mRNA_5016 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|150368
Unique NamemRNA_5016
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|150368 vs. uniprot
Match: A0A835ZE20_9STRA (Putative serine/threonine kinase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE20_9STRA)

HSP 1 Score: 520 bits (1339), Expect = 1.210e-186
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 1
Query:    1 YTVIRMLGTGSSGEVVLARETDNPDKLFAIKIILLKYIHRNHLSTQIKREISVMKSLHHDNIVRLYRVLKGGSRLYLVCEYISGGDLFDKISGLTSLPEPLACKYFIQIVKAIQYCHDNGITHRDLKPENCMVTVDDEIKVTDFGLSNITSQKYGDMFFTVCGTPHYASPEVLSRVQYHGPLSDIWSIGVLLYVMLLGYLPFDDDLHEALRIKIKHAKFVIPKNSMSPEAEDLIRRIIKADPAKRPSLAEILAHDW 768
            YTVIRMLGTGSSGEVVLARETDNPDKLFAIKIILLKYIHRNHLSTQIKREISVMKSLHHDNIVRLYRVLKGGSRLYLVCEYISGGDLFDKISGLTSLPEPLACKYFIQIVKAIQYCHDNGITHRDLKPENCMVTVDDEIKVTDFGLSNITSQKYGDMFFTVCGTPHYASPEVLSRVQYHGPLSDIWSIGVLLYVMLLGYLPFDDDLHEALRIKIKHAKFVIPKNSMSPEAEDLIRRIIKADPAKRPSLAEILAHDW
Sbjct:    1 YTVIRMLGTGSSGEVVLARETDNPDKLFAIKIILLKYIHRNHLSTQIKREISVMKSLHHDNIVRLYRVLKGGSRLYLVCEYISGGDLFDKISGLTSLPEPLACKYFIQIVKAIQYCHDNGITHRDLKPENCMVTVDDEIKVTDFGLSNITSQKYGDMFFTVCGTPHYASPEVLSRVQYHGPLSDIWSIGVLLYVMLLGYLPFDDDLHEALRIKIKHAKFVIPKNSMSPEAEDLIRRIIKADPAKRPSLAEILAHDW 256          
BLAST of jgi.p|Trimin1|150368 vs. uniprot
Match: A0A836CFT3_9STRA (Kinase-like domain-containing protein n=4 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFT3_9STRA)

HSP 1 Score: 444 bits (1143), Expect = 1.510e-156
Identity = 215/252 (85.32%), Postives = 235/252 (93.25%), Query Frame = 1
Query:   16 MLGTGSSGEVVLARETDNPDKLFAIKIILLKYIHRNHLSTQIKREISVMKSLHHDNIVRLYRVLKGGSRLYLVCEYISGGDLFDKISGLTSLPEPLACKYFIQIVKAIQYCHDNGITHRDLKPENCMVTVDDE-IKVTDFGLSNITSQKYGDMFFTVCGTPHYASPEVLSRVQYHGPLSDIWSIGVLLYVMLLGYLPFDDDLHEALRIKIKHAKFVIPKNSMSPEAEDLIRRIIKADPAKRPSLAEILAHDW 768
            MLG GSSGEVVL  ET++P+ LFAIKII LKYIHRNHLSTQIKREISVMKSLHHDNIVRLYRVLKGG++LYLVCEY+SGGDL+DKI+ L SLPEPLACKYF+QIVKAIQ+CHDNGITHRDLKPENCMVT D E IKVTDFGLSNITSQKYGDMFFTVCGTPHYASPEVLSR+QY+GPLSDIWS+G+LLYVML+GYLPFDDDLHEALRIKIKHAKFVIP++++S EAEDLIR II  DP KRPSL +ILAH W
Sbjct:    1 MLGNGSSGEVVLVHETEHPEHLFAIKIISLKYIHRNHLSTQIKREISVMKSLHHDNIVRLYRVLKGGTKLYLVCEYVSGGDLYDKIANLPSLPEPLACKYFVQIVKAIQHCHDNGITHRDLKPENCMVTDDGEKIKVTDFGLSNITSQKYGDMFFTVCGTPHYASPEVLSRIQYNGPLSDIWSLGILLYVMLMGYLPFDDDLHEALRIKIKHAKFVIPRDTVSVEAEDLIRSIIIVDPTKRPSLEQILAHKW 252          
BLAST of jgi.p|Trimin1|150368 vs. uniprot
Match: A0A835Z4H3_9STRA (Putative serine/threonine protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4H3_9STRA)

HSP 1 Score: 422 bits (1084), Expect = 3.580e-147
Identity = 202/256 (78.91%), Postives = 230/256 (89.84%), Query Frame = 1
Query:    1 YTVIRMLGTGSSGEVVLARETDNPDKLFAIKIILLKYIHRNHLSTQIKREISVMKSLHHDNIVRLYRVLKGGSRLYLVCEYISGGDLFDKISGLTSLPEPLACKYFIQIVKAIQYCHDNGITHRDLKPENCMVTVDDEIKVTDFGLSNITSQKYGDMFFTVCGTPHYASPEVLSRVQYHGPLSDIWSIGVLLYVMLLGYLPFDDDLHEALRIKIKHAKFVIPKNSMSPEAEDLIRRIIKADPAKRPSLAEILAHDW 768
            YTV+RMLG+GSSGEVVLA E D+ D LFAIKII LK+IHRNHLSTQIKREIS MKSLHH+NIVRL+RVL GG++LYLVCEY+SGGDL+DKI+ + SLPE LA KYF QIV+AIQ+CH+NGITHRDLKPENCMVT D +IKV DFGLSNITSQ+YGDMFFTVCGTPHYASPEVLSRV Y+GP SDIWS+GVLLYVM+LGYLPFDDDLHEALR+KIKHAKF +P +++S EAEDLIRRI+  DP KRP+L +IL H W
Sbjct:   11 YTVVRMLGSGSSGEVVLAHENDDRDTLFAIKIISLKHIHRNHLSTQIKREISAMKSLHHENIVRLFRVLNGGTKLYLVCEYVSGGDLYDKIAAMKSLPETLARKYFKQIVRAIQHCHENGITHRDLKPENCMVTEDGDIKVADFGLSNITSQQYGDMFFTVCGTPHYASPEVLSRVTYNGPQSDIWSMGVLLYVMVLGYLPFDDDLHEALRVKIKHAKFGLPAHTISSEAEDLIRRILVIDPTKRPTLIQILEHSW 266          
BLAST of jgi.p|Trimin1|150368 vs. uniprot
Match: A0A835Z4Q1_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4Q1_9STRA)

HSP 1 Score: 330 bits (847), Expect = 2.400e-111
Identity = 161/256 (62.89%), Postives = 203/256 (79.30%), Query Frame = 1
Query:    1 YTVIRMLGTGSSGEVVLARETDNPDKLFAIKIILLKYIHRNHLSTQIKREISVMKSLHHDNIVRLYRVLKGGSRLYLVCEYISGGDLFDKISGLTSLPEPLACKYFIQIVKAIQYCHDNGITHRDLKPENCMVTVDDEIKVTDFGLSNITSQKYGDMFFTVCGTPHYASPEVLSRVQYHGPLSDIWSIGVLLYVMLLGYLPFDDDLHEALRIKIKHAKFVIPKNSMSPEAEDLIRRIIKADPAKRPSLAEILAHDW 768
            Y V + LG GSSGEVVLA +  +   L+A+KII ++YIH NHLS Q+KRE   MKSL H NIV L+RVLKGGS+L+LVCEY+ GGDLFDKI   + LPE  A +YF +IV AI +CH +GI+HRD+KPENC++T DD IKVTDFGLSN+ S+ + DMF+TVCGTP+YA+PEVLSR++Y GP++DIWS+GVLLYVML+G LPFD++  E L  KIKHA+F IP++S+S EAEDLI  I+ ADP  RP+L  +LAH W
Sbjct:    8 YKVTKTLGIGSSGEVVLAEDCRD-GSLYAVKIIPIQYIHTNHLSNQLKREKQAMKSLQHPNIVSLHRVLKGGSKLHLVCEYVPGGDLFDKIISQSRLPEEDAKRYFGEIVSAIAHCHASGISHRDIKPENCLMTHDDHIKVTDFGLSNVKSEYHEDMFYTVCGTPNYAAPEVLSRIKYKGPVADIWSLGVLLYVMLIGMLPFDEEAPEHLWSKIKHAEFSIPEDSISEEAEDLINMILVADPVSRPNLDAVLAHPW 262          
BLAST of jgi.p|Trimin1|150368 vs. uniprot
Match: A0A3R7M5C7_TRYRA (Serine/threonine protein kinase n=2 Tax=Trypanosoma rangeli TaxID=5698 RepID=A0A3R7M5C7_TRYRA)

HSP 1 Score: 229 bits (584), Expect = 2.180e-71
Identity = 119/259 (45.95%), Postives = 168/259 (64.86%), Query Frame = 1
Query:    1 YTVIRMLGTGSSGEVVLARETDNPDKLFAIKIILLKYIHRNHLSTQIKREISVMKSLHHDNIVRLYRVLKGGSRLYLVCEYISGGDLFDKISGLTSLPEPLACKYFIQIVKAIQYCHDNGITHRDLKPENCMVTVDDEIKVTDFGLSNITSQKY---GDMFFTVCGTPHYASPEVLSRVQYHGPLSDIWSIGVLLYVMLLGYLPFDDDLHEALRIKIKHAKFVIPKNSMSPEAEDLIRRIIKADPAKRPSLAEILAHDW 768
            Y + + LG+G+  +V LAR+ +   K +AIKI+    + R  +  Q+KREISVMK LH  NI+ L  V++  + +YLV E ++GG+LFDKI+      EP A +YF Q++  I YCH  GI HRDLKPEN ++  +D +K++DFGLSNI S      G M  TVCGTP+Y +PEVL    Y G  +D+WS GV+L+VML GYLPFDDD   AL  KI+  ++ + ++  SP+  DLI +++  DP KR ++ EI+ H W
Sbjct:   10 YELGKTLGSGNFSKVKLARDVET-GKEWAIKIMDKGQLVRERMEEQLKREISVMKMLHQPNIIELREVMQTTNHIYLVLELVAGGELFDKIAEAKRFDEPTARRYFHQLIAGIHYCHSQGIAHRDLKPENLLLDANDTLKISDFGLSNIHSGNAAGRGTMLQTVCGTPNYVAPEVLKEQGYDGVKADVWSCGVVLFVMLAGYLPFDDDNVNALFTKIERGEYRMARH-FSPDVRDLISKMLVVDPNKRVTVEEIMRHPW 266          
BLAST of jgi.p|Trimin1|150368 vs. uniprot
Match: A0A422PZ50_9TRYP (Serine/threonine protein kinase n=1 Tax=Trypanosoma conorhini TaxID=83891 RepID=A0A422PZ50_9TRYP)

HSP 1 Score: 228 bits (582), Expect = 4.370e-71
Identity = 116/259 (44.79%), Postives = 170/259 (65.64%), Query Frame = 1
Query:    1 YTVIRMLGTGSSGEVVLARETDNPDKLFAIKIILLKYIHRNHLSTQIKREISVMKSLHHDNIVRLYRVLKGGSRLYLVCEYISGGDLFDKISGLTSLPEPLACKYFIQIVKAIQYCHDNGITHRDLKPENCMVTVDDEIKVTDFGLSNIT---SQKYGDMFFTVCGTPHYASPEVLSRVQYHGPLSDIWSIGVLLYVMLLGYLPFDDDLHEALRIKIKHAKFVIPKNSMSPEAEDLIRRIIKADPAKRPSLAEILAHDW 768
            Y + + LG+G+  +V LAR+ +   K +AIKII  + + R  +  Q+KREI+VMK LH  NI+ L  V++  + +YLV E ++GG+LFD+I+      EP A +YF Q++  I YCH  GI HRDLKPEN ++  +D +K++DFGLSN+    +   G M  TVCGTP+Y +PEVL    Y G  +D+WS GV+L+VML GYLPFDD+   AL  KI+  ++ + ++  SP+A DLI +++  DP KR ++ EI+ H W
Sbjct:   10 YELGKTLGSGNFSKVKLARDVET-GKEWAIKIIDKEQLVRERMEEQLKREIAVMKMLHQPNIIELREVMQTTNHIYLVLELVTGGELFDRIAAAKRFDEPTARRYFHQLISGIHYCHAQGIAHRDLKPENLLLDANDTLKISDFGLSNLNRGNASGRGTMLQTVCGTPNYVAPEVLKERGYDGVKADVWSCGVVLFVMLAGYLPFDDENVNALFTKIERGEYRMARH-FSPDARDLISKMLAVDPNKRVTVEEIMQHPW 266          
BLAST of jgi.p|Trimin1|150368 vs. uniprot
Match: A0A836CIG8_9STRA (Putative serine/threonine kinase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIG8_9STRA)

HSP 1 Score: 228 bits (580), Expect = 5.850e-71
Identity = 112/256 (43.75%), Postives = 170/256 (66.41%), Query Frame = 1
Query:    1 YTVIRMLGTGSSGEVVLARETDNPDKLFAIKIILLKYIHRNHLSTQIKREISVMKSLHHDNIVRLYRVLKGGSRLYLVCEYISGGDLFDKISGLTSLPEPLACKYFIQIVKAIQYCHDNGITHRDLKPENCMVTVDDEIKVTDFGLSNITSQKYGDMFFTVCGTPHYASPEVLSRVQYHGPLSDIWSIGVLLYVMLLGYLPFDDDLHEALRIKIKHAKFVIPKNSMSPEAEDLIRRIIKADPAKRPSLAEILAHDW 768
            Y ++++LGTG+SG+V L    D+  K FA+K++ L  +H+    T++KRE+ +MK L ++ IV+LYRVLKG + +YL+CEY++GGDLFDKI+    L E  A +YF QIV+ + YCH   I+HRD+KPEN M+T  D++K+ DFGLS I +Q    +F T CGT +Y +PE+L++  Y     DIWS+G++LYVML G  P+D D  E     I   +F  P + +   A++LI ++++  P  RP++ ++ AH W
Sbjct:   21 YRILKLLGTGASGQVFLV---DDSGKQFAMKVVRLPDMHKTKTYTRLKREVEIMKRLDNERIVKLYRVLKGSTCIYLICEYVAGGDLFDKIALNNQLTETEARRYFRQIVEGMVYCHSQNISHRDIKPENIMITSCDDVKIADFGLSRIKTQTTV-VFDTFCGTLNYVAPELLAKRPYDSKC-DIWSLGIMLYVMLSGRFPYDSDDDEETAHMILDDQFTFPASIVDGNAKNLISQMLQKRPESRPTMIQVAAHQW 271          
BLAST of jgi.p|Trimin1|150368 vs. uniprot
Match: G0U028_TRYVY (Putative serine/threonine kinase n=1 Tax=Trypanosoma vivax (strain Y486) TaxID=1055687 RepID=G0U028_TRYVY)

HSP 1 Score: 226 bits (577), Expect = 3.180e-70
Identity = 117/259 (45.17%), Postives = 168/259 (64.86%), Query Frame = 1
Query:    1 YTVIRMLGTGSSGEVVLARETDNPDKLFAIKIILLKYIHRNHLSTQIKREISVMKSLHHDNIVRLYRVLKGGSRLYLVCEYISGGDLFDKISGLTSLPEPLACKYFIQIVKAIQYCHDNGITHRDLKPENCMVTVDDEIKVTDFGLS---NITSQKYGDMFFTVCGTPHYASPEVLSRVQYHGPLSDIWSIGVLLYVMLLGYLPFDDDLHEALRIKIKHAKFVIPKNSMSPEAEDLIRRIIKADPAKRPSLAEILAHDW 768
            Y + + LG+G+  +V + R+ +   K +AIKII  + + R  +  Q+KREI+VMK LH  NI+ L  V++  + +YLV E ++GG+LFDKI+      EP A  YF Q++  I YCH  GI HRDLKPEN ++  +D +K++DFGLS   N  S   G M  TVCGTP+Y +PEVL    Y G ++D+WS GV+L+VML GYLPFDD+   AL  KI+  ++ + ++  SP A DLI R++  DP +R ++AEI+ H W
Sbjct:   10 YELSKTLGSGNFSKVKVGRDVET-GKEWAIKIIDKEQLVRERMEEQLKREIAVMKVLHQPNIIELREVMQTTNHIYLVLELVTGGELFDKIATARRFDEPTARHYFHQLIAGIHYCHSQGIAHRDLKPENLLLDANDTLKISDFGLSHLHNCNSGGQGTMLQTVCGTPNYVAPEVLKERGYDGVMADVWSCGVVLFVMLAGYLPFDDENVNALFTKIERGEYRMARH-FSPGARDLISRMLTVDPRRRITVAEIVHHPW 266          
BLAST of jgi.p|Trimin1|150368 vs. uniprot
Match: Q4DDT6_TRYCC (Serine/threonine protein kinase, putative n=7 Tax=Trypanosoma cruzi TaxID=5693 RepID=Q4DDT6_TRYCC)

HSP 1 Score: 226 bits (576), Expect = 4.930e-70
Identity = 117/259 (45.17%), Postives = 169/259 (65.25%), Query Frame = 1
Query:    1 YTVIRMLGTGSSGEVVLARETDNPDKLFAIKIILLKYIHRNHLSTQIKREISVMKSLHHDNIVRLYRVLKGGSRLYLVCEYISGGDLFDKISGLTSLPEPLACKYFIQIVKAIQYCHDNGITHRDLKPENCMVTVDDEIKVTDFGLSNI---TSQKYGDMFFTVCGTPHYASPEVLSRVQYHGPLSDIWSIGVLLYVMLLGYLPFDDDLHEALRIKIKHAKFVIPKNSMSPEAEDLIRRIIKADPAKRPSLAEILAHDW 768
            Y + + LG+G+  +V L R+ +   K +AIKII  + + R  +  Q+KREI+VMK LH  NI+ L  V++  + +YLV E ++GG+LFDKI+      EP A  YF Q++  I YCH +GI HRDLKPEN ++  +D +K++DFGLSN+    S   G M  TVCGTP+Y +PEVL    Y G  +DIWS GV+L+VML GYLPFDD+   AL  KI+  ++ + ++  S E+ DLI +++  DP+KR ++ EI+ H W
Sbjct:   10 YELGKTLGSGNFSKVKLGRDIET-GKEWAIKIIDKEQLVRERMEEQLKREIAVMKMLHQPNIIELREVMQTTNHIYLVLELVTGGELFDKIAAAKRFDEPTARHYFHQLIAGIHYCHTHGIAHRDLKPENLLLDANDTLKISDFGLSNLHYGNSPGKGTMLQTVCGTPNYVAPEVLKERGYDGVKADIWSCGVVLFVMLAGYLPFDDENVNALFTKIERGEYRMARH-FSAESRDLISKMLAVDPSKRATVEEIMHHPW 266          
BLAST of jgi.p|Trimin1|150368 vs. uniprot
Match: S9W5D7_9TRYP (Protein kinase domain/Protein tyrosine kinase/Kinase-like, putative n=1 Tax=Angomonas deanei TaxID=59799 RepID=S9W5D7_9TRYP)

HSP 1 Score: 225 bits (573), Expect = 8.300e-70
Identity = 113/259 (43.63%), Postives = 172/259 (66.41%), Query Frame = 1
Query:    1 YTVIRMLGTGSSGEVVLARETDNPDKLFAIKIILLKYIHRNHLSTQIKREISVMKSLHHDNIVRLYRVLKGGSRLYLVCEYISGGDLFDKISGLTSLPEPLACKYFIQIVKAIQYCHDNGITHRDLKPENCMVTVDDEIKVTDFGLSNI---TSQKYGDMFFTVCGTPHYASPEVLSRVQYHGPLSDIWSIGVLLYVMLLGYLPFDDDLHEALRIKIKHAKFVIPKNSMSPEAEDLIRRIIKADPAKRPSLAEILAHDW 768
            Y + + LG+G+  +V LA++T+   K +AIK+I  + + R  +  Q+KREI+VMK L   NI+ L+ V++  + +YLV E ++GG+LF+KI+      E +A  YF Q++  + YCH  GI HRDLKPEN ++  +D +K++DFGLSN+     Q  G M  TVCGTP+Y +PEVL    Y G ++D+WS GV+L+VML GYLPFDD+   AL  KI+  +F + ++  S +A DLI  +++ DPA+R +L +++AH W
Sbjct:   10 YELGKTLGSGNFSKVKLAKDTET-GKQWAIKVIDKEQLVRERMEEQLKREIAVMKMLRQPNIIELHEVMQTSNHIYLVLELVTGGELFEKIAKQKRFTEDVARNYFHQLIAGVHYCHRQGIAHRDLKPENLLLDGNDTLKISDFGLSNLQRSNGQGGGTMLQTVCGTPNYVAPEVLKEQGYDGLMADVWSCGVVLFVMLAGYLPFDDENVNALFTKIERGEFRMARH-FSEDARDLIENMLRVDPARRFTLQDVIAHRW 266          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150368 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZE20_9STRA1.210e-186100.00Putative serine/threonine kinase (Fragment) n=1 Ta... [more]
A0A836CFT3_9STRA1.510e-15685.32Kinase-like domain-containing protein n=4 Tax=Trib... [more]
A0A835Z4H3_9STRA3.580e-14778.91Putative serine/threonine protein kinase n=1 Tax=T... [more]
A0A835Z4Q1_9STRA2.400e-11162.89Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A3R7M5C7_TRYRA2.180e-7145.95Serine/threonine protein kinase n=2 Tax=Trypanosom... [more]
A0A422PZ50_9TRYP4.370e-7144.79Serine/threonine protein kinase n=1 Tax=Trypanosom... [more]
A0A836CIG8_9STRA5.850e-7143.75Putative serine/threonine kinase-like protein n=1 ... [more]
G0U028_TRYVY3.180e-7045.17Putative serine/threonine kinase n=1 Tax=Trypanoso... [more]
Q4DDT6_TRYCC4.930e-7045.17Serine/threonine protein kinase, putative n=7 Tax=... [more]
S9W5D7_9TRYP8.300e-7043.63Protein kinase domain/Protein tyrosine kinase/Kina... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_117contigContig_117:74811..75578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|150368|gw1.117.89.1
DescriptionBelongs to the protein kinase superfamily
COG categoryT
Max annot lvl5653|Kinetoplastida
EggNOG OGsKOG0583@1|root,KOG0583@2759|Eukaryota,3XTBQ@5653|Kinetoplastida
Evalue1.71e-72
Seed ortholog5664.LmjF.07.0900
Hectar predicted targeting categoryother localisation
TranscriptId150690
TrackFilteredModels1
ProteinId150368
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150368gene_5016Tribonema minus UTEX_B_3156 geneContig_117 74811..75578 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5016_1exon_5016_1Tribonema minus UTEX_B_3156 exonContig_117 74811..75578 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5016CDS_5016Tribonema minus UTEX_B_3156 CDSContig_117 74811..75578 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150368Trimin1|150368|gw1.117.89.1Tribonema minus UTEX_B_3156 polypeptideContig_117 74811..75578 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5016 ID=mRNA_5016|Name=jgi.p|Trimin1|150368|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=768bp|location=Sequence derived from alignment at Contig_117:74811..75578+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TATACGGTGATAAGAATGCTGGGGACCGGATCGTCAGGGGAAGTGGTGTT
GGCGCGTGAGACAGACAACCCTGATAAGCTGTTTGCGATCAAGATCATAT
TGCTCAAGTACATCCACCGCAACCACCTGTCAACGCAGATCAAGAGAGAG
ATCAGTGTGATGAAGTCGCTGCACCATGATAACATCGTCCGCTTGTACAG
GGTCCTGAAGGGCGGCAGCAGGCTTTACCTCGTTTGTGAATACATATCGG
GGGGAGACCTCTTCGACAAAATTTCCGGCCTCACATCACTGCCAGAGCCT
CTAGCCTGCAAGTACTTCATTCAGATTGTCAAGGCCATACAGTATTGCCA
TGACAACGGCATCACTCACCGCGACTTGAAGCCTGAGAATTGCATGGTGA
CAGTTGATGATGAGATCAAGGTCACCGATTTCGGTCTGTCCAACATTACC
AGTCAAAAATACGGTGACATGTTCTTCACTGTTTGCGGGACCCCACACTA
CGCGAGCCCTGAAGTGTTGTCAAGGGTCCAGTATCATGGACCGCTAAGTG
ATATATGGAGCATCGGAGTCCTGCTGTACGTAATGTTGCTGGGCTACCTA
CCATTCGATGACGACTTGCATGAAGCTCTGCGCATCAAGATCAAGCACGC
AAAGTTTGTGATCCCCAAAAATTCGATGTCTCCAGAGGCGGAGGATCTGA
TTAGGAGAATCATCAAAGCCGACCCTGCCAAGAGACCATCGCTCGCAGAA
ATACTGGCGCACGACTGG
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protein sequence of jgi.p|Trimin1|150368

>Trimin1|150368|gw1.117.89.1 ID=Trimin1|150368|gw1.117.89.1|Name=jgi.p|Trimin1|150368|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=256bp
YTVIRMLGTGSSGEVVLARETDNPDKLFAIKIILLKYIHRNHLSTQIKRE
ISVMKSLHHDNIVRLYRVLKGGSRLYLVCEYISGGDLFDKISGLTSLPEP
LACKYFIQIVKAIQYCHDNGITHRDLKPENCMVTVDDEIKVTDFGLSNIT
SQKYGDMFFTVCGTPHYASPEVLSRVQYHGPLSDIWSIGVLLYVMLLGYL
PFDDDLHEALRIKIKHAKFVIPKNSMSPEAEDLIRRIIKADPAKRPSLAE
ILAHDW
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mRNA from alignment at Contig_117:74811..75578+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5016 ID=mRNA_5016|Name=jgi.p|Trimin1|150368|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=768bp|location=Sequence derived from alignment at Contig_117:74811..75578+ (Tribonema minus UTEX_B_3156 )
TATACGGTGATAAGAATGCTGGGGACCGGATCGTCAGGGGAAGTGGTGTT GGCGCGTGAGACAGACAACCCTGATAAGCTGTTTGCGATCAAGATCATAT TGCTCAAGTACATCCACCGCAACCACCTGTCAACGCAGATCAAGAGAGAG ATCAGTGTGATGAAGTCGCTGCACCATGATAACATCGTCCGCTTGTACAG GGTCCTGAAGGGCGGCAGCAGGCTTTACCTCGTTTGTGAATACATATCGG GGGGAGACCTCTTCGACAAAATTTCCGGCCTCACATCACTGCCAGAGCCT CTAGCCTGCAAGTACTTCATTCAGATTGTCAAGGCCATACAGTATTGCCA TGACAACGGCATCACTCACCGCGACTTGAAGCCTGAGAATTGCATGGTGA CAGTTGATGATGAGATCAAGGTCACCGATTTCGGTCTGTCCAACATTACC AGTCAAAAATACGGTGACATGTTCTTCACTGTTTGCGGGACCCCACACTA CGCGAGCCCTGAAGTGTTGTCAAGGGTCCAGTATCATGGACCGCTAAGTG ATATATGGAGCATCGGAGTCCTGCTGTACGTAATGTTGCTGGGCTACCTA CCATTCGATGACGACTTGCATGAAGCTCTGCGCATCAAGATCAAGCACGC AAAGTTTGTGATCCCCAAAAATTCGATGTCTCCAGAGGCGGAGGATCTGA TTAGGAGAATCATCAAAGCCGACCCTGCCAAGAGACCATCGCTCGCAGAA ATACTGGCGCACGACTGG
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Coding sequence (CDS) from alignment at Contig_117:74811..75578+

>mRNA_5016 ID=mRNA_5016|Name=jgi.p|Trimin1|150368|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=768bp|location=Sequence derived from alignment at Contig_117:74811..75578+ (Tribonema minus UTEX_B_3156 )
TATACGGTGATAAGAATGCTGGGGACCGGATCGTCAGGGGAAGTGGTGTT
GGCGCGTGAGACAGACAACCCTGATAAGCTGTTTGCGATCAAGATCATAT
TGCTCAAGTACATCCACCGCAACCACCTGTCAACGCAGATCAAGAGAGAG
ATCAGTGTGATGAAGTCGCTGCACCATGATAACATCGTCCGCTTGTACAG
GGTCCTGAAGGGCGGCAGCAGGCTTTACCTCGTTTGTGAATACATATCGG
GGGGAGACCTCTTCGACAAAATTTCCGGCCTCACATCACTGCCAGAGCCT
CTAGCCTGCAAGTACTTCATTCAGATTGTCAAGGCCATACAGTATTGCCA
TGACAACGGCATCACTCACCGCGACTTGAAGCCTGAGAATTGCATGGTGA
CAGTTGATGATGAGATCAAGGTCACCGATTTCGGTCTGTCCAACATTACC
AGTCAAAAATACGGTGACATGTTCTTCACTGTTTGCGGGACCCCACACTA
CGCGAGCCCTGAAGTGTTGTCAAGGGTCCAGTATCATGGACCGCTAAGTG
ATATATGGAGCATCGGAGTCCTGCTGTACGTAATGTTGCTGGGCTACCTA
CCATTCGATGACGACTTGCATGAAGCTCTGCGCATCAAGATCAAGCACGC
AAAGTTTGTGATCCCCAAAAATTCGATGTCTCCAGAGGCGGAGGATCTGA
TTAGGAGAATCATCAAAGCCGACCCTGCCAAGAGACCATCGCTCGCAGAA
ATACTGGCGCACGACTGG
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