mRNA_5126 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|174780
Unique NamemRNA_5126
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|174780 vs. uniprot
Match: A0A836CN45_9STRA (GIY-YIG domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN45_9STRA)

HSP 1 Score: 360 bits (925), Expect = 2.880e-126
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 1 
Query:    1 MSHYCYALCNDSGRTYIGYTVCPSRRLRQHNSSIKGGAKATRGRGPWRFIYVVEYINFTASEALSLEWHIKHPSKGIGRRGAQARTEALKCAFLRSKFTSKSADCRVHLTTEFARLQSHLPDVDVLLTDAISIAKPDGRVQLEASPTCSPTCCSTLKVPYMLLHPKGYNLKSE 519
            MSHYCYALCNDSGRTYIGYTVCPSRRLRQHNSSIKGGAKATRGRGPWRFIYVVEYINFTASEALSLEWHIKHPSKGIGRRGAQARTEALKCAFLRSKFTSKSADCRVHLTTEFARLQSHLPDVDVLLTDAISIAKPDGRVQLEASPTCSPTCCSTLKVPYMLLHPKGYNLKSE
Sbjct:    1 MSHYCYALCNDSGRTYIGYTVCPSRRLRQHNSSIKGGAKATRGRGPWRFIYVVEYINFTASEALSLEWHIKHPSKGIGRRGAQARTEALKCAFLRSKFTSKSADCRVHLTTEFARLQSHLPDVDVLLTDAISIAKPDGRVQLEASPTCSPTCCSTLKVPYMLLHPKGYNLKSE 173
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BLAST of jgi.p|Trimin1|174780 vs. uniprot
Match: A0A836CJ24_9STRA (GIY-YIG domain-containing protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ24_9STRA)

HSP 1 Score: 145 bits (366), Expect = 1.610e-42
Identity = 62/73 (84.93%), Postives = 71/73 (97.26%), Query Frame = 1 
Query:    1 MSHYCYALCNDSGRTYIGYTVCPSRRLRQHNSSIKGGAKATRGRGPWRFIYVVEYINFTASEALSLEWHIKHP 219
            MSHYCYALCN+SGRTY+GYTVCP+RR+RQHNS IKGGAKATRGRGPWRFIYVV+ I+++AS+ALSLEWHIKHP
Sbjct:    1 MSHYCYALCNESGRTYVGYTVCPARRIRQHNSDIKGGAKATRGRGPWRFIYVVDCIDYSASDALSLEWHIKHP 73
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BLAST of jgi.p|Trimin1|174780 vs. uniprot
Match: A0A836CIF4_9STRA (GIY-YIG domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIF4_9STRA)

HSP 1 Score: 106 bits (265), Expect = 3.220e-26
Identity = 48/100 (48.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:    1 MSHYCYALCNDSGRTYIGYTVCPSRRLRQHNSSIKGGAKATRGRGPWRFIYVVEYINFTASEALSLEWHIKHPS--KGIGRRGAQARTEALKCAFLRSKF 294
            M+H+CY + N+ GRTY+GYTV P RRLRQHN  I GGA++T G+GPWRF +V+   +F + + LS EWH+K P+  +   R G Q R + L       KF
Sbjct:    1 MTHFCYTIVNEQGRTYVGYTVLPKRRLRQHNGVITGGARSTAGKGPWRFAFVLTSESFDSHKGLSCEWHLKRPNGRRSRCRPGVQGRIDLLSKVVCHHKF 100
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BLAST of jgi.p|Trimin1|174780 vs. uniprot
Match: A0A835ZCR8_9STRA (GIY-YIG domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCR8_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.300e-23
Identity = 40/69 (57.97%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:   13 CYALCNDSGRTYIGYTVCPSRRLRQHNSSIKGGAKATRGRGPWRFIYVVEYINFTASEALSLEWHIKHP 219
            CY + N+ GRTY+GYTV P RRLRQHN  +KGGA+ T G+GPWR++ V+    F   +ALS EWH+KHP
Sbjct:    2 CYVIVNEQGRTYVGYTVNPKRRLRQHNGCLKGGARNTAGKGPWRYVIVLTSEAFDNRKALSAEWHLKHP 70
[Close]
BLAST of jgi.p|Trimin1|174780 vs. uniprot
Match: A0A6C0CV58_9ZZZZ (GIY-YIG domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CV58_9ZZZZ)

HSP 1 Score: 82.4 bits (202), Expect = 6.600e-17
Identity = 39/76 (51.32%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:    1 MSHYCYALCNDSGRTYIGYTVCPSRRLRQHNSSIKGGAKATRGRGPWRFIYVVEYINFTA-SEALSLEWHIKHPSK 225
            M +YCY + N + RTY GYTV  +RRL+QHN  I+GGAKATRGRGPW F+ ++    +   S A+  EW IK+P++
Sbjct:    1 MVYYCYVIGNANDRTYNGYTVNLTRRLKQHNGVIQGGAKATRGRGPWEFVLILTSECWDCISVAMQHEWSIKYPTR 76
[Close]
BLAST of jgi.p|Trimin1|174780 vs. uniprot
Match: A0A6C0F1Y7_9ZZZZ (GIY-YIG domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0F1Y7_9ZZZZ)

HSP 1 Score: 80.9 bits (198), Expect = 4.920e-16
Identity = 43/97 (44.33%), Postives = 59/97 (60.82%), Query Frame = 1 
Query:    7 HYCYALCNDS------GRTYIGYTVCPSRRLRQHNSSIKGGAKATRGRGPWRFIYVVEYINFTASEALSLEWHIKHPSKGIGR----RGAQARTEAL 267
            +YCY L          GRTY GYTV  + RLRQHN  IKGGA AT+ +GPW FI V+  +++T+  A+ +EW I++P++   R     GAQ R  +L
Sbjct:   34 YYCYILGQTRHVRTGVGRTYNGYTVDLTHRLRQHNGEIKGGAFATKNKGPWEFIAVMTCLDWTSVRAMQVEWLIRYPTRKKPRPTEYAGAQGRINSL 130
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BLAST of jgi.p|Trimin1|174780 vs. uniprot
Match: A0A7L9AY03_POV01 (GIY-YIG domain-containing protein n=1 Tax=Pyramimonas orientalis virus TaxID=455367 RepID=A0A7L9AY03_POV01)

HSP 1 Score: 77.8 bits (190), Expect = 3.900e-15
Identity = 41/91 (45.05%), Postives = 57/91 (62.64%), Query Frame = 1 
Query:   10 YCYALCNDSGRTYIGYTVCPSRRLRQHNSSIKGGAKATRGRGPWRFIYVVEYINFTA-SEALSLEWHIKHPSKGIGR----RGAQARTEAL 267
            +CY + N+  RTY GYTV  ++RLRQHN+ IKGGA+AT  RGPW F+ V+    + + S A+  EW IK+P++   R     G   R E+L
Sbjct:    5 FCYIINNEQDRTYNGYTVDLTKRLRQHNNYIKGGARATSNRGPWSFLVVITSPCWQSISTAMQHEWSIKYPTRKRPRPKHYNGKTGRLESL 95
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BLAST of jgi.p|Trimin1|174780 vs. uniprot
Match: A0A3G4ZPN0_9VIRU (GIY-YIG nuclease n=1 Tax=Terrestrivirus sp. TaxID=2487775 RepID=A0A3G4ZPN0_9VIRU)

HSP 1 Score: 76.3 bits (186), Expect = 1.390e-14
Identity = 39/78 (50.00%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:    1 MSHYCYALCNDS----GRTYIGYTVCPSRRLRQHNSSIKGGAKATRGRGPWRFIYVVEYINFTASEALSLEWHIKHPS 222
            MS+YCY L + +      TY+G TV P+RRLRQHN  + GGAKAT+ R P+    ++     T  +ALS EWHIKHPS
Sbjct:    1 MSYYCYILRSVNPLYPNNTYVGMTVNPTRRLRQHNGELVGGAKATKTRQPYEMYCIISGFP-TLHDALSYEWHIKHPS 77
[Close]
BLAST of jgi.p|Trimin1|174780 vs. uniprot
Match: A0A497PCX4_9ARCH (GIY-YIG domain-containing protein n=1 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A497PCX4_9ARCH)

HSP 1 Score: 73.6 bits (179), Expect = 1.660e-13
Identity = 49/136 (36.03%), Postives = 69/136 (50.74%), Query Frame = 1 
Query:    4 SHYCYALCNDSG-RTYIGYTVCPSRRLRQHNSSIKGGAKATRGRGPWRFIYVVEYINFTASEALSLEWHIKHPSKGIGRR---GAQARTEALKCAFLRSKFTSKSA----DCRVHLTTEFARLQSHLPDVDVLLTD 387
            +HYCY L ND   +TY GYTV  ++RLRQHN  I GGA++T+    W++I +V       + AL  EW IK P      R   G + R + L       K+TS S        V +  ++  L + LPD  + +TD
Sbjct:    8 THYCYILQNDDNQKTYNGYTVNSTKRLRQHNGEITGGARSTKCSNTWKYICIVSGFPDKIN-ALQCEWRIKKPFNKRRTREYCGPEGRIKGLNHVLHLDKWTSNSVIVDFPLEVKILPKYKHLLTDLPDY-ITVTD 141
[Close]
BLAST of jgi.p|Trimin1|174780 vs. uniprot
Match: A0A388JXK1_CHABU (Structure-specific endonuclease subunit SLX1 homolog n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JXK1_CHABU)

HSP 1 Score: 76.6 bits (187), Expect = 1.880e-13
Identity = 53/128 (41.41%), Postives = 69/128 (53.91%), Query Frame = 1 
Query:   34 SGRTYIGYTVCPSRRLRQHNSSIKGGAKATRGRGPWRFIYVVEYINFTASEALSLEWHIKHPSKGIG-RRGAQA-RTEALKCAFLRSKFTSKSADCRVHLTTEFARLQSHLPDVDVLLTDAISIAKPD 411
            +G TY+G+TV P RRLRQHN SIK GA+ TR R PW  + VV Y     ++AL  EW  KHP K +  R  A+A R  A   A ++  FT  +     HL     R+Q    D  VL T+ +  A P+
Sbjct:   64 TGYTYVGFTVNPIRRLRQHNGSIKSGARQTRMRRPWEMVLVV-YGFQKQTQALRFEWAWKHPRKSVAVREAAKAVRARAGLKARIQILFTMLTVSAWRHLPI---RVQFLSRDYYVLYTNCLCPAVPE 187
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174780 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CN45_9STRA2.880e-126100.00GIY-YIG domain-containing protein n=1 Tax=Tribonem... [more]
A0A836CJ24_9STRA1.610e-4284.93GIY-YIG domain-containing protein (Fragment) n=2 T... [more]
A0A836CIF4_9STRA3.220e-2648.00GIY-YIG domain-containing protein n=1 Tax=Tribonem... [more]
A0A835ZCR8_9STRA1.300e-2357.97GIY-YIG domain-containing protein (Fragment) n=1 T... [more]
A0A6C0CV58_9ZZZZ6.600e-1751.32GIY-YIG domain-containing protein n=1 Tax=viral me... [more]
A0A6C0F1Y7_9ZZZZ4.920e-1644.33GIY-YIG domain-containing protein n=1 Tax=viral me... [more]
A0A7L9AY03_POV013.900e-1545.05GIY-YIG domain-containing protein n=1 Tax=Pyramimo... [more]
A0A3G4ZPN0_9VIRU1.390e-1450.00GIY-YIG nuclease n=1 Tax=Terrestrivirus sp. TaxID=... [more]
A0A497PCX4_9ARCH1.660e-1336.03GIY-YIG domain-containing protein n=1 Tax=Candidat... [more]
A0A388JXK1_CHABU1.880e-1341.41Structure-specific endonuclease subunit SLX1 homol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_117contigContig_117:391963..392484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|174780|e_gw1.117.22.1
BRITEko00000,ko00001,ko01000,ko03400
KEGG Pathwayko03460,map03460
KEGG koko:K15078
GOsGO:0000228,GO:0000723,GO:0001325,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008821,GO:0009893,GO:0009987,GO:0010604,GO:0010638,GO:0016043,GO:0016787,GO:0016788,GO:0016888,GO:0016889,GO:0016893,GO:0016894,GO:0017108,GO:0019219,GO:0019222,GO:0022607,GO:0031323,GO:0031325,GO:0031974,GO:0031981,GO:0032200,GO:0032204,GO:0032206,GO:0032991,GO:0033043,GO:0033044,GO:0033557,GO:0034641,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045935,GO:0046483,GO:0048256,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051052,GO:0051054,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051276,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090656,GO:0090737,GO:0140097,GO:1901360,GO:1904429,GO:1904431,GO:2001252
Description5'-flap endonuclease activity
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsKOG3005@1|root,KOG3005@2759|Eukaryota
Evalue3.21e-13
Seed ortholog529818.AMSG_08561T0
Hectar predicted targeting categoryother localisation
TranscriptId175102
TrackFilteredModels1
ProteinId174780
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174780gene_5126Tribonema minus UTEX_B_3156 geneContig_117 391963..392484 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5126_1exon_5126_1Tribonema minus UTEX_B_3156 exonContig_117 391963..392484 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5126CDS_5126Tribonema minus UTEX_B_3156 CDSContig_117 391963..392484 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174780Trimin1|174780|e_gw1.117.22.1Tribonema minus UTEX_B_3156 polypeptideContig_117 391963..392484 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5126 ID=mRNA_5126|Name=jgi.p|Trimin1|174780|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=522bp|location=Sequence derived from alignment at Contig_117:391963..392484- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCACTATTGCTATGCCTTATGCAATGACAGCGGACGGACTTATAT
AGGTTATACTGTATGCCCATCTAGGCGCCTACGGCAACATAATTCAAGTA
TCAAAGGCGGAGCAAAAGCCACGAGAGGGCGAGGGCCGTGGCGTTTCATA
TATGTCGTTGAGTATATCAACTTCACAGCCAGTGAGGCATTGTCACTTGA
ATGGCATATCAAGCACCCCTCCAAGGGAATCGGCAGGCGAGGCGCACAAG
CCAGGACCGAAGCTCTGAAATGTGCTTTCCTGCGCTCAAAGTTCACTAGC
AAATCTGCAGATTGCAGAGTGCACTTGACGACCGAGTTCGCTCGTTTGCA
GTCGCACTTGCCGGATGTTGATGTGCTGTTGACGGATGCAATCTCCATTG
CCAAACCCGACGGTAGGGTGCAGCTTGAAGCCTCCCCTACATGCTCCCCT
ACATGCTGCTCCACCCTAAAGGTCCCCTACATGCTTCTTCACCCTAAAGG
GTATAATCTTAAAAGTGAATAA
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protein sequence of jgi.p|Trimin1|174780

>Trimin1|174780|e_gw1.117.22.1 ID=Trimin1|174780|e_gw1.117.22.1|Name=jgi.p|Trimin1|174780|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=174bp
MSHYCYALCNDSGRTYIGYTVCPSRRLRQHNSSIKGGAKATRGRGPWRFI
YVVEYINFTASEALSLEWHIKHPSKGIGRRGAQARTEALKCAFLRSKFTS
KSADCRVHLTTEFARLQSHLPDVDVLLTDAISIAKPDGRVQLEASPTCSP
TCCSTLKVPYMLLHPKGYNLKSE*
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mRNA from alignment at Contig_117:391963..392484-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5126 ID=mRNA_5126|Name=jgi.p|Trimin1|174780|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=522bp|location=Sequence derived from alignment at Contig_117:391963..392484- (Tribonema minus UTEX_B_3156 )
ATGAGTCACTATTGCTATGCCTTATGCAATGACAGCGGACGGACTTATAT
AGGTTATACTGTATGCCCATCTAGGCGCCTACGGCAACATAATTCAAGTA
TCAAAGGCGGAGCAAAAGCCACGAGAGGGCGAGGGCCGTGGCGTTTCATA
TATGTCGTTGAGTATATCAACTTCACAGCCAGTGAGGCATTGTCACTTGA
ATGGCATATCAAGCACCCCTCCAAGGGAATCGGCAGGCGAGGCGCACAAG
CCAGGACCGAAGCTCTGAAATGTGCTTTCCTGCGCTCAAAGTTCACTAGC
AAATCTGCAGATTGCAGAGTGCACTTGACGACCGAGTTCGCTCGTTTGCA
GTCGCACTTGCCGGATGTTGATGTGCTGTTGACGGATGCAATCTCCATTG
CCAAACCCGACGGTAGGGTGCAGCTTGAAGCCTCCCCTACATGCTCCCCT
ACATGCTGCTCCACCCTAAAGGTCCCCTACATGCTTCTTCACCCTAAAGG
GTATAATCTTAAAAGTGAATAA
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Coding sequence (CDS) from alignment at Contig_117:391963..392484-

>mRNA_5126 ID=mRNA_5126|Name=jgi.p|Trimin1|174780|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=522bp|location=Sequence derived from alignment at Contig_117:391963..392484- (Tribonema minus UTEX_B_3156 )
ATGAGTCACTATTGCTATGCCTTATGCAATGACAGCGGACGGACTTATAT
AGGTTATACTGTATGCCCATCTAGGCGCCTACGGCAACATAATTCAAGTA
TCAAAGGCGGAGCAAAAGCCACGAGAGGGCGAGGGCCGTGGCGTTTCATA
TATGTCGTTGAGTATATCAACTTCACAGCCAGTGAGGCATTGTCACTTGA
ATGGCATATCAAGCACCCCTCCAAGGGAATCGGCAGGCGAGGCGCACAAG
CCAGGACCGAAGCTCTGAAATGTGCTTTCCTGCGCTCAAAGTTCACTAGC
AAATCTGCAGATTGCAGAGTGCACTTGACGACCGAGTTCGCTCGTTTGCA
GTCGCACTTGCCGGATGTTGATGTGCTGTTGACGGATGCAATCTCCATTG
CCAAACCCGACGGTAGGGTGCAGCTTGAAGCCTCCCCTACATGCTCCCCT
ACATGCTGCTCCACCCTAAAGGTCCCCTACATGCTTCTTCACCCTAAAGG
GTATAATCTTAAAAGTGAATAA
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