mRNA_5242 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348878
Unique NamemRNA_5242
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|348878 vs. uniprot
Match: A0A835Z3J1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3J1_9STRA)

HSP 1 Score: 517 bits (1331), Expect = 3.910e-184
Identity = 294/294 (100.00%), Postives = 294/294 (100.00%), Query Frame = 1 
Query:    1 MAAESPQTIINPSAIGRPDRFDDDFEEPVEWDGAPDPLEYSELRAYGYQYLVEPIMNAGGYIAVSNRLGVHVTPKSRRRRAAFAPGEEPKLLRPSDAKEGFLALGSALDERMEAAAAAAPQRAAERSARLFEKQALMDADERAARRDAAEAAPVYRRAAPEVVAARAAXXXXXDXADAAALPRERIGLSALQRAYVLATAVSAAVGFGRGTPAAVDVGLPEAAVQAAAAVGFALLLANAGSAVLSARMASRGGRGVVHWALKGALAGPVSVAELRGLVGVEGVVQAGSGGSDSS 882
            MAAESPQTIINPSAIGRPDRFDDDFEEPVEWDGAPDPLEYSELRAYGYQYLVEPIMNAGGYIAVSNRLGVHVTPKSRRRRAAFAPGEEPKLLRPSDAKEGFLALGSALDERMEAAAAAAPQRAAERSARLFEKQALMDADERAARRDAAEAAPVYRRAAPEVVAARAAXXXXXDXADAAALPRERIGLSALQRAYVLATAVSAAVGFGRGTPAAVDVGLPEAAVQAAAAVGFALLLANAGSAVLSARMASRGGRGVVHWALKGALAGPVSVAELRGLVGVEGVVQAGSGGSDSS
Sbjct:    1 MAAESPQTIINPSAIGRPDRFDDDFEEPVEWDGAPDPLEYSELRAYGYQYLVEPIMNAGGYIAVSNRLGVHVTPKSRRRRAAFAPGEEPKLLRPSDAKEGFLALGSALDERMEAAAAAAPQRAAERSARLFEKQALMDADERAARRDAAEAAPVYRRAAPEVVAARAAXXXXXDXADAAALPRERIGLSALQRAYVLATAVSAAVGFGRGTPAAVDVGLPEAAVQAAAAVGFALLLANAGSAVLSARMASRGGRGVVHWALKGALAGPVSVAELRGLVGVEGVVQAGSGGSDSS 294
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BLAST of jgi.p|Trimin1|348878 vs. uniprot
Match: A0A7S2SV97_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV97_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.050e-11
Identity = 74/240 (30.83%), Postives = 119/240 (49.58%), Query Frame = 1 
Query:  109 PLEYSELRAYGYQYLVEPIMNAGGYIAVSNRLGVHVTPKSRRRRAAFAPGEEPKLLRPSDAKEGFLALGSALDERMEAAAAAAPQRAAERSARLFEKQALMDADERAARRDAAEAAPVYRRAAPEVVAARAAXXXXXDXADAA-ALPRERIGLSALQRAYVLATAVSAAVGFGRGTPAAVDVG-LPEAAVQAAAAVGFALLLANAGSAVLSARMASRGGRGVVHWALKGALAGPVSVAEL 822
            PL Y+ELR  G+  LV+PIM AGGY+A+S  LG+ +     RRR   +P     +L   +  +G LALG ALD+++  A++   +++   ++   E   +         R   EA  VY       V  RA      + A+   A+ +E   L+  QR Y L  A   A+G+G  T  A+  G + + A + A+ +   ++++N      S R+A    R V+ W LK  ++GP ++AEL
Sbjct:  105 PLSYAELRRLGFGDLVDPIMAAGGYLAISRELGISIE----RRRPPPSPAP---VLAADEEIQGGLALGGALDDKLAQASSTRGRKSDPSASSSVEAPRV---------RGMPEAPQVYTN-----VGKRARIAIGEEEAEEEEAIIQEFFLLNLAQRGYSLLGASVLAIGWGHATIEAIAAGWMSQTAQEVASNLALVVVVSNVACMAFSIRLAMDKQRSVMIWFLKCFMSGPTALAEL 323
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BLAST of jgi.p|Trimin1|348878 vs. uniprot
Match: A0A8J6C0T9_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C0T9_DIALT)

HSP 1 Score: 58.2 bits (139), Expect = 4.890e-6
Identity = 82/249 (32.93%), Postives = 110/249 (44.18%), Query Frame = 1 
Query:  103 PDPLEYSELRAYGYQYLVEPIMNAGGYIAVSNRLGVH-VTPKSRRRRAAFAPGEEPKLLRPSDA-KEGFLALGSALDERMEAAAAAAPQRAAERSARLFEKQALMDADERAARRDAAEAAP--VYRRAAPEVVAARAAXXXXXDXADAAALPRERI----GLSALQRAYVLATAVSAAVGFGRGTPAAVDVGLPEAAVQAAAAVGFALLLANAGSAVLSARMASRGGRGVVHWALKGALAGPVSVAELR 825
            P PL YSEL   G   L   +M+AGGYI +S RLG+    PK    +AA  P  E +   P +A K GFL LG A     +                + E + L +     ARR+ A+  P  V R    E++    A     D      LP  ++     +S  QRA  +  A + A+ FG    A   V L   A+ AA      L  A+A     +A +A+  GR  V WALK ALAG  ++AELR
Sbjct:   84 PPPLAYSELSRNGRDDLARAVMDAGGYIQMSRRLGLRWALPK----KAAPPPVVEVRNFDPREALKSGFLKLGEARSATED----------------VLETKRLSEF----ARREPAQLTPQQVGRSKLAELLRPARAPYVSTDDP----LPGRQLLVDMQMSLPQRASAVLLAWALALAFG----AHPTVPLDGDALLAARGAAVGLAAAHAALGAYAAVLAAGKGRSAVTWALKAALAGAPALAELR 300
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348878 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835Z3J1_9STRA3.910e-184100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2SV97_9STRA3.050e-1130.83Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J6C0T9_DIALT4.890e-632.93Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_32contigContig_32:671151..672169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348878|estExt_Genemark1.C_Ctg_320087
Max annot lvl2836|Bacillariophyta
EggNOG OGs2E95U@1|root,2SFJE@2759|Eukaryota,2XBB6@2836|Bacillariophyta
Evalue7.63e-05
Seed ortholog2850.Phatr44926
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_006390.1
TranscriptId349200
TrackFilteredModels1
ProteinId348878
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348878gene_5242Tribonema minus UTEX_B_3156 geneContig_32 671151..672169 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5242_1exon_5242_1Tribonema minus UTEX_B_3156 exonContig_32 671151..671176 +
exon_5242_2exon_5242_2Tribonema minus UTEX_B_3156 exonContig_32 671311..672169 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5242CDS_5242Tribonema minus UTEX_B_3156 CDSContig_32 671151..671176 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348878Trimin1|348878|estExt_Genemark1.C_Ctg_320087Tribonema minus UTEX_B_3156 polypeptideContig_32 671151..672169 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5242 ID=mRNA_5242|Name=jgi.p|Trimin1|348878|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=885bp|location=Sequence derived from alignment at Contig_32:671151..672169+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCTGAGAGCCCACAGACCATCATCAACCCCTCCGCCATCGGGCG
CCCCGACCGCTTCGACGACGACTTCGAGGAGCCGGTGGAATGGGACGGCG
CGCCGGACCCCCTCGAGTACAGCGAGCTGCGCGCGTACGGCTACCAGTAC
CTCGTGGAGCCCATCATGAATGCCGGCGGCTACATCGCTGTCTCCAACCG
ACTGGGCGTGCACGTGACGCCGAAGTCGCGGCGGCGCCGCGCGGCGTTCG
CGCCTGGCGAGGAGCCCAAGCTGCTGCGCCCCAGCGACGCCAAGGAGGGC
TTCCTGGCGCTTGGCAGCGCGCTCGACGAGCGCATGGAGGCCGCCGCCGC
CGCCGCGCCGCAGCGCGCCGCCGAGAGGTCCGCGCGCCTGTTTGAGAAAC
AGGCGCTCATGGACGCAGACGAGCGCGCGGCGCGCCGCGATGCGGCGGAG
GCGGCGCCCGTGTACCGGCGCGCGGCGCCCGAGGTCGTCGCCGCGCGCGC
CGCGGCGGATGCGGCTGCGGACGCTGCCGACGCCGCCGCGCTGCCGCGAG
AGCGCATCGGGCTCAGCGCGCTGCAGCGCGCGTACGTGCTGGCGACGGCG
GTGAGCGCGGCGGTGGGGTTCGGGCGCGGCACGCCTGCGGCCGTCGACGT
GGGCCTGCCGGAGGCGGCGGTGCAGGCGGCGGCCGCGGTGGGCTTCGCGC
TGCTGCTGGCGAACGCAGGGAGCGCGGTGCTTAGCGCGCGCATGGCGTCG
CGGGGGGGGAGGGGGGTGGTGCACTGGGCTTTGAAGGGGGCGCTGGCGGG
GCCCGTGAGCGTGGCGGAACTGCGGGGGTTGGTCGGTGTGGAGGGGGTGG
TGCAGGCTGGCAGTGGCGGCAGTGATAGTAGTTGA
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protein sequence of jgi.p|Trimin1|348878

>Trimin1|348878|estExt_Genemark1.C_Ctg_320087 ID=Trimin1|348878|estExt_Genemark1.C_Ctg_320087|Name=jgi.p|Trimin1|348878|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=295bp
MAAESPQTIINPSAIGRPDRFDDDFEEPVEWDGAPDPLEYSELRAYGYQY
LVEPIMNAGGYIAVSNRLGVHVTPKSRRRRAAFAPGEEPKLLRPSDAKEG
FLALGSALDERMEAAAAAAPQRAAERSARLFEKQALMDADERAARRDAAE
AAPVYRRAAPEVVAARAAADAAADAADAAALPRERIGLSALQRAYVLATA
VSAAVGFGRGTPAAVDVGLPEAAVQAAAAVGFALLLANAGSAVLSARMAS
RGGRGVVHWALKGALAGPVSVAELRGLVGVEGVVQAGSGGSDSS*
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mRNA from alignment at Contig_32:671151..672169+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5242 ID=mRNA_5242|Name=jgi.p|Trimin1|348878|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1019bp|location=Sequence derived from alignment at Contig_32:671151..672169+ (Tribonema minus UTEX_B_3156 )
ATGGCCGCTGAGAGCCCACAGACCATGTGCAGGCGTGCAGTGATACTGTC
ATTCGAATCCCTGTTTCCAGACTGCAACGTGTCCTCATTCGCATTGCCAT
GGGCACCATGGGCTAATCCTGACGCCCAACTAACATCGCCGCGTCGTCTG
CAATCCCCAGCATCAACCCCTCCGCCATCGGGCGCCCCGACCGCTTCGAC
GACGACTTCGAGGAGCCGGTGGAATGGGACGGCGCGCCGGACCCCCTCGA
GTACAGCGAGCTGCGCGCGTACGGCTACCAGTACCTCGTGGAGCCCATCA
TGAATGCCGGCGGCTACATCGCTGTCTCCAACCGACTGGGCGTGCACGTG
ACGCCGAAGTCGCGGCGGCGCCGCGCGGCGTTCGCGCCTGGCGAGGAGCC
CAAGCTGCTGCGCCCCAGCGACGCCAAGGAGGGCTTCCTGGCGCTTGGCA
GCGCGCTCGACGAGCGCATGGAGGCCGCCGCCGCCGCCGCGCCGCAGCGC
GCCGCCGAGAGGTCCGCGCGCCTGTTTGAGAAACAGGCGCTCATGGACGC
AGACGAGCGCGCGGCGCGCCGCGATGCGGCGGAGGCGGCGCCCGTGTACC
GGCGCGCGGCGCCCGAGGTCGTCGCCGCGCGCGCCGCGGCGGATGCGGCT
GCGGACGCTGCCGACGCCGCCGCGCTGCCGCGAGAGCGCATCGGGCTCAG
CGCGCTGCAGCGCGCGTACGTGCTGGCGACGGCGGTGAGCGCGGCGGTGG
GGTTCGGGCGCGGCACGCCTGCGGCCGTCGACGTGGGCCTGCCGGAGGCG
GCGGTGCAGGCGGCGGCCGCGGTGGGCTTCGCGCTGCTGCTGGCGAACGC
AGGGAGCGCGGTGCTTAGCGCGCGCATGGCGTCGCGGGGGGGGAGGGGGG
TGGTGCACTGGGCTTTGAAGGGGGCGCTGGCGGGGCCCGTGAGCGTGGCG
GAACTGCGGGGGTTGGTCGGTGTGGAGGGGGTGGTGCAGGCTGGCAGTGG
CGGCAGTGATAGTAGTTGA
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Coding sequence (CDS) from alignment at Contig_32:671151..672169+

>mRNA_5242 ID=mRNA_5242|Name=jgi.p|Trimin1|348878|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=885bp|location=Sequence derived from alignment at Contig_32:671151..672169+ (Tribonema minus UTEX_B_3156 )
ATGGCCGCTGAGAGCCCACAGACCATCATCAACCCCTCCGCCATCGGGCG
CCCCGACCGCTTCGACGACGACTTCGAGGAGCCGGTGGAATGGGACGGCG
CGCCGGACCCCCTCGAGTACAGCGAGCTGCGCGCGTACGGCTACCAGTAC
CTCGTGGAGCCCATCATGAATGCCGGCGGCTACATCGCTGTCTCCAACCG
ACTGGGCGTGCACGTGACGCCGAAGTCGCGGCGGCGCCGCGCGGCGTTCG
CGCCTGGCGAGGAGCCCAAGCTGCTGCGCCCCAGCGACGCCAAGGAGGGC
TTCCTGGCGCTTGGCAGCGCGCTCGACGAGCGCATGGAGGCCGCCGCCGC
CGCCGCGCCGCAGCGCGCCGCCGAGAGGTCCGCGCGCCTGTTTGAGAAAC
AGGCGCTCATGGACGCAGACGAGCGCGCGGCGCGCCGCGATGCGGCGGAG
GCGGCGCCCGTGTACCGGCGCGCGGCGCCCGAGGTCGTCGCCGCGCGCGC
CGCGGCGGATGCGGCTGCGGACGCTGCCGACGCCGCCGCGCTGCCGCGAG
AGCGCATCGGGCTCAGCGCGCTGCAGCGCGCGTACGTGCTGGCGACGGCG
GTGAGCGCGGCGGTGGGGTTCGGGCGCGGCACGCCTGCGGCCGTCGACGT
GGGCCTGCCGGAGGCGGCGGTGCAGGCGGCGGCCGCGGTGGGCTTCGCGC
TGCTGCTGGCGAACGCAGGGAGCGCGGTGCTTAGCGCGCGCATGGCGTCG
CGGGGGGGGAGGGGGGTGGTGCACTGGGCTTTGAAGGGGGCGCTGGCGGG
GCCCGTGAGCGTGGCGGAACTGCGGGGGTTGGTCGGTGTGGAGGGGGTGG
TGCAGGCTGGCAGTGGCGGCAGTGATAGTAGTTGA
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