P GFFDP+G S   ++  +KKFREAE+KHGR+AMLA +G+L+ E F+P F+ G+  LG   +H QQ D   P   + + F I L+E  TI   W   +   N  +A+L  +Y PGDL FDPL L P D A L EM+TKEL NGRLAM+   GI  QEL+ GQ I
Sbjct:   55 MALVEDLPGVLPPVGFFDPLGISQGKNENAIKKFREAELKHGRIAMLASVGILLAERFNPLFD-GKI-LGAGIYHFQQADQLLPYFWVIVLFAIALIEGQTILTAWDSVEDSQNKPIADLRADYEPGDLGFDPLGLAPSDPAALAEMRTKELQNGRLAMLGIAGIVAQELLTGQPI 228
[Close]
BLAST of jgi.p|Trimin1|348679 vs. uniprot
Match: A0A0G4HNN3_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HNN3_9ALVE)

HSP 1 Score: 160 bits (405), Expect = 9.390e-44
Identity = 83/167 (49.70%), Postives = 106/167 (63.47%), Query Frame = 1 
Query:  130 EEMAGATAPFGFFDPVGFSSDADDKKVKKFREAEVKHGRVAMLAFLGLLIQENFHPFFEQGEADLGPASFHLQQVDDKFPLLSLTLFFGIGLVESFTIGRGWSKRDFEDNGF-VANLNEEYLPGDLKFDPLNLKPKDAAGLKEMQTKELNNGRLAMIATLGIWGQEL 627
            E++ G + PFG+FDP+ F     +K +KK+ EAE+KHGR+AMLA +G L+QE FHP      A    A    Q ++DK+P     +   IGL+E +TI +GW   D    GF  ANL   Y PGDL FDPLNL PKDA G K M TKE NNGRLAM+A +G+W QE+
Sbjct:   97 EKLPGVSGPFGYFDPLSFGMGTPEK-IKKWTEAEIKHGRLAMLASVGYLVQEFFHPLQPDAPAR---ALTQWQYIEDKWPQFDEIVLVVIGLIEGYTIAKGWQSPDEHSGGFFAANLKSSYEPGDLGFDPLNLLPKDAEGRKSMMTKERNNGRLAMLAIIGMWLQEI 259
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348679 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z091_9STRA7.900e-150100.00Fucoxanthin chlorophyll a/c binding protein n=1 Ta... [more]
A0A836CA40_9STRA1.600e-7153.95Light harvesting complex protein n=2 Tax=Tribonema... [more]
A0A835YMD9_9STRA1.200e-6651.79Fucoxanthin chlorophyll a/c protein, LI818 clade n... [more]
A0A835ZAU2_9STRA1.160e-6549.78Light harvesting complex protein n=1 Tax=Tribonema... [more]
D8LTR4_ECTSI6.600e-5654.75Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A6S9JIV9_HETAK1.270e-4850.75Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9U0X8_9STRA2.870e-4753.89Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
K8YPR7_NANGC5.530e-4752.30Light harvesting complex protein n=2 Tax=Monodopsi... [more]
A0A7S3YG15_HETAK6.160e-4547.73Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0G4HNN3_9ALVE9.390e-4449.70Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_30contigContig_30:66630..70447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348679|estExt_Genemark1.C_Ctg_300008
Preferred nameLhcx2
DescriptionChlorophyll A-B binding protein
COG categoryU
Max annot lvl2759|Eukaryota
EggNOG OGs2A0A8@1|root,2RXY6@2759|Eukaryota
Evalue3.21e-58
Seed ortholog2880.D8LTR4
Hectar predicted targeting categorychloroplast
TranscriptId349001
TrackFilteredModels1
ProteinId348679
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348679gene_5308Tribonema minus UTEX_B_3156 geneContig_30 66630..70447 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348679Trimin1|348679|estExt_Genemark1.C_Ctg_300008Tribonema minus UTEX_B_3156 polypeptideContig_30 66630..70126 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5308_1exon_5308_1Tribonema minus UTEX_B_3156 exonContig_30 66630..66721 +
exon_5308_2exon_5308_2Tribonema minus UTEX_B_3156 exonContig_30 67375..67564 +
exon_5308_3exon_5308_3Tribonema minus UTEX_B_3156 exonContig_30 68260..68430 +
exon_5308_4exon_5308_4Tribonema minus UTEX_B_3156 exonContig_30 68966..69025 +
exon_5308_5exon_5308_5Tribonema minus UTEX_B_3156 exonContig_30 69577..69676 +
exon_5308_6exon_5308_6Tribonema minus UTEX_B_3156 exonContig_30 70074..70447 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5308CDS_5308Tribonema minus UTEX_B_3156 CDSContig_30 66630..66721 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_5308UTR3_5308Tribonema minus UTEX_B_3156 three_prime_UTRContig_30 70127..70447 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5308 ID=mRNA_5308|Name=jgi.p|Trimin1|348679|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=987bp|location=Sequence derived from alignment at Contig_30:66630..70447+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCAGGCGATCCTCCTTCTCTCAGCTGCCGCAGGCGCCAGCGCCTT
CGTCGTGCCCTCCAGCTTCGCTGGCAGCCAGCTGGCAGTAAGGTCTGCGA
GCTCCACCAGCATGGCCATGAGCTTCAAGGAGGAGATGGCTGGTGCCACC
GCCCCCTTTGGCTTCTTTGACCCCGTCGGCTTCTCTTCTGACGCCGACGA
CAAGAAGGTCAAGAAGTTCCGCGAGGCGGAGGTGAAGCACGGCCGTGTTG
CCATGCTCGCCTTCCTCGGCCTCCTCATCCAGGAGAACTTCCACCCCTTC
TTTGAGCAGGGCGAGGCCGACCTGGGCCCGGCCTCCTTCCACTTGCAGCA
GGTGGACGACAAGTTCCCCCTGCTGTCCCTCACTCTGTTCTTCGGCATCG
GCCTGGTGGAGTCCTTCACCATTGGGCGCGGGTGGTCCAAGAGGGACTTC
GAGGACAACGGCTTCGTCGCCAACCTCAACGAGGAATACCTCCCCGGGGA
CCTGAAGTTCGACCCGCTTAACCTCAAGCCCAAGGACGCCGCTGGCCTGA
AGGAGATGCAGACCAAGGAGCTCAACAACGGCCGCCTGGCCATGATCGCC
ACCCTCGGCATCTGGGGACAGGAGCTCGTGGACGGCCAGACCATTGCTGG
CCACTTCAGCTCCTAAGCGGATGCCCACCTGTAACAGCCAGTTCAAGCCT
TTCAGAAATTTTGCAGATTTAGTCTAGTTACCTCTGGAGTCTTTGTTCCG
CCCCTCGGCTACTGCCAGGTCCAATCACATTTTTGAACAGGCCGGAAGCA
TAGAGACGAGGATGCAAGGTTCCGTGGTGTGATGCTTTCTGACCGCCGGC
GCGTGTACCATTTCAGCACACTGAATGATTAGCGCCTGGCCACACAGTAG
CGTGCCAATTCCAACGTCGAGGGCTAGGGTTAGGGCATGGCCTTGCACGA
CTGCACTTCCCGCTCCAATAAATACACTTGTGAAAAC
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protein sequence of jgi.p|Trimin1|348679

>Trimin1|348679|estExt_Genemark1.C_Ctg_300008 ID=Trimin1|348679|estExt_Genemark1.C_Ctg_300008|Name=jgi.p|Trimin1|348679|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=222bp
MMQAILLLSAAAGASAFVVPSSFAGSQLAVRSASSTSMAMSFKEEMAGAT
APFGFFDPVGFSSDADDKKVKKFREAEVKHGRVAMLAFLGLLIQENFHPF
FEQGEADLGPASFHLQQVDDKFPLLSLTLFFGIGLVESFTIGRGWSKRDF
EDNGFVANLNEEYLPGDLKFDPLNLKPKDAAGLKEMQTKELNNGRLAMIA
TLGIWGQELVDGQTIAGHFSS*
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mRNA from alignment at Contig_30:66630..70447+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5308 ID=mRNA_5308|Name=jgi.p|Trimin1|348679|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3818bp|location=Sequence derived from alignment at Contig_30:66630..70447+ (Tribonema minus UTEX_B_3156 )
ATGATGCAGGCGATCCTCCTTCTCTCAGCTGCCGCAGGCGCCAGCGCCTT
CGTCGTGCCCTCCAGCTTCGCTGGCAGCCAGCTGGCAGTAAGGTGAGCTG
AGGTGGCTTGTATCGCCAACACTGTACGCGGCATGCTAGCTAGCAACGGT
GGCATGCAGTGTGTTTGCCCACACAAGTGGACTTTGCAACCGCTGCGTTT
GCGTCATGGCATTGTTCTACAATTTTTTAGTCGGATGTGGATCCGGCATT
CACCTCACATGTATCTACCAATCATGTTCGGCTCTGTGCCTGCCATTGCC
AGTGATAGCAGCAAGGTGTCGCTGTGACTTGAACATAGTCCGCGGCTTGA
TCGTGATGAATTCTTTTTTGCTATCAAGCAATCATTTGAGGGTTGACGTC
AAAAGATGACATGCAGACACTGCAGCTGCGCTTCCTACTGTGCATCCTAC
TGGCAGTTCGCTCACATACATCATACCTCAATGGCGTTTGAGTCTGTCAT
CCCCAACAGCCTCCCACCACCACCACCGCATCTTCACTCACACCCAGGCC
TGCAACATTCCGCACAAGACACATCGACAACAGCACCTGAGGCTTTGCCA
TTATATTTGCAACGCCCAAACTGGCCATTCTGACTGCAGCTGCCGCCGAG
TTCTAATTCACATGCACCGCACACTTCAACGGCGCTGCTGCCCTATCACC
CACAACCCCCCCCCCCCCCCTTCCTCACCCCAACTAAATGCACAGGTCTG
CGAGCTCCACCAGCATGGCCATGAGCTTCAAGGAGGAGATGGCTGGTGCC
ACCGCCCCCTTTGGCTTCTTTGACCCCGTCGGCTTCTCTTCTGACGCCGA
CGACAAGAAGGTCAAGAAGTTCCGCGAGGCGGAGGTGAAGCACGGCCGTG
TTGCCATGCTCGCCTTCCTCGGCCTCCTCATCCAGGTACGGAGTGCTGTC
GTGTGTGGTGATGCGGTGCTCTATGTAGGCGTGATTATCTGTTTTTGAGG
GAATGGAGAAGGAAGCAAGGGATTGGCACGTGTGTGAGCTAGGCACGGTG
GTGATGCTTCCTGCCATTGCTGCCAAACACAGCTTCTGTGACCAAGAGGG
TGGAAGGTTGTGGTGCGTCACGTGGTTCAAGGGCTGCAGTGCCGAGCATT
GAGTAGATGACAGTGGTGCCCCACCCCAACACTGCACGTACGTGCAGCTG
CCTCCATCTGCTCTTGTACATGTCACATGCTAGGCAGCACAGGTTGGAGC
CATCTCAGTGACTGGATTGCGCAACTGAGTATTATCAATCACGGACTTCA
CGTAATCCCGGGTGTCCTGCATTCCTTCCTTTCTGCAGGGACGTGGTGTT
GCTCCTTCAACTGTGAAGTTCATATATGCACATTGACTATGAGTGATTGT
GGTCGTACATCATGAGGTTGAATTCATGGCTGGCGCAAAGGAATAATCTC
GGTCCTGCCAATTGTGCAAGGGCGACTTTGTGACAGCAGCAACGAGCTGC
CCCTGGTTTACAGGGCTGCAATTCTTCTGCAGGCAACATCTTTCTCCGAA
GGCAACACTGACCCCCATGCACCTGAATTCCCCAGCTTCTGCAACTGACG
TGGAGTTTCTCTTACAACTCGCACCTGCAGGAGAACTTCCACCCCTTCTT
TGAGCAGGGCGAGGCCGACCTGGGCCCGGCCTCCTTCCACTTGCAGCAGG
TGGACGACAAGTTCCCCCTGCTGTCCCTCACTCTGTTCTTCGGCATCGGC
CTGGTGGAGTCCTTCACCATTGGGCGCGGGTGGTCCAAGAGGGACTTCGA
GGTCAGTATTCTGATTATTTCCATACTTCTATGTACACAGTTATAGTGAT
CATCACGATACTTCAAATGCTTGAAAAAGTTCGTGAAATTGGTGTTGCGA
TCATTGCTAACTTTATCCCTCATCCTAACCCTTGCCATACCAGCATATTT
ACCAGGGACATCGTATCTTGATGCTATTCGTGATGACAACTGGTACTCAC
GGTTACGTGTGTTGATGCCCACCTGAGTTCACACACAAGCACATGCAACC
CTTGCCAATGGGCGTGAGTCGCCTCGCTTGAAATGCAAGCTCAGCATGCA
AGCATGGCTGTACTCTGTTATATCCCACCTACTCCTTCTTGCGGCATGCG
CAAGCTGTTAAATGCTGCGCAGGCGATAAAATCGGCTGATGTATGCGCGC
TCAGCAAGCAGCGCTCAGCAAGCAGCTCAGGCTGCAGCGTGTGCGCCACA
CTCGCTCGCTACATGAATACTGCTTTATTGTCCAGCTTGTGGTCTGACAT
GACATATACCCATCCCTACGTGCCCCTCCGACGCAGGACAACGGCTTCGT
CGCCAACCTCAACGAGGAATACCTCCCCGGGGACCTGAAGTTCGACGTGA
GTGCTCAACTCCAGAAGGAAATATGTACATGTTGAAATTGTTACATTGAT
ATCAGATAGTTGTGTGCCATGCGGGGCTAATTTAGTTTCCATCATTCAGA
GCGAGAGAACTCTTTCTTGAAGTACCTCCAAGATAGCGCGAATGGTACGA
GCTCAGCTAGTTGTGCAGTGACACCCTTTTTCGTGATGCAGCAATTCTGT
ACGTCTGCGCTGCTGATTGTGCTTAAGCTCCTCAAATCATTGCCAGTGAT
ACCTAAGGCCTGCCACATCTGATGGTTGCTCAAGTGTCACAAGCTGCGAA
TGGCTTTGAAAATGAGTGGCAATACGTCACAGTGGTATATGTACCGCGCA
AACATGCTGCGTCTGAATGCGGCAGACCAAGCGAACACCAATGGGCATCT
TGTGACTCTCCCTGTACCTCCCAATCTACCTCACCCTCACCAATGGCGCT
TCCAATTGAGCGCTTCCGCTAAAGCAGCATGAATGGAGCACCAGCGGATT
TTACTCTTATTTCACTATCACCACATCCCTTGAACTTGCCGCTGCAGCCG
CTTAACCTCAAGCCCAAGGACGCCGCTGGCCTGAAGGAGATGCAGACCAA
GGAGCTCAACAACGGCCGCCTGGCCATGATCGCCACCCTCGGCATCTGTG
AGTCGCCGCGCCCAACACACTGCTCAGCACACATGTTGAGGTTCACATGT
TGAAGTTTGTGTGGGCAGCATCACTCGGCATGCGTAGTGCTCATGCGAAT
GTGCTGTGTGCAGAGGTGATTCAATTTCTGGCAGTGGCAAGCACTGATTT
GGATGCGTGGAGCGCAGCCAGGCTCACTAGCACATGGGTGCGCATGGGCC
ATGCTTGTGTCATACTTTAATTTTCATCAAACGGCCCATGGTGAACGTGA
TGGTCAAAAGCGCCAGTGTAATTGCGGTATGATGAAAGAAGGTATGCATC
AAGGTGTGCCTGAACTTCTGTGCTTTGCCGCAGCCCTTTGCTGACAGTCC
TTTTGCCCTTGGTGCTCTGTGTATCTCCTTCTTGTTGACAACAGGGGGAC
AGGAGCTCGTGGACGGCCAGACCATTGCTGGCCACTTCAGCTCCTAAGCG
GATGCCCACCTGTAACAGCCAGTTCAAGCCTTTCAGAAATTTTGCAGATT
TAGTCTAGTTACCTCTGGAGTCTTTGTTCCGCCCCTCGGCTACTGCCAGG
TCCAATCACATTTTTGAACAGGCCGGAAGCATAGAGACGAGGATGCAAGG
TTCCGTGGTGTGATGCTTTCTGACCGCCGGCGCGTGTACCATTTCAGCAC
ACTGAATGATTAGCGCCTGGCCACACAGTAGCGTGCCAATTCCAACGTCG
AGGGCTAGGGTTAGGGCATGGCCTTGCACGACTGCACTTCCCGCTCCAAT
AAATACACTTGTGAAAAC
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Coding sequence (CDS) from alignment at Contig_30:66630..70447+

>mRNA_5308 ID=mRNA_5308|Name=jgi.p|Trimin1|348679|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=666bp|location=Sequence derived from alignment at Contig_30:66630..70447+ (Tribonema minus UTEX_B_3156 )
ATGATGCAGGCGATCCTCCTTCTCTCAGCTGCCGCAGGCGCCAGCGCCTT
CGTCGTGCCCTCCAGCTTCGCTGGCAGCCAGCTGGCAGTAAGGTCTGCGA
GCTCCACCAGCATGGCCATGAGCTTCAAGGAGGAGATGGCTGGTGCCACC
GCCCCCTTTGGCTTCTTTGACCCCGTCGGCTTCTCTTCTGACGCCGACGA
CAAGAAGGTCAAGAAGTTCCGCGAGGCGGAGGTGAAGCACGGCCGTGTTG
CCATGCTCGCCTTCCTCGGCCTCCTCATCCAGGAGAACTTCCACCCCTTC
TTTGAGCAGGGCGAGGCCGACCTGGGCCCGGCCTCCTTCCACTTGCAGCA
GGTGGACGACAAGTTCCCCCTGCTGTCCCTCACTCTGTTCTTCGGCATCG
GCCTGGTGGAGTCCTTCACCATTGGGCGCGGGTGGTCCAAGAGGGACTTC
GAGGACAACGGCTTCGTCGCCAACCTCAACGAGGAATACCTCCCCGGGGA
CCTGAAGTTCGACCCGCTTAACCTCAAGCCCAAGGACGCCGCTGGCCTGA
AGGAGATGCAGACCAAGGAGCTCAACAACGGCCGCCTGGCCATGATCGCC
ACCCTCGGCATCTGGGGACAGGAGCTCGTGGACGGCCAGACCATTGCTGG
CCACTTCAGCTCCTAA
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