mRNA_4942 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|129752
Unique NamemRNA_4942
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|129752 vs. uniprot
Match: A0A835Z0E3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0E3_9STRA)

HSP 1 Score: 156 bits (394), Expect = 8.470e-47
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 
Query:    1 GHLDVLQWLKEEDLLTEKDLIVACRDAAEGGYXXXXXXXXXXXXXXXXXIAWHAARSGNLELLKWVLAQGRELHKGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDAGLWSLKSGRVDVAQWVTA 384
            GHLDVLQWLKEEDLLTEKDLIVACRDAAEGGYXXXXXXXXXXXXXXXXXIAWHAARSGNLELLKWVLAQGRELHKGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDAGLWSLKSGRVDVAQWVTA
Sbjct:    1 GHLDVLQWLKEEDLLTEKDLIVACRDAAEGGYXXXXXXXXXXXXXXXXXIAWHAARSGNLELLKWVLAQGRELHKGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDAGLWSLKSGRVDVAQWVTA 128
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|129752 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z0E3_9STRA8.470e-47100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_23contigContig_23:693581..693964 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|129752|gw1.23.11.1
Hectar predicted targeting categoryother localisation
TranscriptId130074
TrackFilteredModels1
ProteinId129752
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129752gene_4942Tribonema minus UTEX_B_3156 geneContig_23 693581..693964 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4942_1exon_4942_1Tribonema minus UTEX_B_3156 exonContig_23 693581..693964 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4942CDS_4942Tribonema minus UTEX_B_3156 CDSContig_23 693581..693964 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129752Trimin1|129752|gw1.23.11.1Tribonema minus UTEX_B_3156 polypeptideContig_23 693581..693964 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4942 ID=mRNA_4942|Name=jgi.p|Trimin1|129752|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=384bp|location=Sequence derived from alignment at Contig_23:693581..693964+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGGCACCTTGACGTGCTCCAATGGCTCAAGGAGGAGGATTTGCTCACAGA
AAAGGATCTGATCGTCGCATGCCGTGATGCCGCCGAGGGCGGTTATTTAG
ATGTGCTCAAGTTTCTCAATGAAGAGGGGTTCGTATGGGAGGAGGACATC
GCATGGCATGCAGCTCGCAGTGGAAACTTAGAGTTGCTGAAGTGGGTCCT
GGCGCAAGGGCGCGAGCTTCACAAGGGGTGCACATGGCTCTCGTCGTTTA
CGCAGTATGCGGTAATGAGCGGACATCTGGCGATGATGCAGTGGGTGGTA
GAAGAGGGGTGCGATTTGCACGAGGATGCAGGTCTGTGGTCTCTTAAAAG
TGGACGTGTTGATGTAGCGCAGTGGGTGACAGCC
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protein sequence of jgi.p|Trimin1|129752

>Trimin1|129752|gw1.23.11.1 ID=Trimin1|129752|gw1.23.11.1|Name=jgi.p|Trimin1|129752|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=128bp
GHLDVLQWLKEEDLLTEKDLIVACRDAAEGGYLDVLKFLNEEGFVWEEDI
AWHAARSGNLELLKWVLAQGRELHKGCTWLSSFTQYAVMSGHLAMMQWVV
EEGCDLHEDAGLWSLKSGRVDVAQWVTA
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mRNA from alignment at Contig_23:693581..693964+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4942 ID=mRNA_4942|Name=jgi.p|Trimin1|129752|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=384bp|location=Sequence derived from alignment at Contig_23:693581..693964+ (Tribonema minus UTEX_B_3156 )
GGGCACCTTGACGTGCTCCAATGGCTCAAGGAGGAGGATTTGCTCACAGA
AAAGGATCTGATCGTCGCATGCCGTGATGCCGCCGAGGGCGGTTATTTAG
ATGTGCTCAAGTTTCTCAATGAAGAGGGGTTCGTATGGGAGGAGGACATC
GCATGGCATGCAGCTCGCAGTGGAAACTTAGAGTTGCTGAAGTGGGTCCT
GGCGCAAGGGCGCGAGCTTCACAAGGGGTGCACATGGCTCTCGTCGTTTA
CGCAGTATGCGGTAATGAGCGGACATCTGGCGATGATGCAGTGGGTGGTA
GAAGAGGGGTGCGATTTGCACGAGGATGCAGGTCTGTGGTCTCTTAAAAG
TGGACGTGTTGATGTAGCGCAGTGGGTGACAGCC
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Coding sequence (CDS) from alignment at Contig_23:693581..693964+

>mRNA_4942 ID=mRNA_4942|Name=jgi.p|Trimin1|129752|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=384bp|location=Sequence derived from alignment at Contig_23:693581..693964+ (Tribonema minus UTEX_B_3156 )
GGGCACCTTGACGTGCTCCAATGGCTCAAGGAGGAGGATTTGCTCACAGA
AAAGGATCTGATCGTCGCATGCCGTGATGCCGCCGAGGGCGGTTATTTAG
ATGTGCTCAAGTTTCTCAATGAAGAGGGGTTCGTATGGGAGGAGGACATC
GCATGGCATGCAGCTCGCAGTGGAAACTTAGAGTTGCTGAAGTGGGTCCT
GGCGCAAGGGCGCGAGCTTCACAAGGGGTGCACATGGCTCTCGTCGTTTA
CGCAGTATGCGGTAATGAGCGGACATCTGGCGATGATGCAGTGGGTGGTA
GAAGAGGGGTGCGATTTGCACGAGGATGCAGGTCTGTGGTCTCTTAAAAG
TGGACGTGTTGATGTAGCGCAGTGGGTGACAGCC
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