mRNA_5224 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|348865
Unique Name	mRNA_5224
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|348865 vs. uniprot
Match: A0A835YVG2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVG2_9STRA)

HSP 1 Score: 558 bits (1437), Expect = 2.200e-197
Identity = 340/340 (100.00%), Postives = 340/340 (100.00%), Query Frame = 2

Query:   20 MGDEPVREHAAEVEGGSGDEPDQAQEAGDQGEHEAAAMEGLRVSDDYADEDDEDGDDNYSGEPSAKRNHNNHSRDGDQGPHYSSPSSNGGGAKRPSDQNANPPSRILHVRGLPGGATKTDLEDVIGSLAFIVKAVMFKAQALLEMESKADAGRVVSYFSRNPAVIHDATIYISFSRSQELSDKNAISNVAPAGGKRPRSPAMGQYVAPFNSLGGGXXXXXXXXGGPRGGGMHMMVPGGGXXMNXXXXXXXXXXXXXXMMPFGGPVRGLSPDHSAMLQSAAMYLAQYNLPPAPGMLNIAYREQLEDSQREVQXXXXXXXXXXXXXXXXXXRRHPGGMGMRR 1039
            MGDEPVREHAAEVEGGSGDEPDQAQEAGDQGEHEAAAMEGLRVSDDYADEDDEDGDDNYSGEPSAKRNHNNHSRDGDQGPHYSSPSSNGGGAKRPSDQNANPPSRILHVRGLPGGATKTDLEDVIGSLAFIVKAVMFKAQALLEMESKADAGRVVSYFSRNPAVIHDATIYISFSRSQELSDKNAISNVAPAGGKRPRSPAMGQYVAPFNSLGGGXXXXXXXXGGPRGGGMHMMVPGGGXXMNXXXXXXXXXXXXXXMMPFGGPVRGLSPDHSAMLQSAAMYLAQYNLPPAPGMLNIAYREQLEDSQREVQXXXXXXXXXXXXXXXXXXRRHPGGMGMRR
Sbjct:    1 MGDEPVREHAAEVEGGSGDEPDQAQEAGDQGEHEAAAMEGLRVSDDYADEDDEDGDDNYSGEPSAKRNHNNHSRDGDQGPHYSSPSSNGGGAKRPSDQNANPPSRILHVRGLPGGATKTDLEDVIGSLAFIVKAVMFKAQALLEMESKADAGRVVSYFSRNPAVIHDATIYISFSRSQELSDKNAISNVAPAGGKRPRSPAMGQYVAPFNSLGGGXXXXXXXXGGPRGGGMHMMVPGGGXXMNXXXXXXXXXXXXXXMMPFGGPVRGLSPDHSAMLQSAAMYLAQYNLPPAPGMLNIAYREQLEDSQREVQXXXXXXXXXXXXXXXXXXRRHPGGMGMRR 340

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BLAST of jgi.p|Trimin1|348865 vs. uniprot
Match: A0A0B7A7G7_9EUPU (RRM domain-containing protein (Fragment) n=3 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7A7G7_9EUPU)

HSP 1 Score: 60.8 bits (146), Expect = 1.690e-7
Identity = 35/101 (34.65%), Postives = 55/101 (54.46%), Query Frame = 2

Query:  263 YSSPSSNGGGAKRPSDQNANPPSRILHVRGLPGGATKTDLEDVIGSLAFIVKAVMFKA--QALLEMESKADAGRVVSYFSRNPAVIHDATIYISFSRSQEL 559
            + SPS      K   D  ANP SR++H+R +PG A +TD+  +  S   +   ++ K   QA LE + +A A  +V+YF  NPA +    +++ FS  +EL
Sbjct:   55 HQSPSELTDAKKAKLDGTANPASRVVHIRSMPGEAGETDVVQLGMSFGKMTNVLVLKQKNQAFLEFQDEASAVAMVAYFQTNPAQVRLKPVFVQFSNHKEL 155

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BLAST of jgi.p|Trimin1|348865 vs. uniprot
Match: UPI001652677A (polypyrimidine tract-binding protein 2-like n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI001652677A)

HSP 1 Score: 63.9 bits (154), Expect = 2.060e-7
Identity = 33/86 (38.37%), Postives = 50/86 (58.14%), Query Frame = 2

Query:  308 DQNANPPSRILHVRGLPGGATKTDLEDVIGSLAFIVKAVMFKA--QALLEMESKADAGRVVSYFSRNPAVIHDATIYISFSRSQEL 559
            D   NPPSR++H+R LPG A +TD+  +  S   +   ++ K   QA LE + +A A  +VSYF  NPA +    +++ FS  +EL
Sbjct:  148 DGTINPPSRVVHIRSLPGEAGETDIVQLGMSFGKMTNVLVLKQKNQAFLEFQDEASAISMVSYFQANPAQVRFKPVFVQFSNHKEL 233

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BLAST of jgi.p|Trimin1|348865 vs. uniprot
Match: UPI00065B6221 (polypyrimidine tract-binding protein 2 isoform X1 n=4 Tax=Aplysia californica TaxID=6500 RepID=UPI00065B6221)

HSP 1 Score: 63.9 bits (154), Expect = 2.990e-7
Identity = 33/86 (38.37%), Postives = 50/86 (58.14%), Query Frame = 2

Query:  308 DQNANPPSRILHVRGLPGGATKTDLEDVIGSLAFIVKAVMFKA--QALLEMESKADAGRVVSYFSRNPAVIHDATIYISFSRSQEL 559
            D   NPPSR++H+R LPG A +TD+  +  S   +   ++ K   QA LE + +A A  +VSYF  NPA +    +++ FS  +EL
Sbjct:  148 DGTINPPSRVVHIRSLPGEAGETDIVQLGMSFGKMTNVLVLKQKNQAFLEFQDEASAISMVSYFQANPAQVRFKPVFVQFSNHKEL 233

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BLAST of jgi.p|Trimin1|348865 vs. uniprot
Match: A0A1X7UYZ1_AMPQE (Uncharacterized protein n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UYZ1_AMPQE)

HSP 1 Score: 62.0 bits (149), Expect = 9.770e-7
Identity = 40/106 (37.74%), Postives = 61/106 (57.55%), Query Frame = 2

Query:  293 AKRPSDQNANP-PSRILHVRGLPGGATKTDLEDVIGSLAFIVKAVMF--KAQALLEMESKADAGRVVSYFSRNPAVIHDATIYISFSRSQELSDKNAISNVAPAGG 601
            AK+P  + A P  SR+LH+R LP  AT+ D+  ++ +   + K ++   K QA +E+   + A  +V  FS  PA I D T+YI FS+ QEL  K+  + +A  GG
Sbjct:    7 AKKPRMEEAVPVTSRVLHIRNLPSDATEADVFMLMSTYGAVSKVLLLRQKNQAFVELAELSTACALVDAFSTRPAQIKDRTVYIQFSKHQEL--KSGSTPIANPGG 110

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BLAST of jgi.p|Trimin1|348865 vs. uniprot
Match: A0A0X3NPV4_SCHSO (Polypyrimidine tract-binding protein 1 n=4 Tax=Diphyllobothriidae TaxID=28843 RepID=A0A0X3NPV4_SCHSO)

HSP 1 Score: 58.9 bits (141), Expect = 1.120e-5
Identity = 31/81 (38.27%), Postives = 48/81 (59.26%), Query Frame = 2

Query:  323 PPSRILHVRGLPGGATKTDLEDVIGSLAFIVKAVMFKA--QALLEMESKADAGRVVSYFSRNPAVIHDATIYISFSRSQEL 559
            PPS+++HVRGLP  AT+ D+  +      +V  V+ K   QAL+EME    A  +V+YF   PA++H   + + FS+ + L
Sbjct:   19 PPSKVVHVRGLPSDATEQDIALLAIPFGQVVNMVLSKRNNQALIEMELLERAIEMVNYFQEYPALLHGKQLILQFSKHEHL 99

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BLAST of jgi.p|Trimin1|348865 vs. uniprot
Match: A0A2C9K9Y6_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9K9Y6_BIOGL)

HSP 1 Score: 58.9 bits (141), Expect = 1.130e-5
Identity = 29/81 (35.80%), Postives = 48/81 (59.26%), Query Frame = 2

Query:  323 PPSRILHVRGLPGGATKTDLEDVIGSLAFIVKAVMFKA--QALLEMESKADAGRVVSYFSRNPAVIHDATIYISFSRSQEL 559
            PPSR++H+R LPG A +TD+  +  S   +   ++ K   QA LE + ++ A  +V+YF  NPA +    +++ FS  +EL
Sbjct:  116 PPSRVVHIRSLPGEAGETDIVQLGMSFGKMTNVLVLKQKNQAFLEFQDESSAVAMVAYFQANPAQVRLKPVFVQFSNHKEL 196

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BLAST of jgi.p|Trimin1|348865 vs. uniprot
Match: A0A183S862_SCHSO (Uncharacterized protein n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183S862_SCHSO)

HSP 1 Score: 58.9 bits (141), Expect = 1.130e-5
Identity = 31/81 (38.27%), Postives = 48/81 (59.26%), Query Frame = 2

Query:  323 PPSRILHVRGLPGGATKTDLEDVIGSLAFIVKAVMFKA--QALLEMESKADAGRVVSYFSRNPAVIHDATIYISFSRSQEL 559
            PPS+++HVRGLP  AT+ D+  +      +V  V+ K   QAL+EME    A  +V+YF   PA++H   + + FS+ + L
Sbjct:    7 PPSKVVHVRGLPSDATEQDIALLAIPFGQVVNMVLSKRNNQALIEMELLERAIEMVNYFQEYPALLHGKQLILQFSKHEHL 87

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BLAST of jgi.p|Trimin1|348865 vs. uniprot
Match: A0A2C9K9T3_BIOGL (Uncharacterized protein n=7 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9K9T3_BIOGL)

HSP 1 Score: 58.9 bits (141), Expect = 1.140e-5
Identity = 29/81 (35.80%), Postives = 48/81 (59.26%), Query Frame = 2

Query:  323 PPSRILHVRGLPGGATKTDLEDVIGSLAFIVKAVMFKA--QALLEMESKADAGRVVSYFSRNPAVIHDATIYISFSRSQEL 559
            PPSR++H+R LPG A +TD+  +  S   +   ++ K   QA LE + ++ A  +V+YF  NPA +    +++ FS  +EL
Sbjct:  129 PPSRVVHIRSLPGEAGETDIVQLGMSFGKMTNVLVLKQKNQAFLEFQDESSAVAMVAYFQANPAQVRLKPVFVQFSNHKEL 209

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|348865 vs. uniprot

BLAST of jgi.p|Trimin1|348865 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9


Match Name	E-value	Identity	Description
A0A835YVG2_9STRA	2.200e-197	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A0B7A7G7_9EUPU	1.690e-7	34.65	RRM domain-containing protein (Fragment) n=3 Tax=A...	[more]
UPI001652677A	2.060e-7	38.37	polypyrimidine tract-binding protein 2-like n=1 Ta...	[more]
UPI00065B6221	2.990e-7	38.37	polypyrimidine tract-binding protein 2 isoform X1 ...	[more]
A0A1X7UYZ1_AMPQE	9.770e-7	37.74	Uncharacterized protein n=2 Tax=Amphimedon queensl...	[more]
A0A0X3NPV4_SCHSO	1.120e-5	38.27	Polypyrimidine tract-binding protein 1 n=4 Tax=Dip...	[more]
A0A2C9K9Y6_BIOGL	1.130e-5	35.80	Uncharacterized protein n=1 Tax=Biomphalaria glabr...	[more]
A0A183S862_SCHSO	1.130e-5	38.27	Uncharacterized protein n=1 Tax=Schistocephalus so...	[more]
A0A2C9K9T3_BIOGL	1.140e-5	35.80	Uncharacterized protein n=7 Tax=Biomphalaria glabr...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_32	contig	Contig_32:547140..551368 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|348865\|estExt_Genemark1.C_Ctg_320070
BRITE	ko00000,ko00001,ko03000,ko03019,ko03041,ko03310
KEGG Pathway	ko03320,ko04151,ko04659,ko04919,ko04920,ko04932,ko04976,ko05160,ko05200,ko05202,ko05216,ko05222,ko05223,ko05226,map03320,map04151,map04659,map04919,map04920,map04932,map04976,map05160,map05200,map05202,map05216,map05222,map05223,map05226
KEGG ko	ko:K08524,ko:K13218,ko:K14948,ko:K17844
GOs	GO:0000003,GO:0000014,GO:0000226,GO:0000245,GO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0000900,GO:0000956,GO:0001067,GO:0001069,GO:0002009,GO:0002165,GO:0002791,GO:0002793,GO:0003006,GO:0003205,GO:0003231,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003723,GO:0003727,GO:0003729,GO:0003730,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006355,GO:0006357,GO:0006376,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007163,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007292,GO:0007308,GO:0007309,GO:0007319,GO:0007349,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007444,GO:0007472,GO:0007476,GO:0007507,GO:0007552,GO:0007560,GO:0008103,GO:0008150,GO:0008152,GO:0008187,GO:0008380,GO:0008543,GO:0008586,GO:0008587,GO:0009056,GO:0009057,GO:0009653,GO:0009719,GO:0009791,GO:0009798,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009987,GO:0009994,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010638,GO:0010646,GO:0010647,GO:0010720,GO:0010817,GO:0010975,GO:0010976,GO:0016032,GO:0016043,GO:0016070,GO:0016071,GO:0016325,GO:0016787,GO:0016788,GO:0017148,GO:0019080,GO:0019081,GO:0019219,GO:0019220,GO:0019222,GO:0019439,GO:0019953,GO:0021510,GO:0021549,GO:0021700,GO:0022008,GO:0022037,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023052,GO:0023056,GO:0030154,GO:0030371,GO:0030424,GO:0030426,GO:0030427,GO:0030902,GO:0030951,GO:0030952,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031330,GO:0031344,GO:0031346,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032024,GO:0032268,GO:0032269,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0032991,GO:0033043,GO:0033119,GO:0033267,GO:0034248,GO:0034249,GO:0034250,GO:0034622,GO:0034641,GO:0034655,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0035303,GO:0035304,GO:0035306,GO:0035307,GO:0036002,GO:0036477,GO:0042127,GO:0042221,GO:0042995,GO:0043005,GO:0043025,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043487,GO:0043488,GO:0043489,GO:0043565,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044297,GO:0044306,GO:0044344,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044463,GO:0044464,GO:0044703,GO:0045182,GO:0045595,GO:0045596,GO:0045597,GO:0045664,GO:0045666,GO:0045727,GO:0045893,GO:0045934,GO:0045935,GO:0045937,GO:0045944,GO:0046011,GO:0046483,GO:0046700,GO:0046883,GO:0046887,GO:0048024,GO:0048025,GO:0048232,GO:0048255,GO:0048468,GO:0048469,GO:0048477,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048583,GO:0048584,GO:0048599,GO:0048609,GO:0048646,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0048869,GO:0050684,GO:0050686,GO:0050708,GO:0050714,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050796,GO:0050848,GO:0050850,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051093,GO:0051094,GO:0051128,GO:0051130,GO:0051147,GO:0051148,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051222,GO:0051223,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051704,GO:0051716,GO:0051960,GO:0051962,GO:0060255,GO:0060284,GO:0060322,GO:0060429,GO:0060562,GO:0061013,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070201,GO:0070848,GO:0070884,GO:0070886,GO:0070887,GO:0070935,GO:0071310,GO:0071363,GO:0071495,GO:0071704,GO:0071774,GO:0071826,GO:0071840,GO:0072359,GO:0075522,GO:0080090,GO:0090079,GO:0090087,GO:0090276,GO:0090277,GO:0090304,GO:0090305,GO:0097159,GO:0097458,GO:0106056,GO:0106058,GO:0120025,GO:0120035,GO:0120038,GO:0140097,GO:0150034,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902369,GO:1902373,GO:1902531,GO:1902533,GO:1902680,GO:1903311,GO:1903312,GO:1903506,GO:1903508,GO:1903530,GO:1903532,GO:1904409,GO:1904411,GO:1904951,GO:1990904,GO:2000026,GO:2000112,GO:2000113,GO:2000177,GO:2001141
Preferred name	PTBP2
Description	regulation of secretory granule organization
COG category	A
Max annot lvl	33208\|Metazoa
EggNOG OGs	KOG1190@1\|root,KOG1190@2759\|Eukaryota,38H7H@33154\|Opisthokonta,3B9RH@33208\|Metazoa,3CRKU@33213\|Bilateria
Evalue	1.78e-08
Seed ortholog	6500.XP_005105942.1
Hectar predicted targeting category	other localisation
TranscriptId	349187
Track	FilteredModels1
ProteinId	348865

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348865	gene_5224	Tribonema minus UTEX_B_3156	gene	Contig_32 547140..551368 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348865	Trimin1\|348865\|estExt_Genemark1.C_Ctg_320070	Tribonema minus UTEX_B_3156	polypeptide	Contig_32 547159..551143 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_5224_1	exon_5224_1	Tribonema minus UTEX_B_3156	exon	Contig_32 547140..547249 +
exon_5224_2	exon_5224_2	Tribonema minus UTEX_B_3156	exon	Contig_32 547466..547728 +
exon_5224_3	exon_5224_3	Tribonema minus UTEX_B_3156	exon	Contig_32 548153..548295 +
exon_5224_4	exon_5224_4	Tribonema minus UTEX_B_3156	exon	Contig_32 549083..549389 +
exon_5224_5	exon_5224_5	Tribonema minus UTEX_B_3156	exon	Contig_32 550925..551368 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_5224	UTR5_5224	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_32 547140..547158 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_5224	CDS_5224	Tribonema minus UTEX_B_3156	CDS	Contig_32 547159..547249 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_5224	UTR3_5224	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_32 551144..551368 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_32:547140..551368+
coding sequence from alignment at Contig_32:547140..551368+

spliced messenger RNA

>mRNA_5224 ID=mRNA_5224|Name=jgi.p|Trimin1|348865|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1267bp|location=Sequence derived from alignment at Contig_32:547140..551368+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCTCAAAGCACATTTGGATATGGGCGACGAGCCCGTCAGGGAGCACGCTG
CTGAGGTGGAAGGGGGAAGCGGCGACGAGCCCGATCAAGCTCAAGAAGCG
GGGGACCAAGGCGAGCACGAAGCCGCTGCCATGGAGGGCCTGAGAGTCAG
CGATGACTACGCAGACGAGGACGACGAGGATGGCGACGACAATTACTCTG
GCGAGCCCAGCGCCAAACGCAATCACAACAATCACAGTAGAGATGGCGAT
CAGGGACCGCACTACTCCTCTCCCTCTAGCAATGGCGGCGGTGCCAAGCG
GCCGTCGGACCAGAACGCCAACCCACCATCGCGGATACTGCACGTTCGGG
GCTTGCCGGGGGGTGCAACAAAGACGGACTTGGAGGACGTGATCGGATCG
CTCGCCTTCATCGTGAAGGCGGTCATGTTCAAGGCGCAGGCGCTGCTGGA
GATGGAGAGCAAGGCGGATGCTGGCCGCGTCGTGAGCTACTTCTCACGCA
ACCCTGCGGTGATCCACGACGCCACCATATACATCAGCTTCAGCCGGTCG
CAGGAGCTGTCGGACAAGAACGCCATCAGCAACGTGGCGCCGGCGGGCGG
CAAGCGTCCACGGAGCCCTGCCATGGGCCAGTATGTAGCGCCGTTCAACT
CATTGGGCGGCGGGGGGGGGGGTATGGGTATGGGTATGGGGGGACCTAGA
GGGGGGGGGATGCACATGATGGTCCCTGGCGGCGGCGGCGGTATGAATGG
GATGAATGGGGCAAGAGGGGGGGGCGGCGGCGGGGGGGGGATGATGCCGT
TTGGCGGGCCGGTGCGAGGGCTGTCACCGGATCACTCCGCGATGCTGCAG
TCCGCGGCCATGTACCTCGCGCAGTACAACCTGCCGCCGGCGCCCGGCAT
GCTCAACATTGCGTACCGCGAGCAGCTGGAGGACTCGCAGCGCGAAGTGC
AGCAGCAGCAGCAGCAGGCGCAGCAGCCGCCGCCGCCTCAGTACATGCAG
CCACCGCGCAGGCATCCGGGGGGTATGGGTATGCGGAGGTGATGGCGGCG
CGGGGCCCCCTGTCCCCCTCCCCCCTCCCCGTTCTGCCCCCTCATTTGCC
CCTTTGGGCGTCAGGCGCGCAGACGCTAGAAAATAGTTCTGCTGACAGAG
CGGCTCTTCATGCTGTGCTTGCTGGCATGCACGGTCAGCTTCAACTGCTG
AGCGGCGCCGGCCCCCTGAGATGACACTTCAACATGAAGTTTGAAGCAGA
GTGGGGCCTGGTAGGGG

protein sequence of jgi.p|Trimin1|348865

>Trimin1|348865|estExt_Genemark1.C_Ctg_320070 ID=Trimin1|348865|estExt_Genemark1.C_Ctg_320070|Name=jgi.p|Trimin1|348865|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=341bp
MGDEPVREHAAEVEGGSGDEPDQAQEAGDQGEHEAAAMEGLRVSDDYADE
DDEDGDDNYSGEPSAKRNHNNHSRDGDQGPHYSSPSSNGGGAKRPSDQNA
NPPSRILHVRGLPGGATKTDLEDVIGSLAFIVKAVMFKAQALLEMESKAD
AGRVVSYFSRNPAVIHDATIYISFSRSQELSDKNAISNVAPAGGKRPRSP
AMGQYVAPFNSLGGGGGGMGMGMGGPRGGGMHMMVPGGGGGMNGMNGARG
GGGGGGGMMPFGGPVRGLSPDHSAMLQSAAMYLAQYNLPPAPGMLNIAYR
EQLEDSQREVQQQQQQAQQPPPPQYMQPPRRHPGGMGMRR*

mRNA from alignment at Contig_32:547140..551368+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5224 ID=mRNA_5224|Name=jgi.p|Trimin1|348865|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4229bp|location=Sequence derived from alignment at Contig_32:547140..551368+ (Tribonema minus UTEX_B_3156 )
GCTCAAAGCACATTTGGATATGGGCGACGAGCCCGTCAGGGAGCACGCTG
CTGAGGTGGAAGGGGGAAGCGGCGACGAGCCCGATCAAGCTCAAGAAGCG
GGGGACCAAGGTGAGAGGATCACCCATGTTAGACGGATTTTCAAGGGGCA
TGAAGACGCGAGCCGTGAGGGCCCTTTGCAATAACCATGTGGGCATTGTT
GTGTTGCGTGCGTCAAATTTGCATAATTTCATTCCAGCCAAGGCACTACC
ATGGGCGCCAAGCCGCACAGCTTTCCTTTCTCTCTCAAGTTCAACACTTT
GGGGTGTTGGCCCTGTTGTCCTGCAGGCGAGCACGAAGCCGCTGCCATGG
AGGGCCTGAGAGTCAGCGATGACTACGCAGACGAGGACGACGAGGATGGC
GACGACAATTACTCTGGCGAGCCCAGCGCCAAACGCAATCACAACAATCA
CAGTAGAGATGGCGATCAGGGACCGCACTACTCCTCTCCCTCTAGCAATG
GCGGCGGTGCCAAGCGGCCGTCGGACCAGAACGCCAACCCACCATCGCGG
ATACTGCACGTTCGGGGCTTGCCGGGGGGTGCAACAAAGGTGACGCGCTG
CTGCAGCCCATTGCGTGCCGTCTGCATACATGAGCGGTGCTTGAGTACAA
AGTACAGGAGTTCATGAGTGCCTGCAATGGCACCAACATGTGCGTGTGCC
TTGCTCTGCACCCATGAATGCGGTCATAAGGAGACACACGGATATAACAT
GTATCAGCTTCCTCTGCCGCGCGCCTTTTGGTGCCATGGTCACCGTCTTT
CCTCGTGTCTTTACCGGCTTTGTACCTCATCACGCTTGTTTAATTCGTGC
CCGCCGCATGCTGAGGGCAGAGTAAAGGCCAACATGTTGTTTTGCACTCA
TGTACAAATATCACTTACACAAAGGCTGCTTGCACTCCGTGCGCAACAAG
TATATGATGACACGATGAGCCCTTCACACACACACTGGTTGCTGCCCCCC
TGTCGTAAATCAGACGGACTTGGAGGACGTGATCGGATCGCTCGCCTTCA
TCGTGAAGGCGGTCATGTTCAAGGCGCAGGCGCTGCTGGAGATGGAGAGC
AAGGCGGATGCTGGCCGCGTCGTGAGCTACTTCTCACGCAACCCTGCGGT
GATCCAGTGAGTAGTACACGCGACAAACTCAACTTTGCAGTTGCATCCGT
AAGGACTGCTCTGCGATGCTGTTGGTACATTGTGCTGATGGTGTGGGCCA
GGAGTAGGTGAAGGATGGCACGCGAGGGGCATGTCATGTGTGCCGCTGAC
GCTCTTCGCTGTGCGAGCGCTGCCCTCTTTGAAGGACTCGCGGACGTCAT
TGACGACGTTGCTGGTCATTGCGCTGTACAGCTTTGCTGGCATGTATTTT
TTCCCAGTGTATCGCTCCAAAGCATGCGCCAGTACAAGTAACTGGTCCAA
CTAACGCATTGTGCAGCATAGCATGCAGTCACGCCGCATCACAGAGGTCA
GGACTGAGGGTGCACACATACTTCGAAGTGATTTGAACGCAGGCAAACTC
CGCCGCAATCAGATACTTTGAAGTACCTAGGTGTGTTGACTGAGTCTGCA
AGACACAGACATGAACTCTGCGCCGACGTTTCCTGAGACATCTTGCGCTG
ACCTAACATTACGCCAGTCGAGTAAGTGCAGCAGCATTGATATAAGACTG
CCGCACGGCGATCGCGCACTTTCCGTCCCCTTCTTCCCCCCCTCTCAAGC
CCCATTCACCCCCCCTTCACACCCTACTACATACATGCGAACACCAAAAA
CACTGATACAGACACACACTGCTTGCACCGGTCTGCTGCACTGCCGCAGC
AACATCCATGCGCACACCACCTCGTGAGACGTCATCGCTTTAATTTATCA
ATCTGCCGTTGCTTGTTTTCATCGATCCGTCGCACCGACGCAGCGACGCC
ACCATATACATCAGCTTCAGCCGGTCGCAGGAGCTGTCGGACAAGAACGC
CATCAGCAACGTGGCGCCGGCGGGCGGCAAGCGTCCACGGAGCCCTGCCA
TGGGCCAGTATGTAGCGCCGTTCAACTCATTGGGCGGCGGGGGGGGGGGT
ATGGGTATGGGTATGGGGGGACCTAGAGGGGGGGGGATGCACATGATGGT
CCCTGGCGGCGGCGGCGGTATGAATGGGATGAATGGGGCAAGAGGGGGGG
GCGGCGGCGGGGGGGGGATGATGCCGTTTGGCGGGCCGGTGCGAGGGCTG
GTGAGTCAACAAGTCTGAGTCTTGATTGGTGTTCAAAGTGCACCGCGGCG
CGGAGTGTGCATGAGGCTGTGCTCTCACTGCAAGTAGCAATGCTGGCATG
CCATGCGTCACAGGTTTGATGACGCGGCAGCGTCTGTGACCGTAAGATGC
CAAGTGCGTCAATTTACCTGACGTACACTGAGAAAAGCCTTCGTTTCAGC
AGCAGGCAGTTGAAGTTGAAGTCAAGTGCCCCAGCCCGTAAACTGGTTCT
TCACACCAGGGGCCTGGCTGCCTTGCAGTCGAGTGCTCACTGCGCAATGA
CTGCCGGGAGCACGTACCTGCGCTCACACTGCTGTCGGAACATCACGATT
AGGGTTAGCATCAGTGAGGGACTGGGTTGGGGTCAGCGTTGGCAATCGAC
GACGTTGGCACTGCTGTTGGGCTTGTAGCCTAGGCAGCAGTCATGGCTGG
CGGGCAAGGCAGAGGAGGGATGGATTTAGAATAAGGGTTAGGGTTAGAAA
AGGTTGACAGCAATCGGCTTACCTGCCGCAACGTTGCGCTTTGGAGGCGA
TCTTCTGTGCCTCGTTGACAGTTGGAAGATGGCAATGGGCACGTCAAACG
CGGCACTGTCCTGCAGCGGACGTGCTGCCTTGTTCTACACTCAGGGCATG
GAGCATGTGCATGCAGCTTTGCCATGCGGCGCATGATGATCTGTTGTGCT
GCATAAAGGGTAAGTATACATTGGGTGAGGTTTGGCGTGCTTTGCGCGTC
AGGGACAATACACGTATGATTCAGCGGTGCACTCCAGTGTTGTGAGGGTA
ACGGGCAGCGGTTTGTAGTGGGGCTGGCCTTGATCCTCAGCGAACCTACG
TCACTTCCGCGTGACAGTGTGTACTGTAGGTATGTACGGCGTAATGGTCG
TGCAAGAGTAGGATGTACCATGCGCTCACCGACTTCACAGAAGATGATCA
CTACCGCGTGTGGCCATTACGAGTGTCGTGTGCGGCCACTCAGCGCGGCG
TGCCAGGCGTGCACCCACCTGCATGGACCCCAAACTGCTCTGCTGTCACC
GCCAGGCTACTGACTTCGCGCATCAAATGATTCGTTGTGGTTGTGTGATG
TCGCTGGCGCGCGGTTTGTGCACCAAAACTATGTAGCGCGCGCCTCTTGT
GGGAATGCCATCACTCGTTCCGCCGCTGACAGCAGCCATGAGACGTTGTG
CTCGTTACAGCAATTCAGTGTTGTACATGTGGCCTGTGATAGTTGCAGTT
GCAGTTGCCATGATGCATTGGTCCCCCCCTGTCGACTGCCCCCTCCCCCC
CCACCCCCCAACCCCGCAAGCCCCCCTCCCTTGGAGTGTGCACGCGTCAT
CGCGCCGCGCTGCCGCCCAACCACGCAGTACCACCACTGCCGCCGACCCG
TTTCCTTCAGTGCTGCATTGAAGCATGTTGGCTTTGAAATGTGCAAAACT
GAGGAGCGCCATGGCAGCATTGGCTCATGTCATCATCATTATCTTTCCCC
TCCCCCCTTGCCCCCGCCCCCCCCCCCGAATGCAGTCACCGGATCACTCC
GCGATGCTGCAGTCCGCGGCCATGTACCTCGCGCAGTACAACCTGCCGCC
GGCGCCCGGCATGCTCAACATTGCGTACCGCGAGCAGCTGGAGGACTCGC
AGCGCGAAGTGCAGCAGCAGCAGCAGCAGGCGCAGCAGCCGCCGCCGCCT
CAGTACATGCAGCCACCGCGCAGGCATCCGGGGGGTATGGGTATGCGGAG
GTGATGGCGGCGCGGGGCCCCCTGTCCCCCTCCCCCCTCCCCGTTCTGCC
CCCTCATTTGCCCCTTTGGGCGTCAGGCGCGCAGACGCTAGAAAATAGTT
CTGCTGACAGAGCGGCTCTTCATGCTGTGCTTGCTGGCATGCACGGTCAG
CTTCAACTGCTGAGCGGCGCCGGCCCCCTGAGATGACACTTCAACATGAA
GTTTGAAGCAGAGTGGGGCCTGGTAGGGG

Coding sequence (CDS) from alignment at Contig_32:547140..551368+

>mRNA_5224 ID=mRNA_5224|Name=jgi.p|Trimin1|348865|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1023bp|location=Sequence derived from alignment at Contig_32:547140..551368+ (Tribonema minus UTEX_B_3156 )
ATGGGCGACGAGCCCGTCAGGGAGCACGCTGCTGAGGTGGAAGGGGGAAG
CGGCGACGAGCCCGATCAAGCTCAAGAAGCGGGGGACCAAGGCGAGCACG
AAGCCGCTGCCATGGAGGGCCTGAGAGTCAGCGATGACTACGCAGACGAG
GACGACGAGGATGGCGACGACAATTACTCTGGCGAGCCCAGCGCCAAACG
CAATCACAACAATCACAGTAGAGATGGCGATCAGGGACCGCACTACTCCT
CTCCCTCTAGCAATGGCGGCGGTGCCAAGCGGCCGTCGGACCAGAACGCC
AACCCACCATCGCGGATACTGCACGTTCGGGGCTTGCCGGGGGGTGCAAC
AAAGACGGACTTGGAGGACGTGATCGGATCGCTCGCCTTCATCGTGAAGG
CGGTCATGTTCAAGGCGCAGGCGCTGCTGGAGATGGAGAGCAAGGCGGAT
GCTGGCCGCGTCGTGAGCTACTTCTCACGCAACCCTGCGGTGATCCACGA
CGCCACCATATACATCAGCTTCAGCCGGTCGCAGGAGCTGTCGGACAAGA
ACGCCATCAGCAACGTGGCGCCGGCGGGCGGCAAGCGTCCACGGAGCCCT
GCCATGGGCCAGTATGTAGCGCCGTTCAACTCATTGGGCGGCGGGGGGGG
GGGTATGGGTATGGGTATGGGGGGACCTAGAGGGGGGGGGATGCACATGA
TGGTCCCTGGCGGCGGCGGCGGTATGAATGGGATGAATGGGGCAAGAGGG
GGGGGCGGCGGCGGGGGGGGGATGATGCCGTTTGGCGGGCCGGTGCGAGG
GCTGTCACCGGATCACTCCGCGATGCTGCAGTCCGCGGCCATGTACCTCG
CGCAGTACAACCTGCCGCCGGCGCCCGGCATGCTCAACATTGCGTACCGC
GAGCAGCTGGAGGACTCGCAGCGCGAAGTGCAGCAGCAGCAGCAGCAGGC
GCAGCAGCCGCCGCCGCCTCAGTACATGCAGCCACCGCGCAGGCATCCGG
GGGGTATGGGTATGCGGAGGTGA