mRNA_5231 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348870
Unique NamemRNA_5231
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|348870 vs. uniprot
Match: A0A836CE77_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE77_9STRA)

HSP 1 Score: 119 bits (298), Expect = 7.070e-34
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 MIAAAKADATSTFRPAVHLMLLVGTLGYEAEWYGLGRFHVAHKHHDIEEGAKLLAAQR 174
            MIAAAKADATSTFRPAVHLMLLVGTLGYEAEWYGLGRFHVAHKHHDIEEGAKLLAAQR
Sbjct:    1 MIAAAKADATSTFRPAVHLMLLVGTLGYEAEWYGLGRFHVAHKHHDIEEGAKLLAAQR 58
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348870 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CE77_9STRA7.070e-34100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_32contigContig_32:599142..600523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348870|estExt_Genemark1.C_Ctg_320076
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId349192
TrackFilteredModels1
ProteinId348870
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348870gene_5231Tribonema minus UTEX_B_3156 geneContig_32 599142..600523 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5231_1exon_5231_1Tribonema minus UTEX_B_3156 exonContig_32 599142..599173 +
exon_5231_2exon_5231_2Tribonema minus UTEX_B_3156 exonContig_32 600312..600523 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5231CDS_5231Tribonema minus UTEX_B_3156 CDSContig_32 599142..599173 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_5231UTR3_5231Tribonema minus UTEX_B_3156 three_prime_UTRContig_32 600457..600523 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348870Trimin1|348870|estExt_Genemark1.C_Ctg_320076Tribonema minus UTEX_B_3156 polypeptideContig_32 599142..600456 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5231 ID=mRNA_5231|Name=jgi.p|Trimin1|348870|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=244bp|location=Sequence derived from alignment at Contig_32:599142..600523+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGCTGCTGCCAAGGCGGACGCGACGTCAACGTTCAGGCCCGCCGT
GCACCTGATGCTGCTGGTGGGGACCCTCGGTTACGAAGCGGAGTGGTATG
GCCTCGGGCGCTTTCACGTAGCGCACAAGCATCATGACATCGAGGAGGGG
GCAAAGCTGCTGGCGGCGCAGCGCTGAGCGCATGGGGGGGACCACCTCTA
GCGGCAATGCGAATTGATGGGTGAGATGCTGTGCGAGGGAGGGG
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protein sequence of jgi.p|Trimin1|348870

>Trimin1|348870|estExt_Genemark1.C_Ctg_320076 ID=Trimin1|348870|estExt_Genemark1.C_Ctg_320076|Name=jgi.p|Trimin1|348870|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=59bp
MIAAAKADATSTFRPAVHLMLLVGTLGYEAEWYGLGRFHVAHKHHDIEEG
AKLLAAQR*
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mRNA from alignment at Contig_32:599142..600523+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5231 ID=mRNA_5231|Name=jgi.p|Trimin1|348870|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1382bp|location=Sequence derived from alignment at Contig_32:599142..600523+ (Tribonema minus UTEX_B_3156 )
ATGATTGCTGCTGCCAAGGCGGACGCGACGTCGTCACCCTCTTGTGGGGT
GCTTGTGGGAGCGCCAAGTTCAGAACCTAGCTATGAGCCTTGTGAAATGC
TCCTGGGCGCCAAGTTCAAAACCTAGCTATGAGCAAATCGAAACTTCAAA
TTCGCCGCCAACCAGCACCAGTATGAGCTTCCTGAAGAGAGTGTCGCTTG
CTCCTGAGGATTACATCAACCGGTTCGACAACTGGCGCAGTTCTTATCAC
GCGCGGAACTTCAGGCCTTCAAGAGTGGGGTGAGTGAGATTGAAGTACTC
TCATGTAATATAGTGATTGGCGGATCTGATTTCACGCCACGCTCGAGCAG
GCATCAAGAGCACAAATGTCAAGTTCAGGTCACTATGCACTGTGTCAGTA
CAGAAAGACTTCTGTACTTTAACATGATGGCTTTCGCGGAATGACGGAAC
TTCCTCGGTTTCAAACAGACAATCAAAACTTTGCACCTACTCGTCTTGCC
ACAGAGAGCCGGAAGTGTCCATACGGACACTTGAAATATCAAGCTGTGAT
TGTTGGTCACTGAGGCATTGGGTGAAAGTTGAACTTCAAGCTATCTCAAA
ATGCTTGTAGTCACAGAGACGAACGCATACGTGCCAACTCTGCCCAATGC
GTGTCGCTTGCTTGTCCTTGACAGTTGGCTCCATTGCTCAGCATTGCGTA
GCTTGTTTCGTGACGCAGACATCAACTTGAAGTCGAACGTCCACCATTGC
ACACAGCCAACACAGCCACCGCAGCAATCAAGGACTCCTCGAATGTGCGC
TCACGCTGGCTCACGCCAACCCGGGGCCTCTTTGCCATTGCATCGGCTGC
TTGCGTGCTGCGAAGGCACGAGTCTGCCTTGAACTGACTTGAATGGTGTA
GCTGCGTCCTGCACCTGACCACACGGCTTCGCCACGCGGTCTTCACGGCT
CTTGCTTCGCCTCACCGCCTGGAGGACCCTCATCCACCTACGCATTTGTT
GAGCGTTGCATGCGCTGGCGCAATGCGATTACAACAACGACAGTCACAAT
GGCAGTCACGACCCTGCAGCCTCAGCGTGCCCAGCAGCAATGCATATCAA
ATTCCCAGCACACACACGATCCCCCCTTTCCCCCCCCCCCCCTCCCGCCA
TCTGTCCCCCGCGACTGCAGAACGTTCAGGCCCGCCGTGCACCTGATGCT
GCTGGTGGGGACCCTCGGTTACGAAGCGGAGTGGTATGGCCTCGGGCGCT
TTCACGTAGCGCACAAGCATCATGACATCGAGGAGGGGGCAAAGCTGCTG
GCGGCGCAGCGCTGAGCGCATGGGGGGGACCACCTCTAGCGGCAATGCGA
ATTGATGGGTGAGATGCTGTGCGAGGGAGGGG
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Coding sequence (CDS) from alignment at Contig_32:599142..600523+

>mRNA_5231 ID=mRNA_5231|Name=jgi.p|Trimin1|348870|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=177bp|location=Sequence derived from alignment at Contig_32:599142..600523+ (Tribonema minus UTEX_B_3156 )
ATGATTGCTGCTGCCAAGGCGGACGCGACGTCAACGTTCAGGCCCGCCGT
GCACCTGATGCTGCTGGTGGGGACCCTCGGTTACGAAGCGGAGTGGTATG
GCCTCGGGCGCTTTCACGTAGCGCACAAGCATCATGACATCGAGGAGGGG
GCAAAGCTGCTGGCGGCGCAGCGCTGA
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