mRNA_5259 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348891
Unique NamemRNA_5259
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|348891 vs. uniprot
Match: A0A835YZS6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZS6_9STRA)

HSP 1 Score: 280 bits (717), Expect = 7.800e-96
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1
Query:    1 MGQSNYPQKALKCKSSMTEPFGQTICPEFANNFCVKEIMGMNAIAKANCGRTKYFGDTYNQKSGKCELRKCAAACEESAWSYEFEGITYQRQRFCCNYEFCNAGGQTRPNTALLGVLVPVAMALAYALASML 396
            MGQSNYPQKALKCKSSMTEPFGQTICPEFANNFCVKEIMGMNAIAKANCGRTKYFGDTYNQKSGKCELRKCAAACEESAWSYEFEGITYQRQRFCCNYEFCNAGGQTRPNTALLGVLVPVAMALAYALASML
Sbjct:    1 MGQSNYPQKALKCKSSMTEPFGQTICPEFANNFCVKEIMGMNAIAKANCGRTKYFGDTYNQKSGKCELRKCAAACEESAWSYEFEGITYQRQRFCCNYEFCNAGGQTRPNTALLGVLVPVAMALAYALASML 132          
BLAST of jgi.p|Trimin1|348891 vs. uniprot
Match: D8LSN0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSN0_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 5.390e-36
Identity = 53/99 (53.54%), Postives = 72/99 (72.73%), Query Frame = 1
Query:   10 SNYPQKALKCKSSMTEPFGQTICPEFANNFCVKEIMGMNAIAKANCGRTKYFGDTYNQKSGKCELRKCAAACEESAWSYEFEGITYQRQRFCCNYEFCN 306
            + YPQ AL+C +S+ EP G  ICPE  N +CVKE+   + +A+ +CGRT YFGD +N ++GKCE RKC A C ES+W +EFEG  Y+R RFCC++ +CN
Sbjct:   13 ARYPQDALRCLASLKEPEGLLICPEHRNGYCVKEV---SDLAEEDCGRTTYFGDKWNAQTGKCEYRKCEATCLESSWDFEFEGEAYERNRFCCDFNYCN 108          
BLAST of jgi.p|Trimin1|348891 vs. uniprot
Match: A0A836CEP7_9STRA (Centrosomal protein POC5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEP7_9STRA)

HSP 1 Score: 655 bits (1691), Expect = 1.400e-236
Identity = 366/366 (100.00%), Postives = 366/366 (100.00%), Query Frame = 1
Query:    1 MDLDAALEKLKLAGDAAAGQEFEYAFPSSSEGQGDREGLDDFEADSLNGSRYRTEAATPTATAFQDEEGHSMSDTILRVASGQDEDINELAAALRTQFREHVLRTAVDNVVNMKMRMLSDAEAAHARAEAVRAAEAXXXXXREELLLQETRRLQAALEAEQAKRGAMAGKLGTLHLGVLQRARLSCAYQAWRDEMAARRERIRRVTLGFQRTQAALEKRAFLWWRNAARREGVARARAEAAAQLKAVTSKIVARYEATLAAMANDLAAAQASADRERARGMKLEDDLRRALLRGMTVMNMEALGVFHDNRASAPPPPPALSPPARAPATPSRGDVLGGASPGGVRVVASATDMYPRRHGPPPPYHR 1098
            MDLDAALEKLKLAGDAAAGQEFEYAFPSSSEGQGDREGLDDFEADSLNGSRYRTEAATPTATAFQDEEGHSMSDTILRVASGQDEDINELAAALRTQFREHVLRTAVDNVVNMKMRMLSDAEAAHARAEAVRAAEAXXXXXREELLLQETRRLQAALEAEQAKRGAMAGKLGTLHLGVLQRARLSCAYQAWRDEMAARRERIRRVTLGFQRTQAALEKRAFLWWRNAARREGVARARAEAAAQLKAVTSKIVARYEATLAAMANDLAAAQASADRERARGMKLEDDLRRALLRGMTVMNMEALGVFHDNRASAPPPPPALSPPARAPATPSRGDVLGGASPGGVRVVASATDMYPRRHGPPPPYHR
Sbjct:    1 MDLDAALEKLKLAGDAAAGQEFEYAFPSSSEGQGDREGLDDFEADSLNGSRYRTEAATPTATAFQDEEGHSMSDTILRVASGQDEDINELAAALRTQFREHVLRTAVDNVVNMKMRMLSDAEAAHARAEAVRAAEAXXXXXREELLLQETRRLQAALEAEQAKRGAMAGKLGTLHLGVLQRARLSCAYQAWRDEMAARRERIRRVTLGFQRTQAALEKRAFLWWRNAARREGVARARAEAAAQLKAVTSKIVARYEATLAAMANDLAAAQASADRERARGMKLEDDLRRALLRGMTVMNMEALGVFHDNRASAPPPPPALSPPARAPATPSRGDVLGGASPGGVRVVASATDMYPRRHGPPPPYHR 366          
BLAST of jgi.p|Trimin1|348891 vs. uniprot
Match: A0A835YXP7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXP7_9STRA)

HSP 1 Score: 145 bits (366), Expect = 1.010e-35
Identity = 141/386 (36.53%), Postives = 174/386 (45.08%), Query Frame = 1
Query:  202 EGHSMSDTILRVASGQDE-----------DINELAAALRTQFREHVLRTAVDNVVNMKMRMLSDAEAAHARAEAVRAAEAXXXXXREELLLQETRRLQAAL-------------------------------------------EAEQAKRGAMAGKLGTLHLGVLQRARLSCAYQA----------WRDEMAARRERIRRVTLGFQRTQAALEKRAF---------------------------LWWRNAARREGVARARAEAAAQLKAVTSKIVARYEATLAAMANDLAAAQASADRERARGMKLEDDLRRALLRGMTVMNMEALGVFHDNRASAPPPPPALSPPARAPATPSRGDVLGGASPGGVRVVASATDMY---PRRHG 1077
            EG S++++I+RV SGQDE           D++ L AALR QFR+ +LR AVD +VN+K+RMLS+A+AA  R EAVRAAEA       E L +E   +  AL                                            A+Q       GK  TL   + Q   L   Y +          WR   AA R     V      T+  L++RA                              WR A R +  A  R EAAAQLKAVT  IV RYE  LA MA +LAAA A+A  ERARG KLE+DLRRALLRGMT+MNMEALG+F +  ++ P P          P TPS+       S    R  A+AT      P RHG
Sbjct:   88 EGISIAESIVRVTSGQDEVGTAPMMGTAPDVDTLTAALREQFRQGLLRAAVDGLVNVKVRMLSEAQAAVTRLEAVRAAEAAEAAALSERLQREIDDVGGALVAAXXXXXXXXXXXXXXXXXXXASVVVSWSGPFVSGWLRRGYGSAQQRAAAPSGGKGATLSAKLAQEHLLRVNYNSGGTAQPPSARWRANAAAFRRERANVRAALLTTRCLLQRRAMQRYVTTISVCYVSAARHAEVHRYDKRVFRWRAAVRLQHAASLRTEAAAQLKAVTGDIVTRYEERLADMATELAAAHATAAAERARGQKLEEDLRRALLRGMTLMNMEALGIFGEKHSAMPAP-------ISTPPTPSQQQC----STAAARSSAAATSTRGASPMRHG 462          
BLAST of jgi.p|Trimin1|348891 vs. uniprot
Match: A0A7S4D5K4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5K4_HETAK)

HSP 1 Score: 53.5 bits (127), Expect = 6.080e-5
Identity = 30/70 (42.86%), Postives = 47/70 (67.14%), Query Frame = 1
Query:  724 AQLKAVTSKIVARYEATLAAMANDLAAAQASADRERARGMKLEDDLRRALLRGMTVMNMEALGVFHDNRA 933
            A+L  VT +++ RYEA L  MA DL  A+     E+ R  ++E++ R+A+L+G+T MN+ A+G+F D RA
Sbjct:   27 AKLGRVTRELIGRYEAELRRMAADLGHARDLVRGEQRRRRQMEEEFRQAILKGITAMNVGAIGLFGDQRA 96          
BLAST of jgi.p|Trimin1|348891 vs. uniprot
Match: A0A3Q3G6H9_9LABR (Centrosomal protein POC5 n=2 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3G6H9_9LABR)

HSP 1 Score: 55.8 bits (133), Expect = 7.520e-5
Identity = 37/131 (28.24%), Postives = 63/131 (48.09%), Query Frame = 1
Query:  559 AYQAWRDEMAARRERIRRVTLGFQRTQAALEKRAFLWWRNAARREGVARARAEAAAQLKAVTSKIVARYEATLAAMANDLAAAQASADRERARGMKLEDDLRRALLRGMTVMNMEALGVFHDNRASAPPPP 951
            A+  WR + A  +E         Q     L+K+ +L W +  ++           A+ + V +++ A YEA LA   + +  AQA   R R    + E+ +++A +RG+  +N+EALG+FH       PPP
Sbjct:  265 AFTHWRLQHAEAKEEAHAAQAAQQHYNMQLKKKVWLGWHSLLQKHWKVNLERACRARAEEVCTRLSAEYEAKLAEHCDAIEKAQAEIQRLRLERERYEESMKKAFMRGVCALNIEALGMFHSTEGRPEPPP 395          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348891 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YZS6_9STRA7.800e-96100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LSN0_ECTSI5.390e-3653.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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BLAST of jgi.p|Trimin1|348891 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A836CEP7_9STRA1.400e-236100.00Centrosomal protein POC5 n=1 Tax=Tribonema minus T... [more]
A0A835YXP7_9STRA1.010e-3536.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4D5K4_HETAK6.080e-542.86Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A3Q3G6H9_9LABR7.520e-528.24Centrosomal protein POC5 n=2 Tax=Labrus bergylta T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_32contigContig_32:786700..787889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348891|estExt_Genemark1.C_Ctg_320102
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-09_002280.1
TranscriptId349213
TrackFilteredModels1
ProteinId348891
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348891gene_5259Tribonema minus UTEX_B_3156 geneContig_32 786700..787889 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5259_1exon_5259_1Tribonema minus UTEX_B_3156 exonContig_32 786700..786788 +
exon_5259_2exon_5259_2Tribonema minus UTEX_B_3156 exonContig_32 787148..787336 +
exon_5259_3exon_5259_3Tribonema minus UTEX_B_3156 exonContig_32 787758..787889 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5259CDS_5259Tribonema minus UTEX_B_3156 CDSContig_32 786700..786788 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_5259UTR3_5259Tribonema minus UTEX_B_3156 three_prime_UTRContig_32 787879..787889 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348891Trimin1|348891|estExt_Genemark1.C_Ctg_320102Tribonema minus UTEX_B_3156 polypeptideContig_32 786700..787878 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5259 ID=mRNA_5259|Name=jgi.p|Trimin1|348891|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=410bp|location=Sequence derived from alignment at Contig_32:786700..787889+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACAGAGCAACTACCCTCAGAAAGCCCTCAAGTGCAAGAGCTCCAT
GACAGAGCCTTTTGGTCAGACCATCTGCCCGGAGTTTGCCAACAACTTCT
GCGTCAAGGAGATAATGGGCATGAACGCTATTGCCAAGGCAAACTGCGGC
AGGACCAAGTACTTCGGTGATACGTACAACCAGAAAAGCGGCAAGTGCGA
GCTCAGGAAGTGCGCCGCTGCTTGCGAGGAGAGTGCCTGGTCTTATGAGT
TTGAGGGCATAACATACCAGCGACAAAGGTTTTGCTGCAACTACGAATTC
TGCAATGCTGGTGGCCAGACCAGGCCAAACACGGCATTGCTTGGAGTACT
TGTACCAGTGGCGATGGCACTAGCGTATGCGTTAGCAAGCATGTTATGAC
ACACATTCCT
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protein sequence of jgi.p|Trimin1|348891

>Trimin1|348891|estExt_Genemark1.C_Ctg_320102 ID=Trimin1|348891|estExt_Genemark1.C_Ctg_320102|Name=jgi.p|Trimin1|348891|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=133bp
MGQSNYPQKALKCKSSMTEPFGQTICPEFANNFCVKEIMGMNAIAKANCG
RTKYFGDTYNQKSGKCELRKCAAACEESAWSYEFEGITYQRQRFCCNYEF
CNAGGQTRPNTALLGVLVPVAMALAYALASML*
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mRNA from alignment at Contig_32:786700..787889+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5259 ID=mRNA_5259|Name=jgi.p|Trimin1|348891|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1190bp|location=Sequence derived from alignment at Contig_32:786700..787889+ (Tribonema minus UTEX_B_3156 )
ATGGGACAGAGCAACTACCCTCAGAAAGCCCTCAAGTGCAAGAGCTCCAT GACAGAGCCTTTTGGTCAGACCATCTGCCCGGAGTTTGCGTGAGTGCTCT TCCTGACGATGATGTAGCTGCTGGATGTAAGGCTTGTTGTTTGCATAGCA TGCAGCAATCGGACCCGCCAGGGCGTGACTGTGCCACATCATGCCACATC ACACCACATTAGGCAATCTCTTTCATGAGACTTTGTGAGCTTGCCTCAAC ATATCACTTCTGGCTTTGTGAGCTTGCCACAAAGTCAACTTGCTTCTTTA TGAGGCTTTGCGAGCTTGCCATTGCCTGCTGCTTCCACAGCTCAATCCAG AAAGTTGAAACTTCGCAACAGTCTGGTTGCGCACACACAACATCTTGAGC TTCGCTCGCCTCTCACGCATCAGCTGCGTTGTTGTCAAGCCGCTGCAGCA ACAACTTCTGCGTCAAGGAGATAATGGGCATGAACGCTATTGCCAAGGCA AACTGCGGCAGGACCAAGTACTTCGGTGATACGTACAACCAGAAAAGCGG CAAGTGCGAGCTCAGGAAGTGCGCCGCTGCTTGCGAGGAGAGTGCCTGGT CTTATGAGTTTGAGGGCATAACATACCAGCGACAAAGGTGAGAGCGGGTA ACATTGCATTCATGTCACTGCCAGGCACAATGTCGACAAGTATGCTCGAC TGTAAAAAGCTCGCACACAGAAGTCTTTTGGATTCTGCGGATATGGTGGC ACTGTTTGACTCGTGGCCATTTGCCGCAGCAGCAGCGACCACGGTCATTG GTGGAAAGGCTTTTGCGGCTAACCACACCCTTGTCACCTAGAGCTCTACA ATCTTTTGATTCGTTTCCATGAATCCAGCGGCTATACGCCCTTGCATCAG ATTCGGCACCTGGTTAAGTGGTCGACCGTGTTTGCTGACGCCAAGGCAGA GCTTCATCCTTGAGGACACATGCACTCGAAGCTTCAGTTCTTCTGCTGCT TGTTGTGAACTTGAAGCTTCAGTTCTTCTGCTGGTTGTTGTGTTGTGCCG CCCTGCAGGTTTTGCTGCAACTACGAATTCTGCAATGCTGGTGGCCAGAC CAGGCCAAACACGGCATTGCTTGGAGTACTTGTACCAGTGGCGATGGCAC TAGCGTATGCGTTAGCAAGCATGTTATGACACACATTCCT
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Coding sequence (CDS) from alignment at Contig_32:786700..787889+

>mRNA_5259 ID=mRNA_5259|Name=jgi.p|Trimin1|348891|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=399bp|location=Sequence derived from alignment at Contig_32:786700..787889+ (Tribonema minus UTEX_B_3156 )
ATGGGACAGAGCAACTACCCTCAGAAAGCCCTCAAGTGCAAGAGCTCCAT
GACAGAGCCTTTTGGTCAGACCATCTGCCCGGAGTTTGCCAACAACTTCT
GCGTCAAGGAGATAATGGGCATGAACGCTATTGCCAAGGCAAACTGCGGC
AGGACCAAGTACTTCGGTGATACGTACAACCAGAAAAGCGGCAAGTGCGA
GCTCAGGAAGTGCGCCGCTGCTTGCGAGGAGAGTGCCTGGTCTTATGAGT
TTGAGGGCATAACATACCAGCGACAAAGGTTTTGCTGCAACTACGAATTC
TGCAATGCTGGTGGCCAGACCAGGCCAAACACGGCATTGCTTGGAGTACT
TGTACCAGTGGCGATGGCACTAGCGTATGCGTTAGCAAGCATGTTATGA
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