mRNA_5101 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|174716
Unique NamemRNA_5101
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|174716 vs. uniprot
Match: A0A835ZE82_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE82_9STRA)

HSP 1 Score: 217 bits (553), Expect = 2.030e-62
Identity = 371/371 (100.00%), Postives = 371/371 (100.00%), Query Frame = 1 
Query:    1 MPDWWSELNVALNLHKSEEEWLTLDTLDLQGRPNLEKLPKSIGKLRQLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAXNSXXXAVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTKIAALYMSGCTSLRVGDLAGTFGGVSAKDQMWGSLESLDVSGCDALSAVPGSISCLHKLQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGELHLPSSLTKLDLSGXVXXKRLPPKIGGLDKL 1113
            MPDWWSELNVALNLHKSEEEWLTLDTLDLQGRPNLEKLPKSIGKLRQLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAXNSXXXAVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTKIAALYMSGCTSLRVGDLAGTFGGVSAKDQMWGSLESLDVSGCDALSAVPGSISCLHKLQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGELHLPSSLTKLDLSGXVXXKRLPPKIGGLDKL
Sbjct:    1 MPDWWSELNVALNLHKSEEEWLTLDTLDLQGRPNLEKLPKSIGKLRQLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAXNSXXXAVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTKIAALYMSGCTSLRVGDLAGTFGGVSAKDQMWGSLESLDVSGCDALSAVPGSISCLHKLQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGELHLPSSLTKLDLSGXVXXKRLPPKIGGLDKL 371
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174716 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZE82_9STRA2.030e-62100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_117contigContig_117:316490..317800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|174716|e_gw1.117.77.1
Hectar predicted targeting categoryother localisation
TranscriptId175038
TrackFilteredModels1
ProteinId174716
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174716gene_5101Tribonema minus UTEX_B_3156 geneContig_117 316490..317800 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5101_1exon_5101_1Tribonema minus UTEX_B_3156 exonContig_117 316490..317800 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5101CDS_5101Tribonema minus UTEX_B_3156 CDSContig_117 316490..317800 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174716Trimin1|174716|e_gw1.117.77.1Tribonema minus UTEX_B_3156 polypeptideContig_117 316490..317800 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5101 ID=mRNA_5101|Name=jgi.p|Trimin1|174716|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1311bp|location=Sequence derived from alignment at Contig_117:316490..317800- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGATTGGTGGAGTGAGCTCAACGTCGCTTTAAACCTTCACAAGTC
GGAGGAGGAATGGCTGACCCTCGACACGCTTGACCTTCAAGGTCGGCCGA
ACCTCGAGAAGCTTCCGAAGTCCATTGGCAAGCTGCGCCAGCTCACTTCA
TTGACCCTGCGCGGCTGCACCAGTCTCCGCCAGCTTCCAGCTTCCATCGC
TCATCTACAGAGTCTCACGACACTCGATTTGAGTCAGTGCGGCGCGCTGA
ACTCCCTGCCGGCGGCTGTCGGCGGCCTGAAGCAGCTGGAGATACTTCGC
CTGCCGGGCTGCGTGAGTCTCCAGCAGCTTCCGGTGTTCATCGATGGCCT
GTGCGCCCTCCAGGAGCTCGACTTGAGTCAGTGCGCCGCGCTGGTCGGCC
TGCCGGCACACATATCCGGCCTGGCAAAGTTGCAGAAACTTCGGCTCAAC
AGCTGCGTCAGCCTCACGGAGCTGCCGGCGTCCATCGGCGGCCTGAGCGC
TCTCAAGGAGCTCGACTTGAGCCACTGCACTAGCTTCGAACACCTGCCTC
ATCAGGTCGGCAAACTGCAGAATCTCGAGACCCTGCTCCTGGCCGGCTGC
GCCAAGTTCAGGCATCTGCCGTGGTCCGTTGGCCAAACAAAAATCGCCGC
TCTCTACATGAGCGGCTGCACTTCGCTGCGAGTCGGCGACTTGGCGGGAA
CATTCGGCGGCGTTTCGGCCAAGGACCAGATGTGGGGATCGCTGGAGAGT
CTCGACGTGAGTGGCTGCGACGCCCTCTCCGCCGTTCCGGGCTCTATCAG
CTGCCTGCACAAACTGCAGGTCCTCAACCTCGGCGACTGCACCAGCCTCC
ACAAGTTACCAGACACCATCGGCCACCTCGGCAGCTTGCAGCGCCTCCAG
CTCCACGGATGCATTTCCCTCAGGTGCCTACCGCAGAACATCAGCAGCTT
GGCTCAGTTACATACGCTCGAGATGTGCCGCTGCAGCGCACTGGAGGAGC
TGCCTGAGGAAAACGGAGAGCTGCATCTGCCGTCGTCACTGACCAAGCTT
GACCTCAGCGGCTGTGTCGCTTTGAAGAGGCTCCCCCCAAAGATCGGAGG
CCTCGACAAACTCAACGAGCTTCTGCTGGCCGACTGCGAAGGGCTTCGGC
AGCTGCCCAGTACACTCTCATCCCTCAAGAGCCTTGAGGTGCTCAACTTG
ACGTCATGCTCCAATATCTGGCGCTTGCCGGAGTTGCCAAAAGAACTTCG
CGCACTGCAGATTGTAGACTGTTTCAGTCTGAAGAGCCTCCCCACGTTGC
CATCAGCACTC
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protein sequence of jgi.p|Trimin1|174716

>Trimin1|174716|e_gw1.117.77.1 ID=Trimin1|174716|e_gw1.117.77.1|Name=jgi.p|Trimin1|174716|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=437bp
MPDWWSELNVALNLHKSEEEWLTLDTLDLQGRPNLEKLPKSIGKLRQLTS
LTLRGCTSLRQLPASIAHLQSLTTLDLSQCGALNSLPAAVGGLKQLEILR
LPGCVSLQQLPVFIDGLCALQELDLSQCAALVGLPAHISGLAKLQKLRLN
SCVSLTELPASIGGLSALKELDLSHCTSFEHLPHQVGKLQNLETLLLAGC
AKFRHLPWSVGQTKIAALYMSGCTSLRVGDLAGTFGGVSAKDQMWGSLES
LDVSGCDALSAVPGSISCLHKLQVLNLGDCTSLHKLPDTIGHLGSLQRLQ
LHGCISLRCLPQNISSLAQLHTLEMCRCSALEELPEENGELHLPSSLTKL
DLSGCVALKRLPPKIGGLDKLNELLLADCEGLRQLPSTLSSLKSLEVLNL
TSCSNIWRLPELPKELRALQIVDCFSLKSLPTLPSAL
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mRNA from alignment at Contig_117:316490..317800-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5101 ID=mRNA_5101|Name=jgi.p|Trimin1|174716|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1311bp|location=Sequence derived from alignment at Contig_117:316490..317800- (Tribonema minus UTEX_B_3156 )
ATGCCCGATTGGTGGAGTGAGCTCAACGTCGCTTTAAACCTTCACAAGTC
GGAGGAGGAATGGCTGACCCTCGACACGCTTGACCTTCAAGGTCGGCCGA
ACCTCGAGAAGCTTCCGAAGTCCATTGGCAAGCTGCGCCAGCTCACTTCA
TTGACCCTGCGCGGCTGCACCAGTCTCCGCCAGCTTCCAGCTTCCATCGC
TCATCTACAGAGTCTCACGACACTCGATTTGAGTCAGTGCGGCGCGCTGA
ACTCCCTGCCGGCGGCTGTCGGCGGCCTGAAGCAGCTGGAGATACTTCGC
CTGCCGGGCTGCGTGAGTCTCCAGCAGCTTCCGGTGTTCATCGATGGCCT
GTGCGCCCTCCAGGAGCTCGACTTGAGTCAGTGCGCCGCGCTGGTCGGCC
TGCCGGCACACATATCCGGCCTGGCAAAGTTGCAGAAACTTCGGCTCAAC
AGCTGCGTCAGCCTCACGGAGCTGCCGGCGTCCATCGGCGGCCTGAGCGC
TCTCAAGGAGCTCGACTTGAGCCACTGCACTAGCTTCGAACACCTGCCTC
ATCAGGTCGGCAAACTGCAGAATCTCGAGACCCTGCTCCTGGCCGGCTGC
GCCAAGTTCAGGCATCTGCCGTGGTCCGTTGGCCAAACAAAAATCGCCGC
TCTCTACATGAGCGGCTGCACTTCGCTGCGAGTCGGCGACTTGGCGGGAA
CATTCGGCGGCGTTTCGGCCAAGGACCAGATGTGGGGATCGCTGGAGAGT
CTCGACGTGAGTGGCTGCGACGCCCTCTCCGCCGTTCCGGGCTCTATCAG
CTGCCTGCACAAACTGCAGGTCCTCAACCTCGGCGACTGCACCAGCCTCC
ACAAGTTACCAGACACCATCGGCCACCTCGGCAGCTTGCAGCGCCTCCAG
CTCCACGGATGCATTTCCCTCAGGTGCCTACCGCAGAACATCAGCAGCTT
GGCTCAGTTACATACGCTCGAGATGTGCCGCTGCAGCGCACTGGAGGAGC
TGCCTGAGGAAAACGGAGAGCTGCATCTGCCGTCGTCACTGACCAAGCTT
GACCTCAGCGGCTGTGTCGCTTTGAAGAGGCTCCCCCCAAAGATCGGAGG
CCTCGACAAACTCAACGAGCTTCTGCTGGCCGACTGCGAAGGGCTTCGGC
AGCTGCCCAGTACACTCTCATCCCTCAAGAGCCTTGAGGTGCTCAACTTG
ACGTCATGCTCCAATATCTGGCGCTTGCCGGAGTTGCCAAAAGAACTTCG
CGCACTGCAGATTGTAGACTGTTTCAGTCTGAAGAGCCTCCCCACGTTGC
CATCAGCACTC
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Coding sequence (CDS) from alignment at Contig_117:316490..317800-

>mRNA_5101 ID=mRNA_5101|Name=jgi.p|Trimin1|174716|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1311bp|location=Sequence derived from alignment at Contig_117:316490..317800- (Tribonema minus UTEX_B_3156 )
ATGCCCGATTGGTGGAGTGAGCTCAACGTCGCTTTAAACCTTCACAAGTC
GGAGGAGGAATGGCTGACCCTCGACACGCTTGACCTTCAAGGTCGGCCGA
ACCTCGAGAAGCTTCCGAAGTCCATTGGCAAGCTGCGCCAGCTCACTTCA
TTGACCCTGCGCGGCTGCACCAGTCTCCGCCAGCTTCCAGCTTCCATCGC
TCATCTACAGAGTCTCACGACACTCGATTTGAGTCAGTGCGGCGCGCTGA
ACTCCCTGCCGGCGGCTGTCGGCGGCCTGAAGCAGCTGGAGATACTTCGC
CTGCCGGGCTGCGTGAGTCTCCAGCAGCTTCCGGTGTTCATCGATGGCCT
GTGCGCCCTCCAGGAGCTCGACTTGAGTCAGTGCGCCGCGCTGGTCGGCC
TGCCGGCACACATATCCGGCCTGGCAAAGTTGCAGAAACTTCGGCTCAAC
AGCTGCGTCAGCCTCACGGAGCTGCCGGCGTCCATCGGCGGCCTGAGCGC
TCTCAAGGAGCTCGACTTGAGCCACTGCACTAGCTTCGAACACCTGCCTC
ATCAGGTCGGCAAACTGCAGAATCTCGAGACCCTGCTCCTGGCCGGCTGC
GCCAAGTTCAGGCATCTGCCGTGGTCCGTTGGCCAAACAAAAATCGCCGC
TCTCTACATGAGCGGCTGCACTTCGCTGCGAGTCGGCGACTTGGCGGGAA
CATTCGGCGGCGTTTCGGCCAAGGACCAGATGTGGGGATCGCTGGAGAGT
CTCGACGTGAGTGGCTGCGACGCCCTCTCCGCCGTTCCGGGCTCTATCAG
CTGCCTGCACAAACTGCAGGTCCTCAACCTCGGCGACTGCACCAGCCTCC
ACAAGTTACCAGACACCATCGGCCACCTCGGCAGCTTGCAGCGCCTCCAG
CTCCACGGATGCATTTCCCTCAGGTGCCTACCGCAGAACATCAGCAGCTT
GGCTCAGTTACATACGCTCGAGATGTGCCGCTGCAGCGCACTGGAGGAGC
TGCCTGAGGAAAACGGAGAGCTGCATCTGCCGTCGTCACTGACCAAGCTT
GACCTCAGCGGCTGTGTCGCTTTGAAGAGGCTCCCCCCAAAGATCGGAGG
CCTCGACAAACTCAACGAGCTTCTGCTGGCCGACTGCGAAGGGCTTCGGC
AGCTGCCCAGTACACTCTCATCCCTCAAGAGCCTTGAGGTGCTCAACTTG
ACGTCATGCTCCAATATCTGGCGCTTGCCGGAGTTGCCAAAAGAACTTCG
CGCACTGCAGATTGTAGACTGTTTCAGTCTGAAGAGCCTCCCCACGTTGC
CATCAGCACTC
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