mRNA_5113 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|135847 vs. uniprot
Match: A0A836CM12_9STRA (Histidine kinase-like ATPase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM12_9STRA) HSP 1 Score: 428 bits (1101), Expect = 8.550e-152 Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 1 Query: 1 NQMLSYVNHKVRNPLNVIKGMVDLTVLTLTQCQLPPELSTCIWDLTIASRACDFLEHIVSGILVIQRWEAGALMLNLRPYRISDIVADMQNAIVHKMEENKMVALVVDCPADITVVVDEFRLKQMLLNLLSNAMKYTAAGTITIEVKRHEGGEVTIGVRDTGAGIPDSQKKLIFRAHVQLNANDVGRHGYHGLGLYLVSMLADCMGWTVRCES 639 NQMLSYVNHKVRNPLNVIKGMVDLTVLTLTQCQLPPELSTCIWDLTIASRACDFLEHIVSGILVIQRWEAGALMLNLRPYRISDIVADMQNAIVHKMEENKMVALVVDCPADITVVVDEFRLKQMLLNLLSNAMKYTAAGTITIEVKRHEGGEVTIGVRDTGAGIPDSQKKLIFRAHVQLNANDVGRHGYHGLGLYLVSMLADCMGWTVRCES Sbjct: 1 NQMLSYVNHKVRNPLNVIKGMVDLTVLTLTQCQLPPELSTCIWDLTIASRACDFLEHIVSGILVIQRWEAGALMLNLRPYRISDIVADMQNAIVHKMEENKMVALVVDCPADITVVVDEFRLKQMLLNLLSNAMKYTAAGTITIEVKRHEGGEVTIGVRDTGAGIPDSQKKLIFRAHVQLNANDVGRHGYHGLGLYLVSMLADCMGWTVRCES 213
BLAST of jgi.p|Trimin1|135847 vs. uniprot
Match: A0A835Z671_9STRA (Histidine kinase-like ATPase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z671_9STRA) HSP 1 Score: 311 bits (796), Expect = 5.680e-105 Identity = 150/213 (70.42%), Postives = 179/213 (84.04%), Query Frame = 1 Query: 1 NQMLSYVNHKVRNPLNVIKGMVDLTVLTLTQCQLPPELSTCIWDLTIASRACDFLEHIVSGILVIQRWEAGALMLNLRPYRISDIVADMQNAIVHKMEENKMVALVVDCPADITVVVDEFRLKQMLLNLLSNAMKYTAAGTITIEVKRHEGGEVTIGVRDTGAGIPDSQKKLIFRAHVQLNANDVGRHGYHGLGLYLVSMLADCMGWTVRCES 639 N MLSYVNH+VRNPLNVIKGMV+ T+LTL QC LPPEL TC+ DLT+ASRACDFLEHIVS ILV+QR EAGAL+LNL P+R+SDIV DM+ A+ HKMEE K V L+++CP DIT VVD F LKQ+LLN LSN+MKYT G+IT+ V +H+ GE+TIGV DTG+GIP++ +KLIF+AHVQL+A+D+GRHG HGLGLYLVSMLA M WTV S Sbjct: 10 NSMLSYVNHEVRNPLNVIKGMVEYTLLTLEQCALPPELGTCVADLTVASRACDFLEHIVSDILVLQRLEAGALVLNLHPHRVSDIVEDMREAVRHKMEEKKNVVLIIECPTDITAVVDAFGLKQILLNFLSNSMKYTDQGSITVRVTKHDSGEITIGVLDTGSGIPETHQKLIFQAHVQLDADDIGRHGSHGLGLYLVSMLAQRMNWTVGFHS 222
BLAST of jgi.p|Trimin1|135847 vs. uniprot
Match: A0A6N1NHF0_9VIRU (Histidine kinase n=1 Tax=Tupanvirus deep ocean TaxID=2126984 RepID=A0A6N1NHF0_9VIRU) HSP 1 Score: 152 bits (384), Expect = 2.410e-39 Identity = 89/221 (40.27%), Postives = 127/221 (57.47%), Query Frame = 1 Query: 4 QMLSYVNHKVRNPLNVIKGMVDLTVLTLTQ---------CQLPPELSTCIWDLTIASRACDFLEHIVSGILVIQRWEAGALMLNLRPYRISDIVADMQNAIVHKMEENKMVALVVDCPADITVVVDEFRLKQMLLNLLSNAMKYTAAGTITIEVKRHEGGEVTIGVRDTGAGIPDSQKKLIFRAHVQLNANDVGRHGYHGLGLYLVSMLADCMGWTVRCES 639 QML YVNH++RNPLNVIKG+V+ T+ + + C T + DL+ S +C+ LEHIV+ IL I + ++G L L+ + +I V D+ I K++E + + L V D+ + D +R+KQ+LLN L+NA+KYT G+ITI+++ G V DTG GI D K IF+ Q N D R+G GLGLYL ML + MG + ES Sbjct: 398 QMLGYVNHEIRNPLNVIKGLVEFTLHNMNKLDENKLDRICMDKMFYDTIVSDLSTVSGSCNMLEHIVTDILDINKLDSGKLELDNKWVKIRSFVNDISKTISQKIDEKQTIKLDVVYEHDLVLYFDIYRMKQILLNFLTNAVKYTLKGSITIKIEELNG-NYRFSVTDTGRGIKDEAKFRIFQPFNQTNPEDASRYGGIGLGLYLCKMLTERMGGKIGFES 617
BLAST of jgi.p|Trimin1|135847 vs. uniprot
Match: A0A6N1NZN1_9VIRU (Histidine kinase n=1 Tax=Tupanvirus soda lake TaxID=2126985 RepID=A0A6N1NZN1_9VIRU) HSP 1 Score: 149 bits (375), Expect = 4.350e-38 Identity = 87/221 (39.37%), Postives = 126/221 (57.01%), Query Frame = 1 Query: 4 QMLSYVNHKVRNPLNVIKGMVDLTVLTLTQ---------CQLPPELSTCIWDLTIASRACDFLEHIVSGILVIQRWEAGALMLNLRPYRISDIVADMQNAIVHKMEENKMVALVVDCPADITVVVDEFRLKQMLLNLLSNAMKYTAAGTITIEVKRHEGGEVTIGVRDTGAGIPDSQKKLIFRAHVQLNANDVGRHGYHGLGLYLVSMLADCMGWTVRCES 639 QML YVNH++RNPLNVIKG+V+ T+ +++ C T + DL+ S +C+ LEHIV+ IL I + ++G L L+ + +I + D+ I K++E + + L V D+ + D +R+KQ+LLN L+NA+KYT G I I+++ G V DTG GI D K IF+ Q N D R+G GLGLYL ML + MG + ES Sbjct: 398 QMLGYVNHEIRNPLNVIKGLVEFTLHNISKLDQNKVDRICMDKMFYDTIVSDLSTVSGSCNMLEHIVTDILDINKLDSGKLELDNKWVKIRTFMNDISKTISQKIDEKQTIKLEVIYEYDLVLYFDIYRMKQILLNFLTNAVKYTIKGKIIIKIEELNG-NYRFSVTDTGRGIKDDAKSRIFQPFNQTNPEDSSRYGGIGLGLYLCKMLTERMGGKIGFES 617
BLAST of jgi.p|Trimin1|135847 vs. uniprot
Match: A0A3G4ZXL8_9VIRU (Histidine kinase n=1 Tax=Edafosvirus sp. TaxID=2487765 RepID=A0A3G4ZXL8_9VIRU) HSP 1 Score: 145 bits (366), Expect = 7.400e-37 Identity = 85/227 (37.44%), Postives = 131/227 (57.71%), Query Frame = 1 Query: 1 NQMLSYVNHKVRNPLNVIKGMVDLTVLTL----------TQCQLPP-ELSTCIWDLTIASRACDFLEHIVSGILVIQRWEAGALMLNLRPYRISDIVADMQNAIVHKMEENKMVALVVDCPADI---TVVVDEFRLKQMLLNLLSNAMKYTAAGTITIEVKRHEGGEVTIGVRDTGAGIPDSQKKLIFRAHVQLNANDVGRHGYHGLGLYLVSMLADCMGWTVRCES 639 N+ML YVNH++RNPLNVI GMVD+T+ TL T Q+ ELS+ I DL A +C+ L HIV+ +L I++ E L+++ + + I+ K+ E V+ ++ ++ + +D+ RL Q+LLNL+ N++K+T G I ++++++ + V DTG GIPD K IF+ Q + D R+G GLGLYL +ML +CMG T+ ES Sbjct: 379 NKMLGYVNHEIRNPLNVINGMVDITIETLNNKIEKNTGGTNVQIQKDELSSVISDLYTAEGSCNMLRHIVNDVLDIRKLEDDKLVIDNEYINLDLFCKSIHKTIIPKLREKIDVSFSMEFKDNLENENIYIDKNRLSQILLNLIFNSIKFTIVGNIILKIRKNNS-NIIFEVNDTGRGIPDEAKSYIFQPFHQADKEDSSRYGGIGLGLYLCNMLVNCMGGTINFES 604
BLAST of jgi.p|Trimin1|135847 vs. uniprot
Match: UPI001559572C (response regulator n=1 Tax=Bowmanella denitrificans TaxID=366582 RepID=UPI001559572C) HSP 1 Score: 115 bits (287), Expect = 6.190e-26 Identity = 68/211 (32.23%), Postives = 119/211 (56.40%), Query Frame = 1 Query: 10 LSYVNHKVRNPLNVIKGMVDLTVLTLTQCQLPPELSTCIWDLTIASRACDFLEHIVSGILVIQRWEAGALMLNLRPYRISDIVADMQNAIVHKMEENKMVALV-VDCPADITVVVDEFRLKQMLLNLLSNAMKYTAAGTITIEVKRHEGGEVTIGVRDTGAGIPDSQKKLIFRAHVQLNANDVGRHGYHGLGLYLVSMLADCMGWTVRCES 639 L+ ++H++R P+N + GM+ L + Q L + + AS++ L +++ +L + EAG + ++L P + ++ ++ +N + L +D +V+VD RLKQ+L+NL+SNA+K+T AGT+T+ VKR GE+ GV+DTG GI ++Q+K IF++ Q + + R G GLGL + L + MG ++ S Sbjct: 761 LANMSHEIRTPMNAVIGMLQL----INQTSLTDKQQDYLSKAQSASKS---LLQLLNDVLDYSKIEAGKIDIDLHPADLESLIRELTVVFSGSQMKNSVELLYDIDTNLPKSVLVDSLRLKQVLINLVSNALKFTMAGTVTVVVKRQSNGEIQFGVKDTGIGITEAQQKKIFQSFSQADPSTARRFGGSGLGLVISRRLTNLMGGELQFTS 964
BLAST of jgi.p|Trimin1|135847 vs. uniprot
Match: A0A2V7SN72_9BACT (Histidine kinase n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2V7SN72_9BACT) HSP 1 Score: 113 bits (283), Expect = 1.690e-25 Identity = 81/213 (38.03%), Postives = 111/213 (52.11%), Query Frame = 1 Query: 4 QMLSYVNHKVRNPLNVIKGMVDLTVLTLTQCQLPPELSTCIWDLTIASRACDFLEHIVSGILVIQRWEAGALMLNLRPYRISDIVADMQNAIVHKMEENKMVALVVDCPADITVVVDEFRLKQMLLNLLSNAMKYT-AAGTITIEVKRHEGGEVTIGVRDTGAGIPDSQKKLIFRAHVQLNANDVGRHGYHGLGLYLVSMLADCMGWTVRCES 639 Q L+ ++H++R PLN I G +L L L P ++ DL R D L I+ IL R +AG L + ++D+VAD + + +M+ + +V P D V D R +Q+LLNLLSNA K+T A G I IE G EV I VRDTG GI +Q + IF VQ++A+ R G GLGL + LA MG T+ S Sbjct: 388 QFLAMMSHELRTPLNAIGGFTELLELGLHGPVTPEQVE----DLGRIRRNKDLLLSIIGDILEFARADAGVLSVKSEAVSVADLVADATDLVGAQMQAKGICFIVGPVPPDAVVRADRERAQQVLLNLLSNATKFTDAGGEIRIETTTGAG-EVRIEVRDTGRGIAAAQLEAIFEPFVQVDASLTRRTGGTGLGLAIARKLAVAMGGTLDARS 595
BLAST of jgi.p|Trimin1|135847 vs. uniprot
Match: UPI00166A911A (ATP-binding protein n=2 Tax=Dyella nitratireducens TaxID=1849580 RepID=UPI00166A911A) HSP 1 Score: 112 bits (281), Expect = 3.470e-25 Identity = 71/217 (32.72%), Postives = 121/217 (55.76%), Query Frame = 1 Query: 10 LSYVNHKVRNPLNVIKGMVDLTVLTLTQCQLPPELSTCIWDLTIASRACDFLEHIVSGILVIQRWEAGALMLNLRPYRISDIVADMQNAIVHKMEENKM-VALVVDCPADITVVVDEFRLKQMLLNLLSNAMKYTAAGTITIEV--KRHEGG----EVTIGVRDTGAGIPDSQKKLIFRAHVQLNANDVGRHGYHGLGLYLVSMLADCMGWTVRCES 639 L+ ++H++R PL+ + V+L LT L T AS + D L +V +L + + EA LML+ P + +V DM I H+++E + + L ++ P D+ V++D R++Q+++NLL+NA+K+T G++T++V R G ++++ V DTG GIP Q +F A+VQ ++ R+G GLGL + L + MG T+ S Sbjct: 326 LAVMSHEIRVPLSAVLSSVELLKLTRVNKNQRELLVT-------ASSSADALLRLVDDVLDLSKLEADGLMLDSTPTDVGKLVQDMVQIIRHRVDEKGLQLNLNINVPEDVCVLLDVTRIQQVMINLLTNAIKFTNQGSVTLDVALNRSSGDAASRKLSVSVCDTGIGIPPEQHTRLFHAYVQADSTIARRYGGTGLGLSISRQLIELMGGTITLRS 535
BLAST of jgi.p|Trimin1|135847 vs. uniprot
Match: UPI0003703D3C (response regulator n=1 Tax=Hoeflea sp. 108 TaxID=1116369 RepID=UPI0003703D3C) HSP 1 Score: 112 bits (279), Expect = 6.980e-25 Identity = 75/217 (34.56%), Postives = 123/217 (56.68%), Query Frame = 1 Query: 4 QMLSYVNHKVRNPLNVIKGMVDLTVLTLTQCQLPPELSTCIWDLTIASRACDFLEHIVSGILVIQRWEAGALMLNLRPYRISDIVADMQNAIVHKMEENKMVALVVDCPADIT--VVVDEFRLKQMLLNLLSNAMKYTAAGTITIEVKRHEGGEVT---IGVRDTGAGIPDSQKKLIFRAHVQLNANDVGRHGYHGLGLYLVSMLADCMGWTVRCES 639 + L+ ++H++R P+N + GM +L L + L P+ T D+ + S + L I++ IL + +AG L+L+ P+ +S+ + D+ I + +E K + L+V D+ V D R++Q++ NLL NA+K+T AG + ++V GE T I V DTG GIP+++ KL+F Q++A+ RH GLGL + S L D MG T+ ES Sbjct: 443 EFLANMSHEIRTPMNGVLGMAEL----LAKSDLDPKQRT-FTDIIVKSG--NALLTIINDILDFSKIDAGQLVLDPVPFNLSEAIEDVATLISTRAKE-KDLELIVRMQPDLKHLYVGDVGRIRQIVTNLLGNAVKFTDAGHVLVDVTGQHAGEATKLRIAVTDTGIGIPEAKLKLVFDKFSQVDASSTRRHEGTGLGLAITSRLVDMMGGTIGVES 651
BLAST of jgi.p|Trimin1|135847 vs. uniprot
Match: A0A501PMM8_9PROT (Histidine kinase n=1 Tax=Emcibacter nanhaiensis TaxID=1505037 RepID=A0A501PMM8_9PROT) HSP 1 Score: 111 bits (278), Expect = 8.920e-25 Identity = 71/214 (33.18%), Postives = 119/214 (55.61%), Query Frame = 1 Query: 4 QMLSYVNHKVRNPLNVIKGMVDLTVLTLTQCQLPPELSTCIWDLTIASRACDFLEHIVSGILVIQRWEAGALMLNLRPYRISDIVADMQNAIVHKMEENKMVALVVDCP--ADITVVVDEFRLKQMLLNLLSNAMKYTAAGTITIEVKRHEGGEVTIGVRDTGAGIPDSQKKLIFRAHVQLNANDVGRHGYHGLGLYLVSMLADCMGWTVRCES 639 + L+ ++H++R PLN + GM L L Q +L + + R+ L I++ IL + R E+G + L + + + ++ + + I ++ +K + VVD P D+T V D R+KQML+NLL NA+K+T AGTI++++ + G + VRDTG GIP Q++ IF Q++ V ++G GLGL + LA+ MG + +S Sbjct: 372 EFLANMSHEIRTPLNGVLGMCQL----LEQTKLDSRQREYAHTIMSSGRS---LLAIINDILDLSRIESGQMKLKMSDFNVLTVIKESMDTISYQAM-SKSLKTVVDVPKDCDLTYVGDPVRIKQMLVNLLGNAVKFTDAGTISLQLSLLDDGSLHFRVRDTGPGIPPDQQEAIFERFRQVDGTSVRQYGGTGLGLPICKSLAEMMGGEIGVKS 577 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|135847 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5113 ID=mRNA_5113|Name=jgi.p|Trimin1|135847|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=639bp|location=Sequence derived from alignment at Contig_117:364678..365316- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. AACCAAATGCTTTCCTATGTAAATCACAAGGTTCGAAACCCCCTGAACGTback to top protein sequence of jgi.p|Trimin1|135847 >Trimin1|135847|gw1.117.25.1 ID=Trimin1|135847|gw1.117.25.1|Name=jgi.p|Trimin1|135847|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=213bp NQMLSYVNHKVRNPLNVIKGMVDLTVLTLTQCQLPPELSTCIWDLTIASRback to top mRNA from alignment at Contig_117:364678..365316- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5113 ID=mRNA_5113|Name=jgi.p|Trimin1|135847|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=639bp|location=Sequence derived from alignment at Contig_117:364678..365316- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_117:364678..365316- >mRNA_5113 ID=mRNA_5113|Name=jgi.p|Trimin1|135847|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=639bp|location=Sequence derived from alignment at Contig_117:364678..365316- (Tribonema minus UTEX_B_3156 )back to top |