mRNA_5118 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|174764
Unique NamemRNA_5118
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|174764 vs. uniprot
Match: A0A835ZE92_9STRA (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE92_9STRA)

HSP 1 Score: 247 bits (630), Expect = 7.090e-83
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1 
Query:    1 MLTVRRLSVNAQPPTKKTPTSVCLQLYSAHNVTVPAHDKALVQTDLEIELPVSTYGRIVNKPGLSVDNEMDVYSPIIEAQNSSNVGIVIYNHGSSDFQVVRGDCIAQLIVHQAVIAHIQEQGCS 372
            MLTVRRLSVNAQPPTKKTPTSVCLQLYSAHNVTVPAHDKALVQTDLEIELPVSTYGRIVNKPGLSVDNEMDVYSPIIEAQNSSNVGIVIYNHGSSDFQVVRGDCIAQLIVHQAVIAHIQEQGCS
Sbjct:    1 MLTVRRLSVNAQPPTKKTPTSVCLQLYSAHNVTVPAHDKALVQTDLEIELPVSTYGRIVNKPGLSVDNEMDVYSPIIEAQNSSNVGIVIYNHGSSDFQVVRGDCIAQLIVHQAVIAHIQEQGCS 124
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BLAST of jgi.p|Trimin1|174764 vs. uniprot
Match: A0A835YZ59_9STRA (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ59_9STRA)

HSP 1 Score: 173 bits (439), Expect = 9.340e-54
Identity = 86/123 (69.92%), Postives = 102/123 (82.93%), Query Frame = 1 
Query:    1 MLTVRRLSVNAQPPTKKTPTSVCLQLYSAHNVTVPAHDKALVQTDLEIELPVSTYGRIVNKPGLSVDNEMDVYSPIIEAQNSSNVGIVIYNHGSSDFQVVRGDCIAQLIVHQAVIAHIQEQGC 369
            M+ VRRLS NA+ PTKK   SVCLQLYSAH+VTVP+H KALVQTDLE+E+P ST+GRIVNKPGLSVDNE+DVYSPIIE  +S NVG+V+YNHG +DF V  G C+AQL+V QAVI  ++E  C
Sbjct:    1 MIKVRRLSSNAKLPTKKASDSVCLQLYSAHDVTVPSHGKALVQTDLEMEVPFSTFGRIVNKPGLSVDNEIDVYSPIIE--HSGNVGVVLYNHGDNDFIVATGGCVAQLVVEQAVIVQVREGSC 121
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BLAST of jgi.p|Trimin1|174764 vs. uniprot
Match: A0A835ZCC1_9STRA (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC1_9STRA)

HSP 1 Score: 121 bits (304), Expect = 3.320e-33
Identity = 60/120 (50.00%), Postives = 85/120 (70.83%), Query Frame = 1 
Query:    1 MLTVRRLSVNAQPPTKKTPTSVCLQLYSAHNVTVPAHDKALVQTDLEIELPVSTYGRIVNKPGLSVDNEMDVYSPIIEAQNSSNVGIVIYNHGSSDFQVVRGDCIAQLIVHQAVIAHIQE 360
            ML V+RLS NA  PT+    +V   LYSAH+  +PAH+ ALV+TDL +++P S YGRI NK  L + N+++VY+ I++  ++ NVG+V++NH   D  V +GDCIAQLI+ Q VIA I+E
Sbjct:    1 MLNVQRLSENATLPTRAH-NAVGFDLYSAHSAVIPAHNNALVETDLSMQVPESAYGRITNKRRLGLKNKLEVYAGIVDGTHTGNVGVVLFNHADEDVTVNKGDCIAQLILEQVVIAQIKE 119
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BLAST of jgi.p|Trimin1|174764 vs. uniprot
Match: E2AWL7_CAMFO (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=2 Tax=Formicinae TaxID=7479 RepID=E2AWL7_CAMFO)

HSP 1 Score: 100 bits (248), Expect = 1.880e-24
Identity = 50/118 (42.37%), Postives = 75/118 (63.56%), Query Frame = 1 
Query:   16 RLSVNAQPPTKKTPTSVCLQLYSAHNVTVPAHDKALVQTDLEIELPVSTYGRIVNKPGLSVDNEMDVYSPIIEAQNSSNVGIVIYNHGSSDFQVVRGDCIAQLIVHQAVIAHIQEQGC 369
            +LS  A  PTK +  +    L SA+   +PAH K LV+TDL+IE+P+ TYGRI  + GL+  N +DV + +I+A    N+G+V++NH + DF+V  GD IAQLI  + +   ++E  C
Sbjct:   13 KLSDKAFAPTKGSEYAAGYDLRSAYKYIIPAHGKELVKTDLQIEVPLGTYGRIAPRSGLAWKNHLDVGAGVIDADYRGNLGVVLFNHSNEDFEVAPGDRIAQLICERIIYPKLEEVKC 130
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BLAST of jgi.p|Trimin1|174764 vs. uniprot
Match: A0A4P9YLX1_ROZAC (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A4P9YLX1_ROZAC)

HSP 1 Score: 99.8 bits (247), Expect = 3.570e-24
Identity = 52/119 (43.70%), Postives = 77/119 (64.71%), Query Frame = 1 
Query:    4 LTVRRLSVNAQPPTKKTPTSVCLQLYSAHNVTVPAHDKALVQTDLEIELPVSTYGRIVNKPGLSVDNEMDVYSPIIEAQNSSNVGIVIYNHGSSDFQVVRGDCIAQLIVHQAVIAHIQE 360
            L V++LS NAQ P + +P +    LYSA +  +P   KA+VQTD+ I +P  TYGR+  + GL+V N +DV + +I+A     VG+V++N G  +FQV +GD IAQLI+ +  +A I E
Sbjct:    9 LRVKKLSENAQIPKRGSPLAAGYDLYSAVDTVIPPKGKAIVQTDISIAVPEGTYGRVAPRSGLAVKNFIDVGAGVIDADYRGAVGVVLFNFGEVEFQVKKGDRIAQLILEKIEMADIME 127
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BLAST of jgi.p|Trimin1|174764 vs. uniprot
Match: UPI000E6E4237 (deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial n=1 Tax=Ctenocephalides felis TaxID=7515 RepID=UPI000E6E4237)

HSP 1 Score: 98.6 bits (244), Expect = 7.560e-24
Identity = 51/115 (44.35%), Postives = 74/115 (64.35%), Query Frame = 1 
Query:   16 RLSVNAQPPTKKTPTSVCLQLYSAHNVTVPAHDKALVQTDLEIELPVSTYGRIVNKPGLSVDNEMDVYSPIIEAQNSSNVGIVIYNHGSSDFQVVRGDCIAQLIVHQAVIAHIQE 360
            +LS NA PPTK +  +    L SA++  VPA DK +++TDL+IELP   YGRI  + GL+  N +DV + +I+     NVG+V++NH ++DF V RGD IAQLI  +     ++E
Sbjct:   13 KLSENAFPPTKGSEKAAGYDLKSAYDYVVPARDKLVIKTDLQIELPSECYGRIAPRSGLAAKNFIDVGAGVIDEDYRGNVGVVLFNHSAADFIVNRGDRIAQLICERIYYPKLEE 127
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BLAST of jgi.p|Trimin1|174764 vs. uniprot
Match: A0A1Z3GCM5_9POXV (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Seal parapoxvirus TaxID=187984 RepID=A0A1Z3GCM5_9POXV)

HSP 1 Score: 98.2 bits (243), Expect = 1.390e-23
Identity = 49/120 (40.83%), Postives = 78/120 (65.00%), Query Frame = 1 
Query:    1 MLTVRRLSVNAQPPTKKTPTSVCLQLYSAHNVTVPAHDKALVQTDLEIELPVSTYGRIVNKPGLSVDNEMDVYSPIIEAQNSSNVGIVIYNHGSSDFQVVRGDCIAQLIVHQAVIAHIQE 360
            +L V RLS +A  PT+ +  +    LYSAH+ TVPA  +A+V TD+++ +P   YGR+  + GL+V   +DV + +I+A    NVG++++N G+ DFQV RGD +AQLI  +  +  ++E
Sbjct:    9 VLRVVRLSASATLPTRGSALAAGCDLYSAHDCTVPARGRAVVFTDIQVGVPHGCYGRVAPRSGLAVSRFVDVGAGVIDADYRGNVGVLLFNFGAEDFQVRRGDRVAQLICERVALPSVRE 128
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BLAST of jgi.p|Trimin1|174764 vs. uniprot
Match: A0A836EY51_9HYME (Deoxyuridine 5'-triphosphate nucleotidohydrolase (Fragment) n=9 Tax=Attini TaxID=143999 RepID=A0A836EY51_9HYME)

HSP 1 Score: 99.0 bits (245), Expect = 1.900e-23
Identity = 52/120 (43.33%), Postives = 74/120 (61.67%), Query Frame = 1 
Query:    1 MLTVRRLSVNAQPPTKKTPTSVCLQLYSAHNVTVPAHDKALVQTDLEIELPVSTYGRIVNKPGLSVDNEMDVYSPIIEAQNSSNVGIVIYNHGSSDFQVVRGDCIAQLIVHQAVIAHIQE 360
            +L   +LS  A PP K +  +    L SA+   +P H K LV+TDL+IE+P  TYGRI  + GL+  N +DV + +I+A    NVG+V++NH + DF+VV GD IAQLI  +     I+E
Sbjct:   58 VLKFAKLSDKAFPPMKGSEYAAGYDLRSAYKYIIPGHGKELVKTDLQIEVPFGTYGRIAPRSGLAWKNHIDVGAGVIDADYRGNVGVVLFNHSNEDFEVVPGDRIAQLICEKITYPKIEE 177
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BLAST of jgi.p|Trimin1|174764 vs. uniprot
Match: UPI0012D3C044 (deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Contarinia nasturtii TaxID=265458 RepID=UPI0012D3C044)

HSP 1 Score: 97.4 bits (241), Expect = 2.200e-23
Identity = 49/115 (42.61%), Postives = 76/115 (66.09%), Query Frame = 1 
Query:   16 RLSVNAQPPTKKTPTSVCLQLYSAHNVTVPAHDKALVQTDLEIELPVSTYGRIVNKPGLSVDNEMDVYSPIIEAQNSSNVGIVIYNHGSSDFQVVRGDCIAQLIVHQAVIAHIQE 360
            +L+ +A  PTK +  +  L L SA++  VPA  KALV+TD++IE+PV TYGR+  + GL+  N +DV + +I+     NVG++++NH   DF V +GD IAQLI  + V  +++E
Sbjct:   14 KLTEHAFEPTKGSEQAAGLDLRSAYDAVVPARGKALVKTDIQIEVPVGTYGRVAPRSGLAWKNFIDVGAGVIDQDYRGNVGVILFNHSDVDFDVKKGDRIAQLICERIVYPNLKE 128
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BLAST of jgi.p|Trimin1|174764 vs. uniprot
Match: A0A6A7GAR1_9CRUS (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=2 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7GAR1_9CRUS)

HSP 1 Score: 97.8 bits (242), Expect = 2.490e-23
Identity = 51/119 (42.86%), Postives = 75/119 (63.03%), Query Frame = 1 
Query:    4 LTVRRLSVNAQPPTKKTPTSVCLQLYSAHNVTVPAHDKALVQTDLEIELPVSTYGRIVNKPGLSVDNEMDVYSPIIEAQNSSNVGIVIYNHGSSDFQVVRGDCIAQLIVHQAVIAHIQE 360
            L ++RLS  +  PT+ +P S    L SA++VT+P+  K LV+TDL   +P   YGR+  + GL+    +DV + +I+A    NVG+V++NHG+ D  V RGD IAQLI+ +  I  IQE
Sbjct:    4 LLIKRLSETSVLPTRGSPLSAGYDLSSAYDVTIPSRGKGLVKTDLAFAIPEGCYGRVAPRSGLAWKKHIDVGAGVIDADYRGNVGVVLFNHGTEDLIVKRGDRIAQLILEKIEIVPIQE 122
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174764 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZE92_9STRA7.090e-83100.00Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
A0A835YZ59_9STRA9.340e-5469.92Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
A0A835ZCC1_9STRA3.320e-3350.00Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
E2AWL7_CAMFO1.880e-2442.37Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
A0A4P9YLX1_ROZAC3.570e-2443.70Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
UPI000E6E42377.560e-2444.35deoxyuridine 5'-triphosphate nucleotidohydrolase, ... [more]
A0A1Z3GCM5_9POXV1.390e-2340.83Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
A0A836EY51_9HYME1.900e-2343.33Deoxyuridine 5'-triphosphate nucleotidohydrolase (... [more]
UPI0012D3C0442.200e-2342.61deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
A0A6A7GAR1_9CRUS2.490e-2342.86Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_117contigContig_117:372869..373243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|174764|e_gw1.117.103.1
BRITEko00000,ko00001,ko00002,ko01000,ko03400
KEGG rclassRC00002
KEGG ReactionR02100,R11896
KEGG ModuleM00053
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
KEGG koko:K01520
EC3.6.1.23
GOsGO:0000166,GO:0000287,GO:0001889,GO:0003674,GO:0003824,GO:0004170,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006220,GO:0006221,GO:0006226,GO:0006244,GO:0006259,GO:0006260,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009059,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009141,GO:0009143,GO:0009147,GO:0009149,GO:0009157,GO:0009162,GO:0009165,GO:0009166,GO:0009176,GO:0009177,GO:0009200,GO:0009204,GO:0009211,GO:0009213,GO:0009219,GO:0009221,GO:0009223,GO:0009262,GO:0009263,GO:0009264,GO:0009265,GO:0009394,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010469,GO:0010646,GO:0010648,GO:0014070,GO:0015949,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019103,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0022607,GO:0023051,GO:0023057,GO:0030545,GO:0030547,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032552,GO:0032556,GO:0034404,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0036094,GO:0042221,GO:0042975,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043393,GO:0043497,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046078,GO:0046080,GO:0046081,GO:0046385,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0047429,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051098,GO:0051259,GO:0051260,GO:0055086,GO:0061008,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070206,GO:0070207,GO:0071704,GO:0071840,GO:0072527,GO:0072528,GO:0072529,GO:0090304,GO:0090407,GO:0097159,GO:0097367,GO:0098772,GO:1901135,GO:1901136,GO:1901137,GO:1901265,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:2000272
Preferred nameDUT
DescriptiondUTPase
COG categoryF
Max annot lvl33208|Metazoa
EggNOG OGsCOG0756@1|root,KOG3370@2759|Eukaryota,3A3T2@33154|Opisthokonta,3BIEA@33208|Metazoa,3D1WG@33213|Bilateria,41ZF1@6656|Arthropoda,3SMHP@50557|Insecta,46IDW@7399|Hymenoptera
Evalue3.12e-24
Seed ortholog103372.F4WT78
Hectar predicted targeting categoryother localisation
TranscriptId175086
TrackFilteredModels1
ProteinId174764
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174764gene_5118Tribonema minus UTEX_B_3156 geneContig_117 372869..373243 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5118_1exon_5118_1Tribonema minus UTEX_B_3156 exonContig_117 372869..373243 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5118CDS_5118Tribonema minus UTEX_B_3156 CDSContig_117 372869..373243 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174764Trimin1|174764|e_gw1.117.103.1Tribonema minus UTEX_B_3156 polypeptideContig_117 372869..373243 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5118 ID=mRNA_5118|Name=jgi.p|Trimin1|174764|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=375bp|location=Sequence derived from alignment at Contig_117:372869..373243+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTTAACGGTTCGCAGACTCTCAGTAAATGCGCAACCGCCGACGAAGAA
AACTCCTACGTCAGTCTGCTTGCAGCTGTACTCTGCGCACAATGTAACAG
TGCCAGCCCATGACAAGGCGCTTGTACAAACTGATCTCGAAATTGAACTT
CCCGTAAGCACATATGGTCGCATCGTCAACAAGCCAGGGCTCAGCGTCGA
TAACGAGATGGATGTGTACTCGCCCATCATTGAGGCGCAGAACAGCAGCA
ACGTCGGCATTGTCATCTATAACCATGGCAGTAGCGATTTTCAAGTTGTG
CGGGGGGACTGCATCGCACAACTCATCGTACATCAAGCTGTAATCGCTCA
TATACAAGAACAGGGATGCAGTTGA
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protein sequence of jgi.p|Trimin1|174764

>Trimin1|174764|e_gw1.117.103.1 ID=Trimin1|174764|e_gw1.117.103.1|Name=jgi.p|Trimin1|174764|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=125bp
MLTVRRLSVNAQPPTKKTPTSVCLQLYSAHNVTVPAHDKALVQTDLEIEL
PVSTYGRIVNKPGLSVDNEMDVYSPIIEAQNSSNVGIVIYNHGSSDFQVV
RGDCIAQLIVHQAVIAHIQEQGCS*
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mRNA from alignment at Contig_117:372869..373243+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5118 ID=mRNA_5118|Name=jgi.p|Trimin1|174764|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=375bp|location=Sequence derived from alignment at Contig_117:372869..373243+ (Tribonema minus UTEX_B_3156 )
ATGTTAACGGTTCGCAGACTCTCAGTAAATGCGCAACCGCCGACGAAGAA
AACTCCTACGTCAGTCTGCTTGCAGCTGTACTCTGCGCACAATGTAACAG
TGCCAGCCCATGACAAGGCGCTTGTACAAACTGATCTCGAAATTGAACTT
CCCGTAAGCACATATGGTCGCATCGTCAACAAGCCAGGGCTCAGCGTCGA
TAACGAGATGGATGTGTACTCGCCCATCATTGAGGCGCAGAACAGCAGCA
ACGTCGGCATTGTCATCTATAACCATGGCAGTAGCGATTTTCAAGTTGTG
CGGGGGGACTGCATCGCACAACTCATCGTACATCAAGCTGTAATCGCTCA
TATACAAGAACAGGGATGCAGTTGA
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Coding sequence (CDS) from alignment at Contig_117:372869..373243+

>mRNA_5118 ID=mRNA_5118|Name=jgi.p|Trimin1|174764|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=375bp|location=Sequence derived from alignment at Contig_117:372869..373243+ (Tribonema minus UTEX_B_3156 )
ATGTTAACGGTTCGCAGACTCTCAGTAAATGCGCAACCGCCGACGAAGAA
AACTCCTACGTCAGTCTGCTTGCAGCTGTACTCTGCGCACAATGTAACAG
TGCCAGCCCATGACAAGGCGCTTGTACAAACTGATCTCGAAATTGAACTT
CCCGTAAGCACATATGGTCGCATCGTCAACAAGCCAGGGCTCAGCGTCGA
TAACGAGATGGATGTGTACTCGCCCATCATTGAGGCGCAGAACAGCAGCA
ACGTCGGCATTGTCATCTATAACCATGGCAGTAGCGATTTTCAAGTTGTG
CGGGGGGACTGCATCGCACAACTCATCGTACATCAAGCTGTAATCGCTCA
TATACAAGAACAGGGATGCAGTTGA
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