mRNA_5259 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|348891 vs. uniprot
Match: A0A835YZS6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZS6_9STRA) HSP 1 Score: 280 bits (717), Expect = 7.800e-96 Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1
Query: 1 MGQSNYPQKALKCKSSMTEPFGQTICPEFANNFCVKEIMGMNAIAKANCGRTKYFGDTYNQKSGKCELRKCAAACEESAWSYEFEGITYQRQRFCCNYEFCNAGGQTRPNTALLGVLVPVAMALAYALASML 396
MGQSNYPQKALKCKSSMTEPFGQTICPEFANNFCVKEIMGMNAIAKANCGRTKYFGDTYNQKSGKCELRKCAAACEESAWSYEFEGITYQRQRFCCNYEFCNAGGQTRPNTALLGVLVPVAMALAYALASML
Sbjct: 1 MGQSNYPQKALKCKSSMTEPFGQTICPEFANNFCVKEIMGMNAIAKANCGRTKYFGDTYNQKSGKCELRKCAAACEESAWSYEFEGITYQRQRFCCNYEFCNAGGQTRPNTALLGVLVPVAMALAYALASML 132
BLAST of jgi.p|Trimin1|348891 vs. uniprot
Match: D8LSN0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSN0_ECTSI) HSP 1 Score: 129 bits (325), Expect = 5.390e-36 Identity = 53/99 (53.54%), Postives = 72/99 (72.73%), Query Frame = 1
Query: 10 SNYPQKALKCKSSMTEPFGQTICPEFANNFCVKEIMGMNAIAKANCGRTKYFGDTYNQKSGKCELRKCAAACEESAWSYEFEGITYQRQRFCCNYEFCN 306
+ YPQ AL+C +S+ EP G ICPE N +CVKE+ + +A+ +CGRT YFGD +N ++GKCE RKC A C ES+W +EFEG Y+R RFCC++ +CN
Sbjct: 13 ARYPQDALRCLASLKEPEGLLICPEHRNGYCVKEV---SDLAEEDCGRTTYFGDKWNAQTGKCEYRKCEATCLESSWDFEFEGEAYERNRFCCDFNYCN 108
BLAST of jgi.p|Trimin1|348891 vs. uniprot
Match: A0A836CEP7_9STRA (Centrosomal protein POC5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEP7_9STRA) HSP 1 Score: 655 bits (1691), Expect = 1.400e-236 Identity = 366/366 (100.00%), Postives = 366/366 (100.00%), Query Frame = 1
Query: 1 MDLDAALEKLKLAGDAAAGQEFEYAFPSSSEGQGDREGLDDFEADSLNGSRYRTEAATPTATAFQDEEGHSMSDTILRVASGQDEDINELAAALRTQFREHVLRTAVDNVVNMKMRMLSDAEAAHARAEAVRAAEAXXXXXREELLLQETRRLQAALEAEQAKRGAMAGKLGTLHLGVLQRARLSCAYQAWRDEMAARRERIRRVTLGFQRTQAALEKRAFLWWRNAARREGVARARAEAAAQLKAVTSKIVARYEATLAAMANDLAAAQASADRERARGMKLEDDLRRALLRGMTVMNMEALGVFHDNRASAPPPPPALSPPARAPATPSRGDVLGGASPGGVRVVASATDMYPRRHGPPPPYHR 1098
MDLDAALEKLKLAGDAAAGQEFEYAFPSSSEGQGDREGLDDFEADSLNGSRYRTEAATPTATAFQDEEGHSMSDTILRVASGQDEDINELAAALRTQFREHVLRTAVDNVVNMKMRMLSDAEAAHARAEAVRAAEAXXXXXREELLLQETRRLQAALEAEQAKRGAMAGKLGTLHLGVLQRARLSCAYQAWRDEMAARRERIRRVTLGFQRTQAALEKRAFLWWRNAARREGVARARAEAAAQLKAVTSKIVARYEATLAAMANDLAAAQASADRERARGMKLEDDLRRALLRGMTVMNMEALGVFHDNRASAPPPPPALSPPARAPATPSRGDVLGGASPGGVRVVASATDMYPRRHGPPPPYHR
Sbjct: 1 MDLDAALEKLKLAGDAAAGQEFEYAFPSSSEGQGDREGLDDFEADSLNGSRYRTEAATPTATAFQDEEGHSMSDTILRVASGQDEDINELAAALRTQFREHVLRTAVDNVVNMKMRMLSDAEAAHARAEAVRAAEAXXXXXREELLLQETRRLQAALEAEQAKRGAMAGKLGTLHLGVLQRARLSCAYQAWRDEMAARRERIRRVTLGFQRTQAALEKRAFLWWRNAARREGVARARAEAAAQLKAVTSKIVARYEATLAAMANDLAAAQASADRERARGMKLEDDLRRALLRGMTVMNMEALGVFHDNRASAPPPPPALSPPARAPATPSRGDVLGGASPGGVRVVASATDMYPRRHGPPPPYHR 366
BLAST of jgi.p|Trimin1|348891 vs. uniprot
Match: A0A835YXP7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXP7_9STRA) HSP 1 Score: 145 bits (366), Expect = 1.010e-35 Identity = 141/386 (36.53%), Postives = 174/386 (45.08%), Query Frame = 1
Query: 202 EGHSMSDTILRVASGQDE-----------DINELAAALRTQFREHVLRTAVDNVVNMKMRMLSDAEAAHARAEAVRAAEAXXXXXREELLLQETRRLQAAL-------------------------------------------EAEQAKRGAMAGKLGTLHLGVLQRARLSCAYQA----------WRDEMAARRERIRRVTLGFQRTQAALEKRAF---------------------------LWWRNAARREGVARARAEAAAQLKAVTSKIVARYEATLAAMANDLAAAQASADRERARGMKLEDDLRRALLRGMTVMNMEALGVFHDNRASAPPPPPALSPPARAPATPSRGDVLGGASPGGVRVVASATDMY---PRRHG 1077
EG S++++I+RV SGQDE D++ L AALR QFR+ +LR AVD +VN+K+RMLS+A+AA R EAVRAAEA E L +E + AL A+Q GK TL + Q L Y + WR AA R V T+ L++RA WR A R + A R EAAAQLKAVT IV RYE LA MA +LAAA A+A ERARG KLE+DLRRALLRGMT+MNMEALG+F + ++ P P P TPS+ S R A+AT P RHG
Sbjct: 88 EGISIAESIVRVTSGQDEVGTAPMMGTAPDVDTLTAALREQFRQGLLRAAVDGLVNVKVRMLSEAQAAVTRLEAVRAAEAAEAAALSERLQREIDDVGGALVAAXXXXXXXXXXXXXXXXXXXASVVVSWSGPFVSGWLRRGYGSAQQRAAAPSGGKGATLSAKLAQEHLLRVNYNSGGTAQPPSARWRANAAAFRRERANVRAALLTTRCLLQRRAMQRYVTTISVCYVSAARHAEVHRYDKRVFRWRAAVRLQHAASLRTEAAAQLKAVTGDIVTRYEERLADMATELAAAHATAAAERARGQKLEEDLRRALLRGMTLMNMEALGIFGEKHSAMPAP-------ISTPPTPSQQQC----STAAARSSAAATSTRGASPMRHG 462
BLAST of jgi.p|Trimin1|348891 vs. uniprot
Match: A0A7S4D5K4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5K4_HETAK) HSP 1 Score: 53.5 bits (127), Expect = 6.080e-5 Identity = 30/70 (42.86%), Postives = 47/70 (67.14%), Query Frame = 1
Query: 724 AQLKAVTSKIVARYEATLAAMANDLAAAQASADRERARGMKLEDDLRRALLRGMTVMNMEALGVFHDNRA 933
A+L VT +++ RYEA L MA DL A+ E+ R ++E++ R+A+L+G+T MN+ A+G+F D RA
Sbjct: 27 AKLGRVTRELIGRYEAELRRMAADLGHARDLVRGEQRRRRQMEEEFRQAILKGITAMNVGAIGLFGDQRA 96
BLAST of jgi.p|Trimin1|348891 vs. uniprot
Match: A0A3Q3G6H9_9LABR (Centrosomal protein POC5 n=2 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3G6H9_9LABR) HSP 1 Score: 55.8 bits (133), Expect = 7.520e-5 Identity = 37/131 (28.24%), Postives = 63/131 (48.09%), Query Frame = 1
Query: 559 AYQAWRDEMAARRERIRRVTLGFQRTQAALEKRAFLWWRNAARREGVARARAEAAAQLKAVTSKIVARYEATLAAMANDLAAAQASADRERARGMKLEDDLRRALLRGMTVMNMEALGVFHDNRASAPPPP 951
A+ WR + A +E Q L+K+ +L W + ++ A+ + V +++ A YEA LA + + AQA R R + E+ +++A +RG+ +N+EALG+FH PPP
Sbjct: 265 AFTHWRLQHAEAKEEAHAAQAAQQHYNMQLKKKVWLGWHSLLQKHWKVNLERACRARAEEVCTRLSAEYEAKLAEHCDAIEKAQAEIQRLRLERERYEESMKKAFMRGVCALNIEALGMFHSTEGRPEPPP 395 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348891 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
BLAST of jgi.p|Trimin1|348891 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5259 ID=mRNA_5259|Name=jgi.p|Trimin1|348891|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=410bp|location=Sequence derived from alignment at Contig_32:786700..787889+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGGACAGAGCAACTACCCTCAGAAAGCCCTCAAGTGCAAGAGCTCCATback to top protein sequence of jgi.p|Trimin1|348891 >Trimin1|348891|estExt_Genemark1.C_Ctg_320102 ID=Trimin1|348891|estExt_Genemark1.C_Ctg_320102|Name=jgi.p|Trimin1|348891|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=133bp MGQSNYPQKALKCKSSMTEPFGQTICPEFANNFCVKEIMGMNAIAKANCGback to top mRNA from alignment at Contig_32:786700..787889+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5259 ID=mRNA_5259|Name=jgi.p|Trimin1|348891|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1190bp|location=Sequence derived from alignment at Contig_32:786700..787889+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_32:786700..787889+ >mRNA_5259 ID=mRNA_5259|Name=jgi.p|Trimin1|348891|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=399bp|location=Sequence derived from alignment at Contig_32:786700..787889+ (Tribonema minus UTEX_B_3156 )back to top |