mRNA_5054 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|174751 vs. uniprot
Match: A0A835ZCN1_9STRA (Peptidase C14, caspase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCN1_9STRA) HSP 1 Score: 500 bits (1288), Expect = 4.380e-179 Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 1 Query: 1 MSRSRALCIGINYGKTANALQGCVNDANNLSKLLDGSGAVAMEDITVLCEPTGEELCNAISHLADLSVSQNLNYVFISYSGHGTQVKDVTGDEADGRDEAICPSDFNIKGVITDDLLKSLLQRFNIATTVCFLADACHSGSLLDMNRQYTSKICTLSGDAELPGKIAYISGCRDPQTSADAYDQDSRTYQGVMTCARIKSQKINPATRTDVFKLVAEMRKLLRAQGYAQIPVLTASFDIPRAFSFIPYK 747 MSRSRALCIGINYGKTANALQGCVNDANNLSKLLDGSGAVAMEDITVLCEPTGEELCNAISHLADLSVSQNLNYVFISYSGHGTQVKDVTGDEADGRDEAICPSDFNIKGVITDDLLKSLLQRFNIATTVCFLADACHSGSLLDMNRQYTSKICTLSGDAELPGKIAYISGCRDPQTSADAYDQDSRTYQGVMTCARIKSQKINPATRTDVFKLVAEMRKLLRAQGYAQIPVLTASFDIPRAFSFIPYK Sbjct: 1 MSRSRALCIGINYGKTANALQGCVNDANNLSKLLDGSGAVAMEDITVLCEPTGEELCNAISHLADLSVSQNLNYVFISYSGHGTQVKDVTGDEADGRDEAICPSDFNIKGVITDDLLKSLLQRFNIATTVCFLADACHSGSLLDMNRQYTSKICTLSGDAELPGKIAYISGCRDPQTSADAYDQDSRTYQGVMTCARIKSQKINPATRTDVFKLVAEMRKLLRAQGYAQIPVLTASFDIPRAFSFIPYK 249
BLAST of jgi.p|Trimin1|174751 vs. uniprot
Match: A0A835YZ34_9STRA (Caspase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ34_9STRA) HSP 1 Score: 394 bits (1012), Expect = 5.950e-136 Identity = 191/249 (76.71%), Postives = 219/249 (87.95%), Query Frame = 1 Query: 1 MSRSRALCIGINYGKTANALQGCVNDANNLSKLLDGSGAVAMEDITVLCEPTGEELCNAISHLADLSVSQNLNYVFISYSGHGTQVKDVTGDEADGRDEAICPSDFNIKGVITDDLLKSLLQRFNIATTVCFLADACHSGSLLDMNRQYTSKICTLSGDAELPGKIAYISGCRDPQTSADAYDQDSRTYQGVMTCARIKSQKINPATRTDVFKLVAEMRKLLRAQGYAQIPVLTASFDIPRAFSFIPYK 747 M +S+ALCIGINYGKTANALQGCVNDA NL KLL SGAVA EDITVLCEPTGEE+CNAIS LA+LS SQ+L+Y FISYSGHGTQ+KD TGDE DG+DEAICP+DF ++GVITDDLLKSLLQ+FN TTVCFLADACHSGS+LD+NR YTS++CTLSGDA LPGKIAYISGCRD QTSADA+DQDSR + G MT A IK+QK++ T DVF LVA M+KLLRA GY+QIPVL++SFDIPR F+FIP++ Sbjct: 1 MGKSKALCIGINYGKTANALQGCVNDAKNLQKLLVDSGAVAAEDITVLCEPTGEEICNAISKLAELSKSQDLDYTFISYSGHGTQIKDTTGDETDGKDEAICPADFGMRGVITDDLLKSLLQQFNNDTTVCFLADACHSGSMLDLNRTYTSRLCTLSGDATLPGKIAYISGCRDTQTSADAFDQDSRQFTGAMTSALIKAQKLDEETHHDVFALVAGMKKLLRAGGYSQIPVLSSSFDIPRQFAFIPHR 249
BLAST of jgi.p|Trimin1|174751 vs. uniprot
Match: A0A835Z623_9STRA (Peptidase C14 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z623_9STRA) HSP 1 Score: 390 bits (1003), Expect = 1.180e-135 Identity = 188/248 (75.81%), Postives = 218/248 (87.90%), Query Frame = 1 Query: 1 MSRSRALCIGINYGKTANALQGCVNDANNLSKLLDGSGAVAMEDITVLCEPTGEELCNAISHLADLSVSQNLNYVFISYSGHGTQVKDVTGDEADGRDEAICPSDFNIKGVITDDLLKSLLQRFNIATTVCFLADACHSGSLLDMNRQYTSKICTLSGDAELPGKIAYISGCRDPQTSADAYDQDSRTYQGVMTCARIKSQKINPATRTDVFKLVAEMRKLLRAQGYAQIPVLTASFDIPRAFSFIPY 744 M +S+ALCIGINYGKTANALQGCVNDA NL KLL SGAVA EDITVLCEPTGE++CNAIS LA+LS SQ+L+Y+FISYSGHGTQ+KD TGDE DG+DEAICP+DF +GVITDDLLKSLLQ+FN TTVCFLADACHSGS+LD+NR YTS++CTLSG+A LPGKIAYISGCRD QTSADA+DQDSR + G MT A IK+ K++ T DVF LVA+M+KLLRA GY+QIPVL++SFDIPR F+FIP+ Sbjct: 1 MGKSKALCIGINYGKTANALQGCVNDAKNLQKLLVDSGAVAAEDITVLCEPTGEDICNAISKLAELSKSQDLDYIFISYSGHGTQIKDTTGDETDGKDEAICPADFGTRGVITDDLLKSLLQQFNNDTTVCFLADACHSGSMLDLNRTYTSRLCTLSGEATLPGKIAYISGCRDTQTSADAFDQDSRQFTGAMTSALIKAHKVDEETHHDVFALVADMKKLLRAGGYSQIPVLSSSFDIPRQFAFIPH 248
BLAST of jgi.p|Trimin1|174751 vs. uniprot
Match: A0A836CI31_9STRA (Peptidase C14, caspase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI31_9STRA) HSP 1 Score: 290 bits (741), Expect = 9.390e-96 Identity = 145/247 (58.70%), Postives = 178/247 (72.06%), Query Frame = 1 Query: 4 SRSRALCIGINYGKTANALQGCVNDANNLSKLLDGSGAVAMEDITVLCEPTGEELCNAISHLADLSVSQNLNYVFISYSGHGTQVKDVTGDEADGRDEAICPSDFNIKGVITDDLLKSLLQRFNIATTVCFLADACHSGSLLDMNRQYTSKICTLSGDAELPGKIAYISGCRDPQTSADAYDQDSRTYQGVMTCARIKSQKINPATRTDVFKLVAEMRKLLRAQGYAQIPVLTASFDIPRAFSFIPY 744 ++SRALCIGINY +++ALQGC+NDA NLS LL+ SGAVA +I +LCE T ++ +++LA L Y FISYSGHGTQV D+ DE DG+DE ICPSDF GVITDD+LK + +F TTVCFL DACHSGS+LD+N Y + I T+SG L K+ ISGCRD QTSADA+DQ S Y G MT A +KS K A RTDV +LVAEMRK+LRA G++Q PVL+ SF +PR F+FIPY Sbjct: 3 TKSRALCIGINYTGSSSALQGCINDAKNLSALLNASGAVASANIQLLCEATAAQIHEGLTNLAQKCKDDKLTYAFISYSGHGTQVADLNKDETDGKDECICPSDFTKSGVITDDMLKDRIAQFPSWTTVCFLCDACHSGSMLDLNHTYVNSIDTVSGTNSLACKVVMISGCRDNQTSADAFDQSSSAYTGAMTSAMLKSLKNVFACRTDVIRLVAEMRKVLRAGGFSQYPVLSTSFTLPRQFAFIPY 249
BLAST of jgi.p|Trimin1|174751 vs. uniprot
Match: A0A836CKL4_9STRA (Putative caspase-1, p20 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKL4_9STRA) HSP 1 Score: 199 bits (506), Expect = 4.060e-60 Identity = 113/245 (46.12%), Postives = 151/245 (61.63%), Query Frame = 1 Query: 10 SRALCIGINYGKTANALQGCVNDANNLSKLLDGSGAVAMEDITVLCEPTGEELCNAISHLADLSVSQNLNYVFISYSGHGTQVKDVTGDEADGRDEAICPSDFNIKGVITDDLLKSLLQRFNIATTVCFLADACHSGSLLDMNRQYTSKICTLSGDAELPGK-IAYISGCRDPQTSADAYDQDSRTYQGVMTCARIKSQKINPATRTDVFKLVAEMRKLLRAQGYAQIPVLTASFDIPRAFSFIP 741 SRAL + NY T L+GC ND + L L SGAV + VL E + + A+ LA S + L YVFI+YSGHGTQV+D GDEADG DEAICP D GV++DDLL+ + F T+V F+ DACHSGS+LD+ Y + C +G A G+ + ISGCRD QTSADA+ ++ Y G +T ++S + P R DVF+LV E + L+ G+ Q+PVL++SF IPR +F+P Sbjct: 3 SRALLLCNNYVGTDAELRGCHNDGDCLKAALVSSGAVPEGRVRVLREASAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAICPGDVETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYDGRRCADAGAASDVGRRVLMISGCRDSQTSADAFLGGTQ-YGGALTDCLLRSLRDVPEARGDVFRLVHETCRRLKEGGFDQVPVLSSSFLIPRRHAFMP 246
BLAST of jgi.p|Trimin1|174751 vs. uniprot
Match: A0A835XKF2_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XKF2_9CHLO) HSP 1 Score: 166 bits (419), Expect = 1.200e-46 Identity = 99/259 (38.22%), Postives = 146/259 (56.37%), Query Frame = 1 Query: 7 RSRALCIGINYGKT-ANALQGCVNDANNLSK-LLDGSGAVAMEDITVLCEPTGEELCNA------ISHLADLSVSQNLNYVFISYSGHGTQVKDVTGDEADGRDEAICPSDFNIKGVITDDLLKSLLQRFNIATTVCFLADACHSGSLLDMNRQYTSKICTL-SGDAELPGKIAYISGCRDPQTSADAYDQDS-RTYQGVMTCARIKSQKINPATRTDVFKLVAEMRKLLRAQGYAQIPVLTASFDI--PRAFSFIPYK 747 R+RAL G+NY ++ALQGC+ND N+ L++ GA + D+ G +A +S LA L+ ++L +V+I YSGHGT+V D + DE DG DE + PSD+ GVI DD L L ++FN T V + D+CHSG+++D+ + + CT+ + ++ + I +SGC D QTSADAY+ D R Y G MT + + A D F LV MR LR Q + Q P L +SF + P + + +P + Sbjct: 28 RARALLFGLNYAHMPSSALQGCINDVQNMKAYLMNRLGAELVCDVATDDTAAGRTATSAMGMTRKLSELAVLTYKEDLEFVWIHYSGHGTRVVDRSKDELDGYDECLVPSDYTTAGVIPDDYLAKLFEQFNPKTRVIAVFDSCHSGTVVDLKYSWEGRACTMENSNSRVRAPIMALSGCLDSQTSADAYNVDGQRQYTGAMTSVMLHVLQTTGAAADDAFLLVDAMRAHLREQNFTQWPKLCSSFSLVLPSSRAMLPRR 286
BLAST of jgi.p|Trimin1|174751 vs. uniprot
Match: A0A6C0CTM3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CTM3_9ZZZZ) HSP 1 Score: 162 bits (411), Expect = 6.660e-46 Identity = 95/245 (38.78%), Postives = 142/245 (57.96%), Query Frame = 1 Query: 7 RSRALCIGINYGKTANA-LQGCVNDANNLSKLLDGSGAV----AMEDITVLCEPTGEELCNAISHLADLSVSQNLNYVFISYSGHGTQVKDVTGDEADGRDEAICPSDFNIKGVITDDLLKSLLQRFNIATTVCFLADACHSGSLLDMNRQYTSKICTLSGDAE--LPGKIAYISGCRDPQTSADAYD-QDSRTYQGVMTCARIKSQKINPATRTDVFKLVAEMRKLLRAQGYAQIPVLTASFDI 717 +S+A+ GINY T A L+GCVND N++K L A D + TG + N+I LA S NL+ V+I YSGHG + D GDE+DG+DE I P+D+N +GVITDDL+K +L+ FN T V + D CHSG++ D+ +Y +A+ I +SGC D QTSADAY+ + R + G MT + + + ++ F++ +++K+LRA+ + Q+P LT+SF + Sbjct: 2 KSKAILFGINYNNTPQARLRGCVNDVRNMAKFLKEKAKYDVVKAYTDDDDFNKVTGSYIINSIYKLAIDSHRHNLDRVWIHYSGHGCAINDRDGDESDGKDECIVPADYNYRGVITDDLIKRVLRYFNKRTQVTCIFDCCHSGTIGDLKYEYRDPHVYREENAKSKCQSNIMLLSGCMDHQTSADAYNVRGRREFSGAMTSCLLVAME----NSSNAFEVFDDLKKMLRAKRFTQVPRLTSSFKV 242
BLAST of jgi.p|Trimin1|174751 vs. uniprot
Match: A0A6C0BGG3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0BGG3_9ZZZZ) HSP 1 Score: 159 bits (403), Expect = 1.240e-44 Identity = 90/252 (35.71%), Postives = 145/252 (57.54%), Query Frame = 1 Query: 7 RSRALCIGINYGKTANA-LQGCVNDANNLSKLLDGSGAVAMEDITVLCEPTGEELCNAISHLADL---SVSQNLNYVFISYSGHGTQVKDVTGDEADGRDEAICPSDFNIKGVITDDLLKSLLQRFNIATTVCFLADACHSGSLLDMNRQYTS-KICTLSGD-AELPGKIAYISGCRDPQTSADAYDQ-DSRTYQGVMTCARIKSQKINPATRTDVFKLVAEMRKLLRAQGYAQIPVLTASFDIPRAFSFIP 741 R RAL G+NY + +A L GC+ND N+SK L+ + + ++ T + I +L +L S S+ L++V++ YSGHG+ + D +GDE DG+DE + PSD+ G+I+DD + +L FN T V + D CHSG++ D+ + K C + +P +I +SGC D QTSADA++ Y G +T + K P + DVF+++A +R LR +G++Q+P L +++++ R FIP Sbjct: 2 RGRALLFGLNYATSPDAKLNGCINDVINISKYLNTNLGIPVKVCTDDGDTYSTSAMGIIRNLYELALQSYSEKLDFVWVHYSGHGSYIVDKSGDEKDGKDECLVPSDYAKSGMISDDFINTLFGYFNPNTRVICVFDCCHSGTIGDVKYSWEGPKTCAVENILCSIPARIITLSGCFDNQTSADAHNVLGDNKYVGALTSCLLMVLKEQPQVKNDVFQMIANLRTKLRERGFSQLPKLCSTYNLARDKVFIP 253
BLAST of jgi.p|Trimin1|174751 vs. uniprot
Match: A0A6C0BRY5_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0BRY5_9ZZZZ) HSP 1 Score: 148 bits (373), Expect = 3.240e-40 Identity = 95/253 (37.55%), Postives = 139/253 (54.94%), Query Frame = 1 Query: 10 SRALCIGINYGKTANA-LQGCVNDANNLSKLLDGSGAVAMEDITVLCEPTGE------ELCNAISHLADLSVSQNLNYVFISYSGHGTQVKDVTGDEADGRDEAICPSDFNIKGVITDDLLKSLLQRFNIATTVCFLADACHSGSLLDMNRQY---TSKICTLSGDAELPGKIAYISGCRDPQTSADAYD-QDSRTYQGVMTCARIKSQKINPATRTDVFKLVAEMRKLLRAQGYAQIPVLTASFDIPRAFSF 735 S+A+ GINY T +A L+GCVND NN++K L + + + V + + E + N + LA S L V+I +SGHG + D GDE DG+DE I PSDF GVITDDL+K +L+ FN T V + D CHSG++ D+ Y + ++ ++ K+ ISGC D QTSADAY+ Q R + G MT + + + +F ++ ++R LLR +G+ Q P L +S+ I SF Sbjct: 2 SKAVLFGINYIHTPSAQLRGCVNDVNNMAKYL--TDEEKYDVVKVYTDESNEYKTRANSIINILYKLAIDSHRLELKKVWIHFSGHGCYIPDHDGDEKDGKDECIVPSDFRQSGVITDDLIKRVLRYFNKNTKVTCVFDCCHSGTVCDLKYIYKDNNKEPVEVNTFSKCEAKVCMISGCMDNQTSADAYNVQGKREFSGAMTSCLL----LTLSQDKKIFNVMYKLRSLLRQKGFTQYPQLASSYVITDTESF 248
BLAST of jgi.p|Trimin1|174751 vs. uniprot
Match: A0A7D3UU47_9VIRU (Caspase n=1 Tax=Fadolivirus 1 TaxID=2740746 RepID=A0A7D3UU47_9VIRU) HSP 1 Score: 150 bits (379), Expect = 7.760e-40 Identity = 91/247 (36.84%), Postives = 135/247 (54.66%), Query Frame = 1 Query: 16 ALCIGINYGKTANALQGCVNDANNLSKLLDGSGAVAMEDITVLCE------PTGEELCNAISHLADLSVSQNLNYVFISYSGHGTQVKDVTGDEADGRDEAICPSDFNIKGVITDDLL-KSLLQRFNIATTVCFLADACHSGSLLDMNRQYTSKICTLSGDAELPGKIAYISGCRDPQTSADAYDQDSRTYQGVMTCARIKSQKINPATRTDVFKLVAEMRKLLRAQGYAQIP--VLTASFDIPRAF 729 A+ IGINY T + L GC+NDAN+L L E+I +L + PT + + N+ + L + ++ ++ SYSGHG+ V D DE DGRDE +CP D++ G+ITDD + +L+ + T+ L DACHSG++ D+ YT+ + + + + ISGCRD QTSADAY Y+G MT + + + N + + L+A+MR LL Y Q+P LT S D+ R F Sbjct: 14 AVLIGINYFGTGSQLNGCINDANHLKLFLLEKCGYLPENIMMLTDDGLGVRPTKQNIINSFATLVSKATNEQFTELWFSYSGHGSYVTDYNSDENDGRDEVLCPVDYDTAGMITDDFIYANLVNKLPATATLFALTDACHSGTMFDLPFLYTNSLINNNKNTGHVANVMSISGCRDDQTSADAYIGSK--YEGAMTWSFLNALS-NSSYNIKLNDLLAKMRTLL-LNNYTQVPQLALTKSLDLDRYF 256 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174751 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5054 ID=mRNA_5054|Name=jgi.p|Trimin1|174751|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=750bp|location=Sequence derived from alignment at Contig_117:209339..210088- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAGTAGATCAAGAGCGCTTTGCATCGGAATCAATTATGGCAAGACTGCback to top protein sequence of jgi.p|Trimin1|174751 >Trimin1|174751|e_gw1.117.108.1 ID=Trimin1|174751|e_gw1.117.108.1|Name=jgi.p|Trimin1|174751|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=250bp MSRSRALCIGINYGKTANALQGCVNDANNLSKLLDGSGAVAMEDITVLCEback to top mRNA from alignment at Contig_117:209339..210088- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5054 ID=mRNA_5054|Name=jgi.p|Trimin1|174751|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=750bp|location=Sequence derived from alignment at Contig_117:209339..210088- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_117:209339..210088- >mRNA_5054 ID=mRNA_5054|Name=jgi.p|Trimin1|174751|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=750bp|location=Sequence derived from alignment at Contig_117:209339..210088- (Tribonema minus UTEX_B_3156 )back to top |