mRNA_5138 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|174748
Unique NamemRNA_5138
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|174748 vs. uniprot
Match: A0A835Z7L8_9STRA (Proliferating cell nuclear antigen n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7L8_9STRA)

HSP 1 Score: 486 bits (1252), Expect = 1.860e-172
Identity = 245/253 (96.84%), Postives = 252/253 (99.60%), Query Frame = 1 
Query:    1 QWRLLVDFLKDLITECPITFNQDGMKLISLDPVKVALLHLQAKSEFYYCKSEFTVGMNITALYKMLRNLTTGGFMLEFSMSSKEMDVLSIQLINSDKRTCTSNKLKLLKLPQETLIIPSTNFQRVLSIPSADLQRHVRELAALSNKIKIRSTADQLILSAEGTMGSSEIVIRPTASGMHWISIDNNQDSDGGGDAVVEGVYFSKFLERFSRPLDPICEIFVKQNYPLVLRYVLSTATVRLVIAPVQEDEGIDN 759
            QWRLLVDFLKDLITECPI+FNQDGMKLISLDP+KVALLHLQAKSEFYYCKSE T+GMNITALYKMLRNLTTGG+MLEFSMSSKEMDVLSIQLINSDKRTCTSNKLKLLKLPQETLIIPSTNFQRVLSIPSADLQRHVRELAALSNKIKI+STADQLILSAEGTMGSSEIVIRPTASGMHWISIDNNQ+S+GGGDAVVEGVYFSKFLERFSRPLDPICEIFVKQNYPLVLRYVLSTATVRLVIAPVQEDEGIDN
Sbjct:   48 QWRLLVDFLKDLITECPISFNQDGMKLISLDPIKVALLHLQAKSEFYYCKSEITIGMNITALYKMLRNLTTGGYMLEFSMSSKEMDVLSIQLINSDKRTCTSNKLKLLKLPQETLIIPSTNFQRVLSIPSADLQRHVRELAALSNKIKIKSTADQLILSAEGTMGSSEIVIRPTASGMHWISIDNNQESEGGGDAVVEGVYFSKFLERFSRPLDPICEIFVKQNYPLVLRYVLSTATVRLVIAPVQEDEGIDN 300
[Close]
BLAST of jgi.p|Trimin1|174748 vs. uniprot
Match: A0A836CHQ2_9STRA (Proliferating cell nuclear antigen n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHQ2_9STRA)

HSP 1 Score: 485 bits (1248), Expect = 7.060e-172
Identity = 245/253 (96.84%), Postives = 252/253 (99.60%), Query Frame = 1 
Query:    1 QWRLLVDFLKDLITECPITFNQDGMKLISLDPVKVALLHLQAKSEFYYCKSEFTVGMNITALYKMLRNLTTGGFMLEFSMSSKEMDVLSIQLINSDKRTCTSNKLKLLKLPQETLIIPSTNFQRVLSIPSADLQRHVRELAALSNKIKIRSTADQLILSAEGTMGSSEIVIRPTASGMHWISIDNNQDSDGGGDAVVEGVYFSKFLERFSRPLDPICEIFVKQNYPLVLRYVLSTATVRLVIAPVQEDEGIDN 759
            QWRLLVDFLKDLITECPI+F+QDGMKLISLDP+KVALLHLQAKSEFYYCKSE TVGMNITALYKMLRNLTTGG+MLEFSMSSKEMDVLSIQLINSDKRTCTSNKLKLLKLPQETLIIPSTNFQRVLSIPSADLQRHVRELAALSNKIKI+STADQLILSAEGTMGSSEIVIRPTASGMHWISIDNNQ+S+GGGDAVVEGVYFSKFLERFSRPLDPICEIFVKQNYPLVLRYVLSTATVRLVIAPVQEDEGIDN
Sbjct:   46 QWRLLVDFLKDLITECPISFSQDGMKLISLDPIKVALLHLQAKSEFYYCKSEITVGMNITALYKMLRNLTTGGYMLEFSMSSKEMDVLSIQLINSDKRTCTSNKLKLLKLPQETLIIPSTNFQRVLSIPSADLQRHVRELAALSNKIKIKSTADQLILSAEGTMGSSEIVIRPTASGMHWISIDNNQESEGGGDAVVEGVYFSKFLERFSRPLDPICEIFVKQNYPLVLRYVLSTATVRLVIAPVQEDEGIDN 298
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BLAST of jgi.p|Trimin1|174748 vs. uniprot
Match: A0A835Z117_9STRA (Proliferating cell nuclear antigen n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z117_9STRA)

HSP 1 Score: 311 bits (798), Expect = 2.990e-103
Identity = 156/250 (62.40%), Postives = 194/250 (77.60%), Query Frame = 1 
Query:    1 QWRLLVDFLKDLITECPITFNQDGMKLISLDPVKVALLHLQAKSEFYYCKSEFTVGMNITALYKMLRNLTTGGFMLEFSMSSKEMDVLSIQLINSDKRTCTSNKLKLLKLPQETLIIPSTNFQRVLSIPSADLQRHVRELAALSNKIKIRSTADQLILSAEGTMGSSEIVIRPTASGMHWISIDNNQDSDGGGDAVVEGVYFSKFLERFSRPLDPICEIFVKQNYPLVLRYVLSTATVRLVIAPVQEDEG 750
            QWR L+D LKDLI E P+TF   GMKLIS+DP  VAL++LQ  SEFYYCK E TVG+N+ ALY+MLRNLTTGG++LE ++   + D LSI + N +KRT TSN+LKLL+LP+E + IP T FQRVLSIPSAD QR++REL+ +SNKI IRST D L+LSA GTMG++EI +RPTASGMHW  I++    +   +  VEGVY +K+LERFSRPLDP+ EIF++  YPLVLRY +STA VRLVIA    +EG
Sbjct:   59 QWRTLIDALKDLIPESPVTFGASGMKLISMDPAHVALINLQVCSEFYYCKRETTVGLNVAALYRMLRNLTTGGYLLEINLLESDPDHLSILVNNEEKRTRTSNRLKLLRLPEEIITIPPTVFQRVLSIPSADFQRYIRELSGVSNKISIRSTKDMLLLSASGTMGTTEIEVRPTASGMHWQHIESAASDEE--EEAVEGVYLAKYLERFSRPLDPVVEIFMRPAYPLVLRYSMSTAVVRLVIAQCAREEG 306
[Close]
BLAST of jgi.p|Trimin1|174748 vs. uniprot
Match: A0A835YX88_9STRA (Proliferating cell nuclear antigen n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX88_9STRA)

HSP 1 Score: 310 bits (794), Expect = 2.500e-102
Identity = 157/250 (62.80%), Postives = 192/250 (76.80%), Query Frame = 1 
Query:    1 QWRLLVDFLKDLITECPITFNQDGMKLISLDPVKVALLHLQAKSEFYYCKSEFTVGMNITALYKMLRNLTTGGFMLEFSMSSKEMDVLSIQLINSDKRTCTSNKLKLLKLPQETLIIPSTNFQRVLSIPSADLQRHVRELAALSNKIKIRSTADQLILSAEGTMGSSEIVIRPTASGMHWISIDNNQDSDGGGDAVVEGVYFSKFLERFSRPLDPICEIFVKQNYPLVLRYVLSTATVRLVIAPVQEDEG 750
            QWR L D LKDLI+E P+TF   GMKL+S+DP  VAL++LQ +SE YYCK E TVG+N+ ALYKMLRNLTTGG++LE S+S  + D L + + N DKRT TSN+ KLL+LP E + IP   FQRVLSIPSAD QR++REL+ +SNKIKIRST D L+LSAEGT GS+EI IRPTASGMHW  ID+        D VVEGV++S+++ERF+RPLD + EIF+KQ YPLVLRY L  ATVRLVIA   +D+ 
Sbjct:   77 QWRTLTDALKDLISESPVTFGPAGMKLVSMDPAHVALVNLQIQSEHYYCKREITVGLNVAALYKMLRNLTTGGYILELSLSEDDPDHLRVLISNEDKRTRTSNRPKLLRLPDEIITIPPAVFQRVLSIPSADFQRYIRELSGVSNKIKIRSTRDVLVLSAEGTSGSTEIEIRPTASGMHWQFIDSEAT-----DEVVEGVFYSRYVERFARPLDSVVEIFIKQAYPLVLRYQLQAATVRLVIAQCTDDDA 321
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BLAST of jgi.p|Trimin1|174748 vs. uniprot
Match: A0A835Z2Q5_9STRA (Proliferating cell nuclear antigen n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Q5_9STRA)

HSP 1 Score: 281 bits (719), Expect = 1.100e-91
Identity = 131/249 (52.61%), Postives = 190/249 (76.31%), Query Frame = 1 
Query:    1 QWRLLVDFLKDLITECPITFNQDGMKLISLDPVKVALLHLQAKSEFYYCKSEFTVGMNITALYKMLRNLTTGGFMLEFSMSSKEMDVLSIQLINSDKRTCTSNKLKLLKLPQETLIIPSTNFQRVLSIPSADLQRHVRELAALSNKIKIRSTADQLILSAEGTMGSSEIVIRPTASGMHWISIDNNQDSDGGGDAVVEGVYFSKFLERFSRPLDPICEIFVKQNYPLVLRYVLSTATVRLVIAPVQEDE 747
            QWR + DF+KD+ TE P  F+ +G+ +I+LDP+K+AL+ ++A +EFYYCK+   VG+N+T LY++LRNLT+ G++LE SM   E DV+ +Q+ N DKR+   NK+KLL+LP E + IPST F RVLSIPS+DLQR++REL++LS+KI + ST D+L LSA+G +GSSEI +RPT+SG+H++  D  +      D VV   ++S++LE+  RP+D   E+F+K+ YPLVLRY L+TAT+R+VIAPV +D+
Sbjct:   36 QWRSIFDFVKDVTTEVPFKFDTEGLSIITLDPLKIALISVRAVTEFYYCKAPLNVGINVTVLYRLLRNLTSAGYVLEISMFQNETDVIHVQITNRDKRSVVRNKIKLLRLPDEVITIPSTTFDRVLSIPSSDLQRYIRELSSLSSKITVSSTRDELTLSAQGALGSSEITVRPTSSGVHFLFKDTEKH-----DEVVSARFYSRYLEKLCRPIDSSTEVFLKKGYPLVLRYNLATATIRVVIAPVNDDD 279
[Close]
BLAST of jgi.p|Trimin1|174748 vs. uniprot
Match: A0A836CPH7_9STRA (PCNA_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPH7_9STRA)

HSP 1 Score: 244 bits (623), Expect = 2.300e-75
Identity = 130/271 (47.97%), Postives = 173/271 (63.84%), Query Frame = 1 
Query:    1 QWRLLVDFLKDLITECPITFNQDGMKLISLDPVKVALLHLQAKSEFYYCKSEFTVGMNITALYKMLRNLTTGGFMLEFSMSSKEMDVLSIQLINSDKRTCTSNKLKLLKLPQETLIIPSTNFQRVLSIPSADLQRHVRELAALSNKIKIRSTADQLILSAEGTMGSSEIVIRPTASGMHWISIDNNQDSDGGG-----------------------DAVVEGVYFSKFLERFSRPLDPICEIFVKQNYPLVLRYVLSTATVRLVIAPVQED 744
            QWR L D LKDL+ ECP+TF  DG+KL+S+DP  +AL+                VG+N+ ALY+MLRNLTTGG++LE S+     D +S+ + N +KR  T + LKLL+LP+E + IP   FQRVLSIPSAD QR+VREL+ +SN+I++RS+ D+L LSA G  G +EI IRPTASGMHW  I+                                D  ++GV+ SK+LERFSRPLD I EIF+K++YPLVLRY + T  VRLV+A  +++
Sbjct:  136 QWRTLADALKDLVPECPVTFGADGLKLVSMDPGMIALI------------CWLMVGLNVAALYRMLRNLTTGGYILELSIHESTPDRMSVVVSNGEKRVRTCHSLKLLRLPEEIITIPPAVFQRVLSIPSADFQRYVRELSGVSNRIRVRSSRDRLTLSATGVAGLTEIEIRPTASGMHWQFIEPXXXXXXXXXADDAPEXXXXXXXGASPPAAVEDPGIDGVFLSKYLERFSRPLDSIVEIFLKRDYPLVLRYTMQTTVVRLVVAQCEDE 394
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BLAST of jgi.p|Trimin1|174748 vs. uniprot
Match: D8LPF8_ECTSI (Proliferating cell nuclear antigen n=2 Tax=root TaxID=1 RepID=D8LPF8_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 2.180e-54
Identity = 100/253 (39.53%), Postives = 161/253 (63.64%), Query Frame = 1 
Query:    1 QWRLLVDFLKDLITECPITFNQD-GMKLISLDPVKVALLHLQAKS-EFYYCKSEFTVGMNITALYKMLRNLTTGGFMLEFSMSSKEMDVLSIQLINSDKRTCTSNKLKLLKLPQETLIIPSTNFQRVLSIPSADLQRHVRELAALSNKIKIRSTADQLILSAEGTMGSSEIVIRPTASGMHWISIDNNQDSDGGGDAVVEGVYFSKFLERFSRPLDPI-CEIFVKQNYPLVLRYVLSTATVRLVIAPVQEDEG 750
            Q++ L++ LK+L+ E  + F +  G++L+S+DP +VA++HL   + E +Y K   T G+N+  LYKM+R++T+  FM E+ +   E   + I+L NS++RT T   +KLL L  E +IIP   F RV+S+PS++L +HVRE+  +S  I IR+T   L L +EG M  S I I PTASG++W   +  +D        +EG YF++++E+F++    I  E+F+K NYPL+LR+ +S   +R  IAP+Q+ + 
Sbjct:   38 QFKSLIECLKELLCEVNMDFIEGKGIRLVSIDPGRVAMIHLVVNNIESFYAKGTVTAGLNVVVLYKMIRSMTSNDFM-EWRIYEDEPHRMEIELSNSERRTKTVTSIKLLDLDAEDIIIPQVEFDRVVSMPSSELSKHVREMVTVSPFISIRATQTTLELVSEGEMAKSHITIEPTASGLNWKHSEKGED--------IEGKYFARYIEKFTKNSLAINVELFLKANYPLILRFEISIGCLRFCIAPIQDGQS 281
[Close]
BLAST of jgi.p|Trimin1|174748 vs. uniprot
Match: B5LWG9_9PHYC (Putative PCNA n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWG9_9PHYC)

HSP 1 Score: 186 bits (471), Expect = 3.550e-54
Identity = 102/250 (40.80%), Postives = 167/250 (66.80%), Query Frame = 1 
Query:    1 QWRLLVDFLKDLITECPITFNQD-GMKLISLDPVKVALLHLQAKS-EFYYCKSEFTVGMNITALYKMLRNLTTGGFMLEFSMSSKEMDVLSIQLINSDKRTCTSNKLKLLKLPQETLIIPSTNFQRVLSIPSADLQRHVRELAALSNKIKIRSTADQLILSAEGTMGSSEIVIRPTASGMHWISIDNNQDSDGGGDAVVEGVYFSKFLERFSRP-LDPICEIFVKQNYPLVLRYVLSTATVRLVIAPVQE 741
            Q++ L + LK+L+T+  + F ++ G++L+S+DP +VA++HL   S E++Y K   T GMN+  LY+M+R+L++G +M E+ +       ++I+L NSD+RT T + +KLL L +  + IP+  + RV+S+PS++L +HVRE+ A+SN + +R T   L   AEG M SS I I PTASG++W      + S+  GD  +EG +  ++LE+F R  ++   E+F+K ++PL+LRY LS  T+R VIAPV++
Sbjct:   46 QFKSLCECLKELLTDVNMEFIENKGIRLVSIDPGRVAMVHLVVNSVEYFYVKGTVTAGMNMAFLYRMIRSLSSGDYM-EWRIYEDNPHAMNIELYNSDRRTRTVSSMKLLDLDEVEISIPNVEYDRVVSMPSSELSKHVREMVAVSNFVTVRGTRSTLEFIAEGEMASSHITIHPTASGLNW------KFSEDVGD--IEGKFVVRYLEKFGRVGVEANVELFLKTDFPLILRYELSIGTLRFVIAPVKD 286
[Close]
BLAST of jgi.p|Trimin1|174748 vs. uniprot
Match: Q6XM81_9PHYC (FirrV-1-A6 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM81_9PHYC)

HSP 1 Score: 182 bits (462), Expect = 4.740e-53
Identity = 100/250 (40.00%), Postives = 165/250 (66.00%), Query Frame = 1 
Query:    1 QWRLLVDFLKDLITECPITFNQD-GMKLISLDPVKVALLHLQAKS-EFYYCKSEFTVGMNITALYKMLRNLTTGGFMLEFSMSSKEMDVLSIQLINSDKRTCTSNKLKLLKLPQETLIIPSTNFQRVLSIPSADLQRHVRELAALSNKIKIRSTADQLILSAEGTMGSSEIVIRPTASGMHWISIDNNQDSDGGGDAVVEGVYFSKFLERFSRP-LDPICEIFVKQNYPLVLRYVLSTATVRLVIAPVQE 741
            Q++ L + LK+L+T+  + F QD G++L+S+DP +VA++HL   S E++Y +   T G+N++ LY+M+R LT+G  M E+ +   +   + I+L N+D+RT T + +KLL L +  + IP   + R++S+PS++L +HVRE+ A+SN + +R+T   L   AEG M +S I I PTASG++W   D   D  G     +EG +  ++LE+F R  ++   E+F+K+N+PL+LRY L+  T+R VIAPV++
Sbjct:   26 QFKNLCECLKELLTDVNLEFIQDKGIRLVSIDPGRVAMVHLVINSVEYFYAQGTVTAGLNMSFLYRMIRCLTSGDSM-EWRVFEDDPHTMHIELYNNDRRTRTVSSIKLLDLDEVDISIPEVEYDRIVSMPSSELSKHVREMIAVSNYVTVRTTKTTLQFIAEGDMATSHITIHPTASGLNWKYSD---DVVG----TIEGKFVVRYLEKFGRVGVEANVELFLKKNFPLILRYELTIGTLRFVIAPVKD 267
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BLAST of jgi.p|Trimin1|174748 vs. uniprot
Match: A0A381U3D5_9ZZZZ (Uncharacterized protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381U3D5_9ZZZZ)

HSP 1 Score: 148 bits (373), Expect = 7.740e-40
Identity = 78/256 (30.47%), Postives = 153/256 (59.77%), Query Frame = 1 
Query:    4 WRLLVDFLKDLITECPITFNQDGMKLISLDPVKVALLHLQAKS---EFYYCKSEFTVGMNITALYKMLRNLTTGGFMLEFSMSSKEMDVLSIQLINSDKRTCTSNKLKLLKLPQETLIIPSTNFQRVLSIPSADLQRHVRELAALSNKIKIRSTADQLILSAEGTMGSSEIVIRPTASGMHWISIDNNQDSDGGGDAVVEGVYFSKFLERFSRPLDPIC---EIFVKQNYPLVLRYVL-STATVRLVIAPVQEDEG 750
            +R+L++ LK+++T+  + F++ GMK++ +D     L+HL+ +S   EFYYCK    +G+N+  L+K++R +      L   + S    VL I++ N +K + T+ KL L+++ +E +++P T F  V+++PS D Q+ V+++  LS++I+I+S  ++L+ S  G   + E +I  T  G+ +   +  +        +V+GV+ +K L  F +  + +C   E+++K +YPL++RY   S  +++L +AP  E+ G
Sbjct:   15 FRILIEALKEILTDANMEFDETGMKIMKMDSTHTVLVHLRLQSDDFEFYYCKQPIVLGVNMINLFKLIRTIGNDDT-LNLYVDSGNQGVLGIKIENGEKNSVTNYKLNLMEIDEENIVVPPTTFDSVITLPSVDFQKIVKDMNNLSSEIEIKSYGNKLMFSCVGDFATQETIIGETMDGISFTKANPEE--------IVQGVFSTKHLISFCKCTN-LCNSIEMYLKNDYPLIIRYTCASLGSIKLCLAPKYEESG 260
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174748 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z7L8_9STRA1.860e-17296.84Proliferating cell nuclear antigen n=2 Tax=Tribone... [more]
A0A836CHQ2_9STRA7.060e-17296.84Proliferating cell nuclear antigen n=1 Tax=Tribone... [more]
A0A835Z117_9STRA2.990e-10362.40Proliferating cell nuclear antigen n=3 Tax=Tribone... [more]
A0A835YX88_9STRA2.500e-10262.80Proliferating cell nuclear antigen n=1 Tax=Tribone... [more]
A0A835Z2Q5_9STRA1.100e-9152.61Proliferating cell nuclear antigen n=1 Tax=Tribone... [more]
A0A836CPH7_9STRA2.300e-7547.97PCNA_C domain-containing protein n=1 Tax=Tribonema... [more]
D8LPF8_ECTSI2.180e-5439.53Proliferating cell nuclear antigen n=2 Tax=root Ta... [more]
B5LWG9_9PHYC3.550e-5440.80Putative PCNA n=1 Tax=Feldmannia species virus Tax... [more]
Q6XM81_9PHYC4.740e-5340.00FirrV-1-A6 n=1 Tax=Feldmannia irregularis virus a ... [more]
A0A381U3D5_9ZZZZ7.740e-4030.47Uncharacterized protein n=1 Tax=marine metagenome ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_117contigContig_117:431066..431952 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|174748|e_gw1.117.133.1
DescriptionProliferating cell nuclear antigen, C-terminal domain
COG categoryL
Max annot lvl10239|Viruses
EggNOG OGs4QCG1@10239|Viruses,4QXUJ@35237|dsDNA viruses no RNA stage
Evalue2.23e-55
Seed ortholog654926.Q8QNE7_ESV1K
Hectar predicted targeting categoryother localisation
TranscriptId175070
TrackFilteredModels1
ProteinId174748
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174748gene_5138Tribonema minus UTEX_B_3156 geneContig_117 431066..431952 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5138_1exon_5138_1Tribonema minus UTEX_B_3156 exonContig_117 431066..431473 +
exon_5138_2exon_5138_2Tribonema minus UTEX_B_3156 exonContig_117 431554..431952 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5138CDS_5138Tribonema minus UTEX_B_3156 CDSContig_117 431066..431473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174748Trimin1|174748|e_gw1.117.133.1Tribonema minus UTEX_B_3156 polypeptideContig_117 431066..431952 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5138 ID=mRNA_5138|Name=jgi.p|Trimin1|174748|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=807bp|location=Sequence derived from alignment at Contig_117:431066..431952+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGTGGAGGCTGCTGGTCGATTTTCTCAAGGACCTCATCACGGAGTGCCC
CATCACATTCAACCAAGACGGCATGAAGCTGATCAGCCTGGACCCCGTCA
AGGTCGCATTGCTGCACCTCCAGGCCAAGTCGGAGTTCTACTACTGCAAG
TCTGAATTTACGGTCGGGATGAACATCACGGCCCTCTACAAGATGCTGCG
CAACCTGACCACAGGAGGATTCATGTTAGAGTTCAGCATGTCAAGCAAGG
AGATGGACGTTCTCTCCATCCAGCTGATCAACTCTGACAAGCGCACGTGC
ACTTCCAACAAGCTGAAGCTGCTCAAGCTGCCACAGGAGACTCTGATCAT
ACCCTCCACGAATTTCCAGCGCGTCCTCTCCATCCCCAGCGCGGACCTGC
AACGCCATGTACGCGAACTGGCTGCTCTGTCCAACAAGATCAAGATCAGG
AGCACTGCCGACCAGCTCATTTTGTCTGCCGAAGGCACGATGGGAAGCTC
GGAGATCGTGATCCGCCCTACCGCTTCCGGAATGCACTGGATAAGCATCG
ACAACAACCAGGACAGCGACGGCGGAGGAGATGCGGTCGTGGAGGGAGTT
TATTTCTCAAAGTTTCTGGAGCGCTTTTCGCGCCCGCTGGATCCCATCTG
CGAGATATTCGTCAAGCAGAATTATCCGCTTGTCCTCCGTTACGTGCTGA
GTACGGCGACAGTGCGCCTGGTGATCGCCCCCGTGCAGGAAGATGAAGGC
ATAGACAATTTATTTCTACATGTATCTACCTATACTTCCTCGCTGTGCTC
GCATTGA
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protein sequence of jgi.p|Trimin1|174748

>Trimin1|174748|e_gw1.117.133.1 ID=Trimin1|174748|e_gw1.117.133.1|Name=jgi.p|Trimin1|174748|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=269bp
QWRLLVDFLKDLITECPITFNQDGMKLISLDPVKVALLHLQAKSEFYYCK
SEFTVGMNITALYKMLRNLTTGGFMLEFSMSSKEMDVLSIQLINSDKRTC
TSNKLKLLKLPQETLIIPSTNFQRVLSIPSADLQRHVRELAALSNKIKIR
STADQLILSAEGTMGSSEIVIRPTASGMHWISIDNNQDSDGGGDAVVEGV
YFSKFLERFSRPLDPICEIFVKQNYPLVLRYVLSTATVRLVIAPVQEDEG
IDNLFLHVSTYTSSLCSH*
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mRNA from alignment at Contig_117:431066..431952+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5138 ID=mRNA_5138|Name=jgi.p|Trimin1|174748|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=887bp|location=Sequence derived from alignment at Contig_117:431066..431952+ (Tribonema minus UTEX_B_3156 )
CAGTGGAGGCTGCTGGTCGATTTTCTCAAGGACCTCATCACGGAGTGCCC
CATCACATTCAACCAAGACGGCATGAAGCTGATCAGCCTGGACCCCGTCA
AGGTCGCATTGCTGCACCTCCAGGCCAAGTCGGAGTTCTACTACTGCAAG
TCTGAATTTACGGTCGGGATGAACATCACGGCCCTCTACAAGATGCTGCG
CAACCTGACCACAGGAGGATTCATGTTAGAGTTCAGCATGTCAAGCAAGG
AGATGGACGTTCTCTCCATCCAGCTGATCAACTCTGACAAGCGCACGTGC
ACTTCCAACAAGCTGAAGCTGCTCAAGCTGCCACAGGAGACTCTGATCAT
ACCCTCCACGAATTTCCAGCGCGTCCTCTCCATCCCCAGCGCGGACCTGC
AACGCCATGTGAGTAACAGTAATGTGTGAAATGTATGTAACATCGGAAAC
ATGTGCTGACACCCCACCCCTCTCCTTGCAATGCACAGGTACGCGAACTG
GCTGCTCTGTCCAACAAGATCAAGATCAGGAGCACTGCCGACCAGCTCAT
TTTGTCTGCCGAAGGCACGATGGGAAGCTCGGAGATCGTGATCCGCCCTA
CCGCTTCCGGAATGCACTGGATAAGCATCGACAACAACCAGGACAGCGAC
GGCGGAGGAGATGCGGTCGTGGAGGGAGTTTATTTCTCAAAGTTTCTGGA
GCGCTTTTCGCGCCCGCTGGATCCCATCTGCGAGATATTCGTCAAGCAGA
ATTATCCGCTTGTCCTCCGTTACGTGCTGAGTACGGCGACAGTGCGCCTG
GTGATCGCCCCCGTGCAGGAAGATGAAGGCATAGACAATTTATTTCTACA
TGTATCTACCTATACTTCCTCGCTGTGCTCGCATTGA
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Coding sequence (CDS) from alignment at Contig_117:431066..431952+

>mRNA_5138 ID=mRNA_5138|Name=jgi.p|Trimin1|174748|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=807bp|location=Sequence derived from alignment at Contig_117:431066..431952+ (Tribonema minus UTEX_B_3156 )
CAGTGGAGGCTGCTGGTCGATTTTCTCAAGGACCTCATCACGGAGTGCCC
CATCACATTCAACCAAGACGGCATGAAGCTGATCAGCCTGGACCCCGTCA
AGGTCGCATTGCTGCACCTCCAGGCCAAGTCGGAGTTCTACTACTGCAAG
TCTGAATTTACGGTCGGGATGAACATCACGGCCCTCTACAAGATGCTGCG
CAACCTGACCACAGGAGGATTCATGTTAGAGTTCAGCATGTCAAGCAAGG
AGATGGACGTTCTCTCCATCCAGCTGATCAACTCTGACAAGCGCACGTGC
ACTTCCAACAAGCTGAAGCTGCTCAAGCTGCCACAGGAGACTCTGATCAT
ACCCTCCACGAATTTCCAGCGCGTCCTCTCCATCCCCAGCGCGGACCTGC
AACGCCATGTACGCGAACTGGCTGCTCTGTCCAACAAGATCAAGATCAGG
AGCACTGCCGACCAGCTCATTTTGTCTGCCGAAGGCACGATGGGAAGCTC
GGAGATCGTGATCCGCCCTACCGCTTCCGGAATGCACTGGATAAGCATCG
ACAACAACCAGGACAGCGACGGCGGAGGAGATGCGGTCGTGGAGGGAGTT
TATTTCTCAAAGTTTCTGGAGCGCTTTTCGCGCCCGCTGGATCCCATCTG
CGAGATATTCGTCAAGCAGAATTATCCGCTTGTCCTCCGTTACGTGCTGA
GTACGGCGACAGTGCGCCTGGTGATCGCCCCCGTGCAGGAAGATGAAGGC
ATAGACAATTTATTTCTACATGTATCTACCTATACTTCCTCGCTGTGCTC
GCATTGA
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