mRNA_5218 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|348859
Unique Name	mRNA_5218
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|348859 vs. uniprot
Match: A0A836CFY7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFY7_9STRA)

HSP 1 Score: 752 bits (1942), Expect = 1.430e-269
Identity = 474/474 (100.00%), Postives = 474/474 (100.00%), Query Frame = 1

Query:    1 MLSREGPIVQVRNPPFAAAALAKREGGALTHPHSHTASPSQLKRPLPPPTSGSSQASGGDGSVVAEAAIPDTVDQSQVSCLLVFAEMRAWRSVAAAAEALPASGALSPSDAADVRMCRATALLRMRHVDDAQAELQRVQRASAAAATPAPFAAELLALQIGLFKGTLSSDDAIASLGTLKRALDARIAAAAASPATESGYTXXXXXXXXXXXLTAQEAVRWRRRVRTTLASAFQVMGRWRAALAELQANDDDLRGVLASGXXXXXXXXXXXXXXLAARGEVNSRIGRVFLQIGDVHSATTFYNRAERMWAAAGSSGAGAADAALHRAQALINAGLLAFARSDFRGAAERHERAAAEARTARTLAAGXXXXXXXXXXXXXXXVEXXXXXALLAAAASNAALAHLYACDVARALAAAEGAAREDPAAALRDTTAFNLCTLYDLGGGPAGSATRKAALAALAQRFSLDDVDVGSFRM 1422
            MLSREGPIVQVRNPPFAAAALAKREGGALTHPHSHTASPSQLKRPLPPPTSGSSQASGGDGSVVAEAAIPDTVDQSQVSCLLVFAEMRAWRSVAAAAEALPASGALSPSDAADVRMCRATALLRMRHVDDAQAELQRVQRASAAAATPAPFAAELLALQIGLFKGTLSSDDAIASLGTLKRALDARIAAAAASPATESGYTXXXXXXXXXXXLTAQEAVRWRRRVRTTLASAFQVMGRWRAALAELQANDDDLRGVLASGXXXXXXXXXXXXXXLAARGEVNSRIGRVFLQIGDVHSATTFYNRAERMWAAAGSSGAGAADAALHRAQALINAGLLAFARSDFRGAAERHERAAAEARTARTLAAGXXXXXXXXXXXXXXXVEXXXXXALLAAAASNAALAHLYACDVARALAAAEGAAREDPAAALRDTTAFNLCTLYDLGGGPAGSATRKAALAALAQRFSLDDVDVGSFRM
Sbjct:    1 MLSREGPIVQVRNPPFAAAALAKREGGALTHPHSHTASPSQLKRPLPPPTSGSSQASGGDGSVVAEAAIPDTVDQSQVSCLLVFAEMRAWRSVAAAAEALPASGALSPSDAADVRMCRATALLRMRHVDDAQAELQRVQRASAAAATPAPFAAELLALQIGLFKGTLSSDDAIASLGTLKRALDARIAAAAASPATESGYTXXXXXXXXXXXLTAQEAVRWRRRVRTTLASAFQVMGRWRAALAELQANDDDLRGVLASGXXXXXXXXXXXXXXLAARGEVNSRIGRVFLQIGDVHSATTFYNRAERMWAAAGSSGAGAADAALHRAQALINAGLLAFARSDFRGAAERHERAAAEARTARTLAAGXXXXXXXXXXXXXXXVEXXXXXALLAAAASNAALAHLYACDVARALAAAEGAAREDPAAALRDTTAFNLCTLYDLGGGPAGSATRKAALAALAQRFSLDDVDVGSFRM 474

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BLAST of jgi.p|Trimin1|348859 vs. uniprot
Match: F0WJF3_9STRA (Uncharacterized protein AlNc14C121G6682 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WJF3_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.260e-5
Identity = 60/194 (30.93%), Postives = 86/194 (44.33%), Query Frame = 1

Query:  841 VNSRIGRVFLQIGDVHSATTFYNRAERMWAAAGSSGAGAADAALHRAQALINAGLLAFARSDFRGAAERHERAAAEARTARTLAAGXXXXXXXXXXXXXXXVEXXXXXALLAAAASNAALAHLYACDVARALAAAEGAAREDPAAALRDTTAFNLCTLYDLGGGPAGSATRKAALAALAQRFSLDDVDVGSFRM 1422
            V SRIGR+++Q+GD+ SA   +     +     S      +  LH AQ L+N GLL  +R + + A E              LA G               +       L+ AA +N A+  LY+CDV  A+A  E   R  P   L +   FNL +LYDL    A S  RK  L  +A  + L+ +D  +FR+
Sbjct:  585 VLSRIGRIYMQLGDIESAEMVFQHVRHLSEKLPSH----QNQTLH-AQVLMNKGLLLLSRDNVQEAIEIFSSI-----LHLELANGQTKNSQWSNEIVLDDLLLEQED-LICAAVNNYAICALYSCDVHGAVAMLEKMIRLSPVRFLNEVVVFNLSSLYDLIYDNANSTNRKEMLKRIADAYDLEHIDAAAFRI 767

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|348859 vs. uniprot

BLAST of jgi.p|Trimin1|348859 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A836CFY7_9STRA	1.430e-269	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
F0WJF3_9STRA	1.260e-5	30.93	Uncharacterized protein AlNc14C121G6682 n=1 Tax=Al...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_32	contig	Contig_32:518627..520343 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|348859\|estExt_Genemark1.C_Ctg_320064
BRITE	ko00000,ko00001,ko00002,ko03032,ko03400,ko04131,ko04147
KEGG Module	M00291,M00292,M00295
KEGG Pathway	ko03440,ko03450,ko04218,map03440,map03450,map04218
KEGG ko	ko:K10865,ko:K17087,ko:K20309
GOs	GO:0000775,GO:0000776,GO:0003674,GO:0003824,GO:0004175,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0006810,GO:0006888,GO:0006996,GO:0007030,GO:0007049,GO:0007059,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0010256,GO:0016043,GO:0016192,GO:0016787,GO:0017016,GO:0017112,GO:0017137,GO:0019538,GO:0019899,GO:0022402,GO:0022607,GO:0030008,GO:0031267,GO:0032879,GO:0032880,GO:0032991,GO:0033043,GO:0033044,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048193,GO:0048518,GO:0050000,GO:0050789,GO:0050794,GO:0051020,GO:0051128,GO:0051179,GO:0051234,GO:0051259,GO:0051303,GO:0051310,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060341,GO:0065003,GO:0065007,GO:0065009,GO:0070011,GO:0071704,GO:0071840,GO:0090230,GO:0090234,GO:0098687,GO:0098772,GO:0098813,GO:0099023,GO:0140096,GO:1901564,GO:1902115,GO:1903827,GO:1903829,GO:1905340,GO:1905342
Preferred name	TRAPPC12
Description	regulation of kinetochore assembly
COG category	L
Max annot lvl	2759\|Eukaryota
EggNOG OGs	KOG2796@1\|root,KOG2796@2759\|Eukaryota
Evalue	4.18e-23
Seed ortholog	2880.D8LLE2
Hectar predicted targeting category	other localisation
TranscriptId	349181
Track	FilteredModels1
ProteinId	348859

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348859	gene_5218	Tribonema minus UTEX_B_3156	gene	Contig_32 518627..520343 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_5218_1	exon_5218_1	Tribonema minus UTEX_B_3156	exon	Contig_32 518627..520343 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_5218	CDS_5218	Tribonema minus UTEX_B_3156	CDS	Contig_32 518627..520051 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_5218	UTR3_5218	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_32 520052..520343 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348859	Trimin1\|348859\|estExt_Genemark1.C_Ctg_320064	Tribonema minus UTEX_B_3156	polypeptide	Contig_32 518627..520051 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_32:518627..520343+
coding sequence from alignment at Contig_32:518627..520343+

spliced messenger RNA

>mRNA_5218 ID=mRNA_5218|Name=jgi.p|Trimin1|348859|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1717bp|location=Sequence derived from alignment at Contig_32:518627..520343+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCAGCCGGGAGGGGCCCATTGTCCAAGTGCGCAATCCTCCGTTCGC
AGCGGCGGCGCTGGCGAAGCGGGAGGGGGGCGCGTTGACACACCCGCACA
GTCACACAGCTTCCCCGTCGCAGCTCAAGCGACCGCTGCCGCCGCCAACC
TCTGGCAGCTCGCAGGCGTCAGGAGGCGACGGAAGCGTTGTCGCGGAGGC
AGCCATTCCTGACACCGTAGACCAGTCCCAGGTGTCTTGCCTGCTTGTGT
TCGCCGAGATGAGGGCGTGGCGCAGCGTCGCGGCGGCGGCGGAGGCGCTA
CCCGCCAGCGGCGCGCTGAGCCCCTCCGATGCCGCAGACGTGCGCATGTG
CAGAGCCACAGCGCTGCTGCGCATGCGCCATGTGGACGACGCGCAGGCAG
AGCTGCAGCGCGTGCAGCGCGCGAGTGCCGCAGCGGCAACGCCCGCGCCC
TTCGCAGCTGAGCTGCTGGCGCTCCAGATTGGTCTTTTCAAGGGCACTCT
GAGCTCCGACGATGCCATAGCATCGCTAGGCACCCTCAAGCGGGCGCTGG
ACGCTCGCATAGCCGCGGCAGCAGCGTCACCGGCGACTGAGTCGGGCTAC
ACAGCAGCAGCGGCGGCAGCGGCAGCAGCAGCAGCGCTGACTGCGCAGGA
GGCGGTGCGGTGGCGGCGGCGCGTGCGCACAACGCTGGCAAGCGCGTTTC
AGGTCATGGGCCGCTGGCGTGCCGCCCTTGCTGAACTCCAGGCCAACGAC
GACGACTTGCGAGGGGTACTCGCCAGCGGCGGCAGCAGCAGCAGCAGCGG
CGGCGGCGGCAGCGCGGCGCTACTGGCGGCCCGCGGCGAGGTGAACTCGC
GCATCGGCCGCGTCTTCCTGCAGATCGGCGACGTGCACAGCGCGACGACC
TTCTACAACCGCGCGGAGCGCATGTGGGCGGCCGCCGGCAGCAGCGGCGC
CGGCGCCGCCGACGCCGCGCTGCACCGCGCGCAGGCGCTCATCAACGCGG
GCCTGCTCGCCTTCGCGCGCAGCGACTTCCGCGGCGCCGCGGAGCGCCAC
GAGCGCGCCGCGGCGGAGGCGCGCACCGCGCGGACGCTGGCAGCCGGCGG
CGGCGGCGGCGGCGGCGGCGGCAGCGGCGCGGCGTGCGCGGGCGTCGAGG
GCGAGGGCGCCGGCGCGCTGCTGGCGGCGGCGGCGAGCAACGCGGCGCTG
GCGCACCTGTACGCGTGCGACGTCGCGCGCGCGCTGGCGGCGGCGGAGGG
TGCGGCGCGCGAGGACCCCGCTGCGGCGCTGCGCGACACGACGGCGTTCA
ACCTGTGCACGCTGTACGACCTCGGCGGCGGGCCCGCGGGCAGCGCGACG
CGCAAGGCGGCGCTCGCCGCGCTCGCGCAGCGCTTCTCGCTCGACGACGT
CGACGTCGGCTCCTTCAGGATGTGAGCGCAACGGCGGCGGCGGCAGCAGC
GGCGGCGGTGACGGCTGCGGCGGCGGCGGCGGCGGCGCGCACCGCGCATG
ATGGGTGCGGAGCGCTGGACGGGTAATTTCAGTGGTGGTGGTGTAGCGCT
GTCATCAGCTGCTCAGCTGTGGTGCGCGGCGGCGACGGCGGTTATAATGA
TGAGCGTGGTGGTGCGGGTTGTGGCATGCGTTGCGCGCCGCTTGCGCCAC
CGCACGGTGCGGTGTGTAAATAACTCCTGTAAATAGGATCAAGCGTGCCG
CGTCAGCTCGCAGGGCA

protein sequence of jgi.p|Trimin1|348859

>Trimin1|348859|estExt_Genemark1.C_Ctg_320064 ID=Trimin1|348859|estExt_Genemark1.C_Ctg_320064|Name=jgi.p|Trimin1|348859|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=475bp
MLSREGPIVQVRNPPFAAAALAKREGGALTHPHSHTASPSQLKRPLPPPT
SGSSQASGGDGSVVAEAAIPDTVDQSQVSCLLVFAEMRAWRSVAAAAEAL
PASGALSPSDAADVRMCRATALLRMRHVDDAQAELQRVQRASAAAATPAP
FAAELLALQIGLFKGTLSSDDAIASLGTLKRALDARIAAAAASPATESGY
TAAAAAAAAAAALTAQEAVRWRRRVRTTLASAFQVMGRWRAALAELQAND
DDLRGVLASGGSSSSSGGGGSAALLAARGEVNSRIGRVFLQIGDVHSATT
FYNRAERMWAAAGSSGAGAADAALHRAQALINAGLLAFARSDFRGAAERH
ERAAAEARTARTLAAGGGGGGGGGSGAACAGVEGEGAGALLAAAASNAAL
AHLYACDVARALAAAEGAAREDPAAALRDTTAFNLCTLYDLGGGPAGSAT
RKAALAALAQRFSLDDVDVGSFRM*

mRNA from alignment at Contig_32:518627..520343+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5218 ID=mRNA_5218|Name=jgi.p|Trimin1|348859|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1717bp|location=Sequence derived from alignment at Contig_32:518627..520343+ (Tribonema minus UTEX_B_3156 )
ATGCTCAGCCGGGAGGGGCCCATTGTCCAAGTGCGCAATCCTCCGTTCGC
AGCGGCGGCGCTGGCGAAGCGGGAGGGGGGCGCGTTGACACACCCGCACA
GTCACACAGCTTCCCCGTCGCAGCTCAAGCGACCGCTGCCGCCGCCAACC
TCTGGCAGCTCGCAGGCGTCAGGAGGCGACGGAAGCGTTGTCGCGGAGGC
AGCCATTCCTGACACCGTAGACCAGTCCCAGGTGTCTTGCCTGCTTGTGT
TCGCCGAGATGAGGGCGTGGCGCAGCGTCGCGGCGGCGGCGGAGGCGCTA
CCCGCCAGCGGCGCGCTGAGCCCCTCCGATGCCGCAGACGTGCGCATGTG
CAGAGCCACAGCGCTGCTGCGCATGCGCCATGTGGACGACGCGCAGGCAG
AGCTGCAGCGCGTGCAGCGCGCGAGTGCCGCAGCGGCAACGCCCGCGCCC
TTCGCAGCTGAGCTGCTGGCGCTCCAGATTGGTCTTTTCAAGGGCACTCT
GAGCTCCGACGATGCCATAGCATCGCTAGGCACCCTCAAGCGGGCGCTGG
ACGCTCGCATAGCCGCGGCAGCAGCGTCACCGGCGACTGAGTCGGGCTAC
ACAGCAGCAGCGGCGGCAGCGGCAGCAGCAGCAGCGCTGACTGCGCAGGA
GGCGGTGCGGTGGCGGCGGCGCGTGCGCACAACGCTGGCAAGCGCGTTTC
AGGTCATGGGCCGCTGGCGTGCCGCCCTTGCTGAACTCCAGGCCAACGAC
GACGACTTGCGAGGGGTACTCGCCAGCGGCGGCAGCAGCAGCAGCAGCGG
CGGCGGCGGCAGCGCGGCGCTACTGGCGGCCCGCGGCGAGGTGAACTCGC
GCATCGGCCGCGTCTTCCTGCAGATCGGCGACGTGCACAGCGCGACGACC
TTCTACAACCGCGCGGAGCGCATGTGGGCGGCCGCCGGCAGCAGCGGCGC
CGGCGCCGCCGACGCCGCGCTGCACCGCGCGCAGGCGCTCATCAACGCGG
GCCTGCTCGCCTTCGCGCGCAGCGACTTCCGCGGCGCCGCGGAGCGCCAC
GAGCGCGCCGCGGCGGAGGCGCGCACCGCGCGGACGCTGGCAGCCGGCGG
CGGCGGCGGCGGCGGCGGCGGCAGCGGCGCGGCGTGCGCGGGCGTCGAGG
GCGAGGGCGCCGGCGCGCTGCTGGCGGCGGCGGCGAGCAACGCGGCGCTG
GCGCACCTGTACGCGTGCGACGTCGCGCGCGCGCTGGCGGCGGCGGAGGG
TGCGGCGCGCGAGGACCCCGCTGCGGCGCTGCGCGACACGACGGCGTTCA
ACCTGTGCACGCTGTACGACCTCGGCGGCGGGCCCGCGGGCAGCGCGACG
CGCAAGGCGGCGCTCGCCGCGCTCGCGCAGCGCTTCTCGCTCGACGACGT
CGACGTCGGCTCCTTCAGGATGTGAGCGCAACGGCGGCGGCGGCAGCAGC
GGCGGCGGTGACGGCTGCGGCGGCGGCGGCGGCGGCGCGCACCGCGCATG
ATGGGTGCGGAGCGCTGGACGGGTAATTTCAGTGGTGGTGGTGTAGCGCT
GTCATCAGCTGCTCAGCTGTGGTGCGCGGCGGCGACGGCGGTTATAATGA
TGAGCGTGGTGGTGCGGGTTGTGGCATGCGTTGCGCGCCGCTTGCGCCAC
CGCACGGTGCGGTGTGTAAATAACTCCTGTAAATAGGATCAAGCGTGCCG
CGTCAGCTCGCAGGGCA

Coding sequence (CDS) from alignment at Contig_32:518627..520343+

>mRNA_5218 ID=mRNA_5218|Name=jgi.p|Trimin1|348859|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1425bp|location=Sequence derived from alignment at Contig_32:518627..520343+ (Tribonema minus UTEX_B_3156 )
ATGCTCAGCCGGGAGGGGCCCATTGTCCAAGTGCGCAATCCTCCGTTCGC
AGCGGCGGCGCTGGCGAAGCGGGAGGGGGGCGCGTTGACACACCCGCACA
GTCACACAGCTTCCCCGTCGCAGCTCAAGCGACCGCTGCCGCCGCCAACC
TCTGGCAGCTCGCAGGCGTCAGGAGGCGACGGAAGCGTTGTCGCGGAGGC
AGCCATTCCTGACACCGTAGACCAGTCCCAGGTGTCTTGCCTGCTTGTGT
TCGCCGAGATGAGGGCGTGGCGCAGCGTCGCGGCGGCGGCGGAGGCGCTA
CCCGCCAGCGGCGCGCTGAGCCCCTCCGATGCCGCAGACGTGCGCATGTG
CAGAGCCACAGCGCTGCTGCGCATGCGCCATGTGGACGACGCGCAGGCAG
AGCTGCAGCGCGTGCAGCGCGCGAGTGCCGCAGCGGCAACGCCCGCGCCC
TTCGCAGCTGAGCTGCTGGCGCTCCAGATTGGTCTTTTCAAGGGCACTCT
GAGCTCCGACGATGCCATAGCATCGCTAGGCACCCTCAAGCGGGCGCTGG
ACGCTCGCATAGCCGCGGCAGCAGCGTCACCGGCGACTGAGTCGGGCTAC
ACAGCAGCAGCGGCGGCAGCGGCAGCAGCAGCAGCGCTGACTGCGCAGGA
GGCGGTGCGGTGGCGGCGGCGCGTGCGCACAACGCTGGCAAGCGCGTTTC
AGGTCATGGGCCGCTGGCGTGCCGCCCTTGCTGAACTCCAGGCCAACGAC
GACGACTTGCGAGGGGTACTCGCCAGCGGCGGCAGCAGCAGCAGCAGCGG
CGGCGGCGGCAGCGCGGCGCTACTGGCGGCCCGCGGCGAGGTGAACTCGC
GCATCGGCCGCGTCTTCCTGCAGATCGGCGACGTGCACAGCGCGACGACC
TTCTACAACCGCGCGGAGCGCATGTGGGCGGCCGCCGGCAGCAGCGGCGC
CGGCGCCGCCGACGCCGCGCTGCACCGCGCGCAGGCGCTCATCAACGCGG
GCCTGCTCGCCTTCGCGCGCAGCGACTTCCGCGGCGCCGCGGAGCGCCAC
GAGCGCGCCGCGGCGGAGGCGCGCACCGCGCGGACGCTGGCAGCCGGCGG
CGGCGGCGGCGGCGGCGGCGGCAGCGGCGCGGCGTGCGCGGGCGTCGAGG
GCGAGGGCGCCGGCGCGCTGCTGGCGGCGGCGGCGAGCAACGCGGCGCTG
GCGCACCTGTACGCGTGCGACGTCGCGCGCGCGCTGGCGGCGGCGGAGGG
TGCGGCGCGCGAGGACCCCGCTGCGGCGCTGCGCGACACGACGGCGTTCA
ACCTGTGCACGCTGTACGACCTCGGCGGCGGGCCCGCGGGCAGCGCGACG
CGCAAGGCGGCGCTCGCCGCGCTCGCGCAGCGCTTCTCGCTCGACGACGT
CGACGTCGGCTCCTTCAGGATGTGA