mRNA_5298 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|130126 vs. uniprot
Match: A0A835YXF0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXF0_9STRA) HSP 1 Score: 815 bits (2105), Expect = 1.920e-298 Identity = 403/403 (100.00%), Postives = 403/403 (100.00%), Query Frame = 1 Query: 1 NSICSMDALRAGGPGWFADALQINVDLATDQKVRDDPALSVVAPDLFKPWVPLVDASHSIKGTITLQAPHGRRVWITSLSVTLEEHLALLDTVGSALLSTATISVAGGRYVEGTCTLDFILTMDDLAGMGEGGLREGYIGDMLAVRHLLTVTAARPWYTFNLEHTVPLAVQRVSPPPAGSATTQGPQNEEGGPNTVMLIPDCNGRAEFTFERDTLALDGTVEGTVELKELSAAIAAAHVMIIRTEMLSGSMFETVIGEHTILGLSTPEGLANRAIPKHAANGLMDDQDFVACPFVEFRHPHVCVTEQEGCQTLPVKGNATIAVRFSLAGMPLTPTMRYVGAEAPPSGTPPKEGEKHQGGDEDGEDGVVGVRYFMRLVLEGQESAWEPAPTYWNTHEIFLYRSR 1209 NSICSMDALRAGGPGWFADALQINVDLATDQKVRDDPALSVVAPDLFKPWVPLVDASHSIKGTITLQAPHGRRVWITSLSVTLEEHLALLDTVGSALLSTATISVAGGRYVEGTCTLDFILTMDDLAGMGEGGLREGYIGDMLAVRHLLTVTAARPWYTFNLEHTVPLAVQRVSPPPAGSATTQGPQNEEGGPNTVMLIPDCNGRAEFTFERDTLALDGTVEGTVELKELSAAIAAAHVMIIRTEMLSGSMFETVIGEHTILGLSTPEGLANRAIPKHAANGLMDDQDFVACPFVEFRHPHVCVTEQEGCQTLPVKGNATIAVRFSLAGMPLTPTMRYVGAEAPPSGTPPKEGEKHQGGDEDGEDGVVGVRYFMRLVLEGQESAWEPAPTYWNTHEIFLYRSR Sbjct: 1 NSICSMDALRAGGPGWFADALQINVDLATDQKVRDDPALSVVAPDLFKPWVPLVDASHSIKGTITLQAPHGRRVWITSLSVTLEEHLALLDTVGSALLSTATISVAGGRYVEGTCTLDFILTMDDLAGMGEGGLREGYIGDMLAVRHLLTVTAARPWYTFNLEHTVPLAVQRVSPPPAGSATTQGPQNEEGGPNTVMLIPDCNGRAEFTFERDTLALDGTVEGTVELKELSAAIAAAHVMIIRTEMLSGSMFETVIGEHTILGLSTPEGLANRAIPKHAANGLMDDQDFVACPFVEFRHPHVCVTEQEGCQTLPVKGNATIAVRFSLAGMPLTPTMRYVGAEAPPSGTPPKEGEKHQGGDEDGEDGVVGVRYFMRLVLEGQESAWEPAPTYWNTHEIFLYRSR 403
BLAST of jgi.p|Trimin1|130126 vs. uniprot
Match: A0A835YLM0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLM0_9STRA) HSP 1 Score: 362 bits (930), Expect = 1.170e-117 Identity = 195/417 (46.76%), Postives = 265/417 (63.55%), Query Frame = 1 Query: 1 NSICSMDALRAGGPGWFADALQINVDLATDQKV-RDDPALSVVAPDLFKPWVPLVDASHSIKGTITLQAPHGRRVWITSLSVTLEEHLALLDTVGSALLSTATISVAGGRYVEGTCTLDFILTMDDL--AGMGEGGLREGYIGDMLAVRHLLTVTAARPWYTFNLEHTVPLAVQRVSPPPAGSAT-TQGPQNEEGGPNTVMLIPDCNGRAEFTFERDTLALDGTVEGTVELKELSAAIAAAHVMIIRTEMLSGSMFETVIGEHTILGLSTPEGLANRAIPKHAANGLMD-----DQDFVACPFVEFRHPHVCVTEQEGCQTL-PVKGNATIAVRFSLAGMPLTPTMRYVGAEAPPSGTPPKEGEKHQGGDEDGEDGVVGVRYFMRLVLEGQ----ESAWEPAPTYWNTHEIFLYRSR 1209 N+ C+ L GGPGWF D L + V+LA D +V +D PALS+V F+ W LVDA+ + G + L+AP GR VWI++L + +EEHL LL++ GS LL +A I VA +Y++G + F+L +D L G G GLREGY+GDMLA+RH L VTAARPWYTF++ VP+ VQRV PPP + + GPQNEEGGPNT+M++PDCNGRAEF FERD L +DG + GTV ++ A++ HV++IRTE+L+G++FE+++GEHTILG P A R P + D + F+A P+V++RHP T Q G + P G+ T+ VR LA MPL+PTM ++G E +G VGVRY++RL++E Q E P P +WNTHE+FL+RSR Sbjct: 89 NAYCN---LNLGGPGWFTDVLTVTVELANDSRVVKDSPALSLVPAGAFQRWAQLVDAAAPMVGNVVLRAPSGRSVWISTLRLAIEEHLVLLES-GSDLLCSAGIDVAPAQYIDGAKSFPFVLNIDALNRGGGGGTGLREGYVGDMLALRHRLVVTAARPWYTFDVVTQVPIVVQRVVPPPQDADSHAYGPQNEEGGPNTLMILPDCNGRAEFAFERDALDIDGELVGTVAFTDVVKALSGVHVVMIRTEILAGNLFESIVGEHTILGRDPPGAPAYRPPPGQTPDETTDPLHPPEDLFIASPYVDYRHPRASSTAQLGAASNGPFIGSGTLPVRVPLAHMPLSPTMAHLGVERGAAGXXXXXXXXXX---------XVGVRYYVRLIIEEQPLEEEGGQRPTPVFWNTHEVFLFRSR 492
BLAST of jgi.p|Trimin1|130126 vs. uniprot
Match: A0A6H5KSM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM1_9PHAE) HSP 1 Score: 266 bits (679), Expect = 1.210e-79 Identity = 153/405 (37.78%), Postives = 231/405 (57.04%), Query Frame = 1 Query: 1 NSICSMDALRAGGPGWFADALQINVDLATDQKVRDDPALSVVAPDLFKPWVPLVDASHSIKGTITLQAPHGRRVWITSLSVTLEEHLALLDTVGSALLSTATISVAGGRYVEGTCTLDFILTMDDLAGMGEGGLREGYIGDMLAVRHLLTVTAARPWYTFNLEHTVPLAVQRVSPPPAGSATTQGPQNEEGGPNTVMLIPDCNGRAEFTFERDTLALDGTVEGTVELKELSAAIAAAHVMIIRTEMLSGSMFETVIGEHTILGLSTPEGLANRAIPKHAANGLMDDQDF---VACPFVEFRHPHVCVTEQEGCQTLPVKGNATIAVRFSLAGMPLTPTMRYVGAEAPPSGTPPKEGEKHQGGDEDGEDGVVGVRYFMRLVLEGQESAWEPAPTYWNTHEIFLYRS 1206 N IC++D + GGPGWF D +I+V++ +D+ D +LS+V ++F+ PL+D S +I GT+T+ AP +RVW++ ++VT EEHL +D+ ++ VA G++++ F L + L+G +RE Y+GD++A+RH L V+A RPWYTFN+ +PLA++ +S P A G NEEGGPN V++I DCNGR EF F D+ L ++GTV +++ I AAHVM++R E + G E ++ EHTILG E A+ GL +++ PFVE + H +++E C+ V G+ IAV L PLTP+ + + E H E +VGVRY++RL+LE +SA + YW+THEIF +RS Sbjct: 117 NYICNLDKVNLGGPGWFNDVFKISVEVDSDRTWMDTLSLSLVPRNVFRRHCPLLDTSENITGTVTVMAPTSKRVWMSGVTVTFEEHLMTVDSDTGEIVGALEAQVATGQFIKDKAVFSFNLDLGLLSGHRRWPVRETYVGDLMALRHRLMVSAQRPWYTFNVYSQLPLAMEYLSNAPDEDA---GQDNEEGGPNHVLVISDCNGRCEFDFGVDSFNLGDVLQGTVRFTDVALPIVAAHVMLLRAEFMYGEASEVLVAEHTILGECRKEKDPLSAL------GLSEEEQVRRQFMSPFVEQKDIHFVQSQEEDCRLEAVLGDVDIAVDVPLHTFPLTPSHMSLTQDI---------SEVHD------EAELVGVRYYVRLILE--DSAQQ---AYWHTHEIFFHRS 492
BLAST of jgi.p|Trimin1|130126 vs. uniprot
Match: D8LJC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJC5_ECTSI) HSP 1 Score: 258 bits (659), Expect = 2.120e-76 Identity = 147/405 (36.30%), Postives = 223/405 (55.06%), Query Frame = 1 Query: 1 NSICSMDALRAGGPGWFADALQINVDLATDQKVRDDPALSVVAPDLFKPWVPLVDASHSIKGTITLQAPHGRRVWITSLSVTLEEHLALLDTVGSALLSTATISVAGGRYVEGTCTLDFILTMDDLAGMGEGGLREGYIGDMLAVRHLLTVTAARPWYTFNLEHTVPLAVQRVSPPPAGSATTQGPQNEEGGPNTVMLIPDCNGRAEFTFERDTLALDGTVEGTVELKELSAAIAAAHVMIIRTEMLSGSMFETVIGEHTILGLSTPEGLANRAIPKHAANGLMDDQDF---VACPFVEFRHPHVCVTEQEGCQTLPVKGNATIAVRFSLAGMPLTPTMRYVGAEAPPSGTPPKEGEKHQGGDEDGEDGVVGVRYFMRLVLEGQESAWEPAPTYWNTHEIFLYRS 1206 N IC++D + GGPGWF D +I+V++ +D+ D +LS+V ++F+ PL+D S +I GT+T+ AP +RVW++ ++VT EEHL +D+ L+ VA G+++ F L + L G +RE Y+GD++A+RH L V+A RPWYTFN+ +PLA++ +S P A G +NEEGGPN V++I DCNGR +F F D+ L ++GTV ++++ I AAHVM++R E + G E ++ EHTILG E A+ GL +++ P+VE + H ++ E C+ V G+ I V L PLTP+ + + E +VGVRY++RL+LE YW+THEIF +RS Sbjct: 154 NYICNLDKVNLGGPGWFNDVFKISVEVDSDRTWMDTLSLSLVPRNVFQRHCPLLDTSENITGTVTVTAPTSKRVWMSGITVTFEEHLMTVDSDTGELVGALEAQVATGQFINDKAVFSFNLDLGLLDGHRRWPVRETYVGDLMALRHRLMVSAQRPWYTFNVYSQLPLAMEYLSSAPDEDA---GQENEEGGPNHVLVISDCNGRCDFDFGVDSFNLGDVLQGTVRFTDVTSPIVAAHVMLLRAEFMYGEASEVLVAEHTILGECRKEKDPLSAV------GLSEEEQVRRQFMSPYVEQKDIHFVRSQGEECRMEAVLGDVDIVVDVPLHAFPLTPSHMSLTQDIAAVND---------------EAELVGVRYYIRLILEDSTQQ-----AYWHTHEIFFHRS 529
BLAST of jgi.p|Trimin1|130126 vs. uniprot
Match: A0A7S2D7D8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D7D8_9STRA) HSP 1 Score: 102 bits (253), Expect = 6.350e-20 Identity = 93/402 (23.13%), Postives = 167/402 (41.54%), Query Frame = 1 Query: 16 MDALRAGGPGWFADALQINVDLATDQKVRDDPALS-VVAPDLFKPWVPLVDASHSIKGTITLQAPHGRRVWITSLSVTLEEHLALLDTVGSA-LLSTATISVAGGRYVEGTCTLDFILTMDDLAGMGEGGLREGYIGDMLAVRHLLTVTAARPWYTFNLEHTVPLAVQRVSPPP---AGSATTQGPQNEEGGPNTVMLIPDCNGRAEFTFERDTLALDGTVEGTVELKELSAAIAAAHVMIIRTEMLSGSMFETVIGEHTILGLSTPEGLANRAIPKHAANGLMDDQDFVACPFVEFRHPHVCVTEQEGCQTLPVKGNATIAVRFSLAGMP-LTPTMRYVGAEAPPSGTPPKEGEKHQGGDEDGEDGVVGVRYFMRLVLEGQESAWEPAPTYWNTHEIFLYR 1203 M+ + PGWF + I++ L + + A DL PL I G++ + G R+W+ ++ V +EE+ +++ V + + I Y++G + F + G + E Y G + H +TV RPWYTF+L H+ P++++++S P G + G N + P+ +L+PD G+ + + D+ LD ++ ++ + A + VMI+R E G + E +I E T+ + +P+ DD V + V + G A + LA + LTPT++ + + +E+ E V +YF RL L E + +WN++EI L+R Sbjct: 127 MERMMRVTPGWFFEPASISISLTNNPRYSTYAGPEHAQAKDLH----PLYRTDGIISGSVRINTG-GHRMWVGNMEVRVEEYCTMMEPVNNVDIAELVVIPKRKAGYMKGVVDIPFEFDL----GRSKWTWNESYHGHTFGLHHNITVQLDRPWYTFDLMHSKPISLEKISKAPKESVGEVSETGAANGQTVPHE-LLVPDYPGKLKMEYSIDSYNLDDVLKASIVMDGTDAPVEYLSVMIVREEFSGGIVCEDLIHEITV----------HNGVPE-------DDXXXXXXEGVPGEAKELTVEV--------ISGEAVYEIDLPLAEVGGLTPTIKKIACDD----------------NEEDESYTVETKYFFRLRLRTAEDQRD----HWNSNEILLHR 473 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|130126 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5298 ID=mRNA_5298|Name=jgi.p|Trimin1|130126|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1209bp|location=Sequence derived from alignment at Contig_32:1015763..1017759+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. AACTCGATATGCAGTATGGACGCATTAAGAGCAGGGGGTCCTGGCTGGTTback to top protein sequence of jgi.p|Trimin1|130126 >Trimin1|130126|gw1.32.6.1 ID=Trimin1|130126|gw1.32.6.1|Name=jgi.p|Trimin1|130126|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=403bp NSICSMDALRAGGPGWFADALQINVDLATDQKVRDDPALSVVAPDLFKPWback to top mRNA from alignment at Contig_32:1015763..1017759+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5298 ID=mRNA_5298|Name=jgi.p|Trimin1|130126|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1997bp|location=Sequence derived from alignment at Contig_32:1015763..1017759+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_32:1015763..1017759+ >mRNA_5298 ID=mRNA_5298|Name=jgi.p|Trimin1|130126|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1209bp|location=Sequence derived from alignment at Contig_32:1015763..1017759+ (Tribonema minus UTEX_B_3156 )back to top |