mRNA_5071 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|174676
Unique NamemRNA_5071
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|174676 vs. uniprot
Match: A0A835ZCP1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCP1_9STRA)

HSP 1 Score: 717 bits (1850), Expect = 2.150e-259
Identity = 408/408 (100.00%), Postives = 408/408 (100.00%), Query Frame = 1 
Query:    1 MASICEDAHAAYSAEREAYTYSRNITHSAAQVAWGVLMGAPVTEHLHEKACDAGDMGVIRHLTHIDCPADVPSAAAAARNGNLRLMNFLRWQKXXXXXXXXXXXXXXXXXXXXXXXXXLTAGDEDGPDWLCAAVKGGNEDLIRDMLSRHYWGDAHTMMHAAGKSLKMVRLLLEDDDCGWDERAPDAAAEAGHVDVLAFLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAFDAECFWRRLHGALVDYDVVQFLVEEGHLDTMLLHGVTMTPGSTCTEARRAVRWMNDAGAPMSHRACEMAAREGNLQVLITLRSLRVEWDERVCTGAAEHAHLHVLKWAITHGCPYSGADLTFAALTFCNMAITEYLNDKEILTRPSVLGYEGMLHVSEECFTQRLSRWLLLHGYE 1224
            MASICEDAHAAYSAEREAYTYSRNITHSAAQVAWGVLMGAPVTEHLHEKACDAGDMGVIRHLTHIDCPADVPSAAAAARNGNLRLMNFLRWQKXXXXXXXXXXXXXXXXXXXXXXXXXLTAGDEDGPDWLCAAVKGGNEDLIRDMLSRHYWGDAHTMMHAAGKSLKMVRLLLEDDDCGWDERAPDAAAEAGHVDVLAFLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAFDAECFWRRLHGALVDYDVVQFLVEEGHLDTMLLHGVTMTPGSTCTEARRAVRWMNDAGAPMSHRACEMAAREGNLQVLITLRSLRVEWDERVCTGAAEHAHLHVLKWAITHGCPYSGADLTFAALTFCNMAITEYLNDKEILTRPSVLGYEGMLHVSEECFTQRLSRWLLLHGYE
Sbjct:    1 MASICEDAHAAYSAEREAYTYSRNITHSAAQVAWGVLMGAPVTEHLHEKACDAGDMGVIRHLTHIDCPADVPSAAAAARNGNLRLMNFLRWQKXXXXXXXXXXXXXXXXXXXXXXXXXLTAGDEDGPDWLCAAVKGGNEDLIRDMLSRHYWGDAHTMMHAAGKSLKMVRLLLEDDDCGWDERAPDAAAEAGHVDVLAFLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAFDAECFWRRLHGALVDYDVVQFLVEEGHLDTMLLHGVTMTPGSTCTEARRAVRWMNDAGAPMSHRACEMAAREGNLQVLITLRSLRVEWDERVCTGAAEHAHLHVLKWAITHGCPYSGADLTFAALTFCNMAITEYLNDKEILTRPSVLGYEGMLHVSEECFTQRLSRWLLLHGYE 408
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BLAST of jgi.p|Trimin1|174676 vs. uniprot
Match: A0A835Z7G2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7G2_9STRA)

HSP 1 Score: 303 bits (777), Expect = 2.820e-98
Identity = 150/290 (51.72%), Postives = 181/290 (62.41%), Query Frame = 1 
Query:  355 LTAGDEDGPDWLCAAVKGGNEDLIRDMLSRHYWGDAHTMMHAAGKSLKMVRLLLEDDDCGWDERAPDAAAEAGHVDVLAFLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAFDAECFWRRLHGALVDYDVVQFLVEEGHLDTMLLHGVTMTPGSTCTEARRAVRWMNDAGAPMSHRACEMAAREGNLQVLITLRSLRVEWDERVCTGAAEHAHLHVLKWAITHGCPYSGADLTFAALTFCNMAITEYLNDKEILTRPSVLGYEGMLHVSEECFTQRLSRWLLLHGYE 1224
            LTAGD+DGPDWLCAAV+GGN  L+R +LS HYW DAHT+ HAA KSL++V++L EDDDC WD RA +AAA AG +DVL +L                               IA D E FWR LHGA                                 +A  AV+WM  AG P++ + C  AAR+GNL VL  LRS+ V WDE+VCT AAEHAHLHVLKWAI +GCPYS  DLTFAALT CNMA+ +YL+D+++LT PS+LGY  M+ V+E C TQRLSRWLL HGY+
Sbjct:   29 LTAGDDDGPDWLCAAVEGGNPRLVRHLLSSHYWSDAHTITHAAAKSLELVKMLREDDDCEWDARAGNAAAHAGLIDVLDYLSGSGCEIEGNIHSIAAKSGHVHVMRWAHQKGIAMDEEWFWRHLHGA---------------------------------QAHEAVQWMKGAGIPVTSKVCVTAARDGNLSVLAALRSMNVTWDEQVCTSAAEHAHLHVLKWAIKNGCPYSAPDLTFAALTSCNMAVIQYLSDQQLLTPPSILGYHEMMRVTEACDTQRLSRWLLKHGYQ 285
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BLAST of jgi.p|Trimin1|174676 vs. uniprot
Match: A0A836CFK4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFK4_9STRA)

HSP 1 Score: 285 bits (730), Expect = 1.160e-91
Identity = 136/252 (53.97%), Postives = 170/252 (67.46%), Query Frame = 1 
Query:  469 MMHAAGKSLKMVRLLLEDDDCGWDERAPDAAAEAGHVDVLAFLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAFDAECFWRRLHGALVDYDVVQFLVEEGHLDTMLLHGVTMTPGSTCTEARRAVRWMNDAGAPMSHRACEMAAREGNLQVLITLRSLRVEWDERVCTGAAEHAHLHVLKWAITHGCPYSGADLTFAALTFCNMAITEYLNDKEILTRPSVLGYEGMLHVSEECFTQRLSRWLLLHGYE 1224
            M HAA KSLK+V+LL E+DDC WD RA +AAA AG +DVL +L                               I  D E FWR LHGA +   V Q+L ++GH+D+MLLH V++ PG T  EA  AV+WM  AG P++ R C  AAR+GNL VL  LRS+ V W+E+VCT AA+HAHLH+LKWA+ +GCPYS  DLTFAALT CNMA+ +YL+DK++LT PS+LGY  M+HV+E C TQRLSRWLL HGY+
Sbjct:    1 MTHAAAKSLKLVKLLREEDDCEWDVRAGNAAAHAGLIDVLDYLSDSGCEIEANVHSIAAESGHVHVMRWAHQKGIVMDEEWFWRHLHGAQLTLSVAQYLADKGHIDSMLLHDVSVAPGVTRQEAHEAVQWMKGAGIPVTPRVCAAAARDGNLSVLAALRSMNVTWNEQVCTSAADHAHLHILKWAMKNGCPYSAPDLTFAALTSCNMAVIQYLSDKQLLTPPSILGYHEMMHVTEACDTQRLSRWLLKHGYQ 252
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174676 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835ZCP1_9STRA2.150e-259100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z7G2_9STRA2.820e-9851.72Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CFK4_9STRA1.160e-9153.97Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_117contigContig_117:238830..240056 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|174676|e_gw1.117.8.1
Hectar predicted targeting categoryother localisation
TranscriptId174998
TrackFilteredModels1
ProteinId174676
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174676gene_5071Tribonema minus UTEX_B_3156 geneContig_117 238830..240056 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5071_1exon_5071_1Tribonema minus UTEX_B_3156 exonContig_117 238830..240056 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5071CDS_5071Tribonema minus UTEX_B_3156 CDSContig_117 238830..240056 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174676Trimin1|174676|e_gw1.117.8.1Tribonema minus UTEX_B_3156 polypeptideContig_117 238830..240056 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5071 ID=mRNA_5071|Name=jgi.p|Trimin1|174676|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1227bp|location=Sequence derived from alignment at Contig_117:238830..240056+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCGATATGCGAGGACGCACACGCCGCGTACAGTGCTGAGCGTGA
GGCCTACACGTACTCGCGGAATATTACGCACAGTGCCGCCCAAGTCGCGT
GGGGCGTGCTCATGGGCGCTCCGGTTACTGAGCACCTGCACGAGAAGGCA
TGCGACGCAGGTGACATGGGCGTGATCAGGCACCTCACTCACATCGATTG
CCCTGCTGATGTGCCCAGCGCGGCAGCTGCAGCAAGAAATGGAAACTTGA
GATTGATGAATTTTTTGAGGTGGCAGAAGGCGCCGATAGACTATTCTGCC
GCTGAAGCCGCTGCGGAAGCCGGCCACTTTCAAATGTTCAAGGGCCTGAT
GTGGCTGACCGCAGGGGATGAAGACGGCCCCGACTGGCTGTGTGCAGCAG
TGAAGGGCGGCAATGAGGACCTCATCCGAGATATGCTGTCGAGGCACTAC
TGGGGTGATGCCCACACGATGATGCATGCGGCGGGCAAGTCCCTGAAAAT
GGTCAGGCTCTTATTGGAAGATGATGACTGCGGGTGGGACGAGAGAGCCC
CCGACGCGGCTGCCGAAGCTGGACATGTCGACGTCCTCGCCTTCCTCATG
GACAACGGATGTCCGATAGACCCGAGCATATACAGCATCGCCGCAGAGCG
TGGGCACGGCGCCGTCATGCAGTGGGCGAAGGAGGAGGGGATCGCGTTCG
ATGCGGAGTGTTTCTGGCGACGCTTGCACGGAGCACTGGTAGATTACGAT
GTGGTGCAATTTCTCGTGGAGGAGGGCCACCTCGACACGATGCTACTACA
CGGTGTGACCATGACACCCGGGTCGACGTGCACAGAGGCGCGCAGGGCCG
TGCGCTGGATGAATGACGCAGGAGCGCCGATGTCACACAGAGCATGCGAG
ATGGCTGCGAGGGAGGGGAACCTGCAAGTCTTGATCACGTTGAGGTCCCT
GCGAGTAGAGTGGGACGAGAGAGTCTGCACCGGGGCCGCCGAGCACGCTC
ACCTGCACGTCCTCAAGTGGGCGATCACGCATGGATGCCCGTACTCCGGC
GCAGACTTGACGTTCGCAGCACTCACATTTTGCAACATGGCAATCACAGA
ATACTTGAACGACAAGGAGATATTAACCCGGCCCAGCGTCCTGGGGTATG
AAGGGATGTTGCACGTATCAGAAGAGTGCTTCACGCAGCGTCTATCGAGG
TGGCTGCTGCTGCACGGGTACGAGTAG
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protein sequence of jgi.p|Trimin1|174676

>Trimin1|174676|e_gw1.117.8.1 ID=Trimin1|174676|e_gw1.117.8.1|Name=jgi.p|Trimin1|174676|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=409bp
MASICEDAHAAYSAEREAYTYSRNITHSAAQVAWGVLMGAPVTEHLHEKA
CDAGDMGVIRHLTHIDCPADVPSAAAAARNGNLRLMNFLRWQKAPIDYSA
AEAAAEAGHFQMFKGLMWLTAGDEDGPDWLCAAVKGGNEDLIRDMLSRHY
WGDAHTMMHAAGKSLKMVRLLLEDDDCGWDERAPDAAAEAGHVDVLAFLM
DNGCPIDPSIYSIAAERGHGAVMQWAKEEGIAFDAECFWRRLHGALVDYD
VVQFLVEEGHLDTMLLHGVTMTPGSTCTEARRAVRWMNDAGAPMSHRACE
MAAREGNLQVLITLRSLRVEWDERVCTGAAEHAHLHVLKWAITHGCPYSG
ADLTFAALTFCNMAITEYLNDKEILTRPSVLGYEGMLHVSEECFTQRLSR
WLLLHGYE*
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mRNA from alignment at Contig_117:238830..240056+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5071 ID=mRNA_5071|Name=jgi.p|Trimin1|174676|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1227bp|location=Sequence derived from alignment at Contig_117:238830..240056+ (Tribonema minus UTEX_B_3156 )
ATGGCGTCGATATGCGAGGACGCACACGCCGCGTACAGTGCTGAGCGTGA
GGCCTACACGTACTCGCGGAATATTACGCACAGTGCCGCCCAAGTCGCGT
GGGGCGTGCTCATGGGCGCTCCGGTTACTGAGCACCTGCACGAGAAGGCA
TGCGACGCAGGTGACATGGGCGTGATCAGGCACCTCACTCACATCGATTG
CCCTGCTGATGTGCCCAGCGCGGCAGCTGCAGCAAGAAATGGAAACTTGA
GATTGATGAATTTTTTGAGGTGGCAGAAGGCGCCGATAGACTATTCTGCC
GCTGAAGCCGCTGCGGAAGCCGGCCACTTTCAAATGTTCAAGGGCCTGAT
GTGGCTGACCGCAGGGGATGAAGACGGCCCCGACTGGCTGTGTGCAGCAG
TGAAGGGCGGCAATGAGGACCTCATCCGAGATATGCTGTCGAGGCACTAC
TGGGGTGATGCCCACACGATGATGCATGCGGCGGGCAAGTCCCTGAAAAT
GGTCAGGCTCTTATTGGAAGATGATGACTGCGGGTGGGACGAGAGAGCCC
CCGACGCGGCTGCCGAAGCTGGACATGTCGACGTCCTCGCCTTCCTCATG
GACAACGGATGTCCGATAGACCCGAGCATATACAGCATCGCCGCAGAGCG
TGGGCACGGCGCCGTCATGCAGTGGGCGAAGGAGGAGGGGATCGCGTTCG
ATGCGGAGTGTTTCTGGCGACGCTTGCACGGAGCACTGGTAGATTACGAT
GTGGTGCAATTTCTCGTGGAGGAGGGCCACCTCGACACGATGCTACTACA
CGGTGTGACCATGACACCCGGGTCGACGTGCACAGAGGCGCGCAGGGCCG
TGCGCTGGATGAATGACGCAGGAGCGCCGATGTCACACAGAGCATGCGAG
ATGGCTGCGAGGGAGGGGAACCTGCAAGTCTTGATCACGTTGAGGTCCCT
GCGAGTAGAGTGGGACGAGAGAGTCTGCACCGGGGCCGCCGAGCACGCTC
ACCTGCACGTCCTCAAGTGGGCGATCACGCATGGATGCCCGTACTCCGGC
GCAGACTTGACGTTCGCAGCACTCACATTTTGCAACATGGCAATCACAGA
ATACTTGAACGACAAGGAGATATTAACCCGGCCCAGCGTCCTGGGGTATG
AAGGGATGTTGCACGTATCAGAAGAGTGCTTCACGCAGCGTCTATCGAGG
TGGCTGCTGCTGCACGGGTACGAGTAG
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Coding sequence (CDS) from alignment at Contig_117:238830..240056+

>mRNA_5071 ID=mRNA_5071|Name=jgi.p|Trimin1|174676|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1227bp|location=Sequence derived from alignment at Contig_117:238830..240056+ (Tribonema minus UTEX_B_3156 )
ATGGCGTCGATATGCGAGGACGCACACGCCGCGTACAGTGCTGAGCGTGA
GGCCTACACGTACTCGCGGAATATTACGCACAGTGCCGCCCAAGTCGCGT
GGGGCGTGCTCATGGGCGCTCCGGTTACTGAGCACCTGCACGAGAAGGCA
TGCGACGCAGGTGACATGGGCGTGATCAGGCACCTCACTCACATCGATTG
CCCTGCTGATGTGCCCAGCGCGGCAGCTGCAGCAAGAAATGGAAACTTGA
GATTGATGAATTTTTTGAGGTGGCAGAAGGCGCCGATAGACTATTCTGCC
GCTGAAGCCGCTGCGGAAGCCGGCCACTTTCAAATGTTCAAGGGCCTGAT
GTGGCTGACCGCAGGGGATGAAGACGGCCCCGACTGGCTGTGTGCAGCAG
TGAAGGGCGGCAATGAGGACCTCATCCGAGATATGCTGTCGAGGCACTAC
TGGGGTGATGCCCACACGATGATGCATGCGGCGGGCAAGTCCCTGAAAAT
GGTCAGGCTCTTATTGGAAGATGATGACTGCGGGTGGGACGAGAGAGCCC
CCGACGCGGCTGCCGAAGCTGGACATGTCGACGTCCTCGCCTTCCTCATG
GACAACGGATGTCCGATAGACCCGAGCATATACAGCATCGCCGCAGAGCG
TGGGCACGGCGCCGTCATGCAGTGGGCGAAGGAGGAGGGGATCGCGTTCG
ATGCGGAGTGTTTCTGGCGACGCTTGCACGGAGCACTGGTAGATTACGAT
GTGGTGCAATTTCTCGTGGAGGAGGGCCACCTCGACACGATGCTACTACA
CGGTGTGACCATGACACCCGGGTCGACGTGCACAGAGGCGCGCAGGGCCG
TGCGCTGGATGAATGACGCAGGAGCGCCGATGTCACACAGAGCATGCGAG
ATGGCTGCGAGGGAGGGGAACCTGCAAGTCTTGATCACGTTGAGGTCCCT
GCGAGTAGAGTGGGACGAGAGAGTCTGCACCGGGGCCGCCGAGCACGCTC
ACCTGCACGTCCTCAAGTGGGCGATCACGCATGGATGCCCGTACTCCGGC
GCAGACTTGACGTTCGCAGCACTCACATTTTGCAACATGGCAATCACAGA
ATACTTGAACGACAAGGAGATATTAACCCGGCCCAGCGTCCTGGGGTATG
AAGGGATGTTGCACGTATCAGAAGAGTGCTTCACGCAGCGTCTATCGAGG
TGGCTGCTGCTGCACGGGTACGAGTAG
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