mRNA_4936 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|348379 vs. uniprot
Match: A0A835Z0S9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0S9_9STRA) HSP 1 Score: 671 bits (1731), Expect = 6.990e-242 Identity = 348/348 (100.00%), Postives = 348/348 (100.00%), Query Frame = 1 Query: 1 MSIRRQSTVGSLQDEREVHRMEKLLGKFKDKTPPALVNLFKLLAPFIKAFCVVLNVVGPYIIKLYSALFAIYKRLPKNVVAMLLGLAFTFFGGLFAVTFAAIEAFRELGGSDVYTALEDLKIDFDIVQTANKKDDEVDDNKNGIKDVKEIPSHQLVSRKLLLVLRSVDPDRVNHAMAGLYKGFTGVLVVLRFRFARVIALAVSIADHMRPLASRILAPPLAFLIPKEYHKWISTMINVLCRTVATTIAWKIQRVLSTIQSAIKGGLMFARALVRFLHENRIISFDDESTYLDEILGWALAAGGIYVQIHMNWNLPLLVDLFLWPLHVSERVLIWSVTWMDASPSEKGM 1044 MSIRRQSTVGSLQDEREVHRMEKLLGKFKDKTPPALVNLFKLLAPFIKAFCVVLNVVGPYIIKLYSALFAIYKRLPKNVVAMLLGLAFTFFGGLFAVTFAAIEAFRELGGSDVYTALEDLKIDFDIVQTANKKDDEVDDNKNGIKDVKEIPSHQLVSRKLLLVLRSVDPDRVNHAMAGLYKGFTGVLVVLRFRFARVIALAVSIADHMRPLASRILAPPLAFLIPKEYHKWISTMINVLCRTVATTIAWKIQRVLSTIQSAIKGGLMFARALVRFLHENRIISFDDESTYLDEILGWALAAGGIYVQIHMNWNLPLLVDLFLWPLHVSERVLIWSVTWMDASPSEKGM Sbjct: 1 MSIRRQSTVGSLQDEREVHRMEKLLGKFKDKTPPALVNLFKLLAPFIKAFCVVLNVVGPYIIKLYSALFAIYKRLPKNVVAMLLGLAFTFFGGLFAVTFAAIEAFRELGGSDVYTALEDLKIDFDIVQTANKKDDEVDDNKNGIKDVKEIPSHQLVSRKLLLVLRSVDPDRVNHAMAGLYKGFTGVLVVLRFRFARVIALAVSIADHMRPLASRILAPPLAFLIPKEYHKWISTMINVLCRTVATTIAWKIQRVLSTIQSAIKGGLMFARALVRFLHENRIISFDDESTYLDEILGWALAAGGIYVQIHMNWNLPLLVDLFLWPLHVSERVLIWSVTWMDASPSEKGM 348
BLAST of jgi.p|Trimin1|348379 vs. uniprot
Match: D7FP22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP22_ECTSI) HSP 1 Score: 334 bits (857), Expect = 1.570e-108 Identity = 165/331 (49.85%), Postives = 233/331 (70.39%), Query Frame = 1 Query: 28 GSLQDEREVHRMEKLLGKFKDKTPPALVNLFKLLAPFIKAFCVVLNVVGPYIIKLYSALFAIYKRLPKNVVAMLLGLAFTFFGGLFAVTFAAIEAFRELGGSDVYTALEDLKIDFDIVQTANKKDDEVDDNKNGIKDVKEIPSHQLVSRKLLLVLRSVDPDRVNHAMAGLYKGFTGVLVVLRFRFARVIALAVSIADHMRPLASRILAPPLAFLIPKEYHKWISTMINVLCRTVATTIAWKIQRVLSTIQSAIKGGLMFARALVRFLHENRIISFDDESTYLDEILGWALAAGGIYVQIHMNWNLPLLVDLFLWPLHVSERVLIWSVTWMD 1020 GS+Q E R+E ++ K K+PP L N + APF+ + N+VGP +++ Y+ L+ +YK LP NV+ M+ GL FFGG F VT AAIEAF GG V + DLK D + A+K+DD+ DD+ +GI DVK+I +L++RK L LR ++PDR +A+ G+++G+ GVLVVL+FRFA+V+ALAVSI +++RP+ ++I P LAF+IP+EYH+WI+ MIN C+ VA T+AW IQR++ST+QSAIKGGL+F+R+L+ F+ E + D + ++LDE+LGW LAA G Y Q +NW+LP VDLFLWP ++ E L WSVTWMD Sbjct: 55 GSIQAFNEDRRVEDMILKVAGKSPPWLANFLRAFAPFVTLTFTIANIVGPVVVRFYALLYKVYKILPVNVLGMIYGLVMCFFGGFFHVTIAAIEAFNMTGGEKVMLCVHDLKQDIKALHYASKEDDKRDDDHDGIPDVKQISPEKLLTRKTALALRVINPDRATNAITGIWQGYMGVLVVLKFRFAKVVALAVSIGNNLRPIVAKIFGPALAFVIPREYHQWIAPMINYFCKFVAMTVAWWIQRLISTVQSAIKGGLLFSRSLMYFVSEVTPLKLDPDHSFLDEVLGWTLAACGAYFQTSINWDLPWAVDLFLWPAYLLETFLKWSVTWMD 385
BLAST of jgi.p|Trimin1|348379 vs. uniprot
Match: A0A7S1REG4_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1REG4_ALECA) HSP 1 Score: 249 bits (635), Expect = 4.890e-76 Identity = 129/317 (40.69%), Postives = 196/317 (61.83%), Query Frame = 1 Query: 91 KTPPALVNLFKLLAPFIKAFCVVLNVVGPYIIKLYSALFAIYKRLPKNVVAMLLGLAFTFFGGLFAVTFAAIEAFRELGGSDVYTALEDLKIDFDIVQTANKKDDEVDDNKNGIKDVKEIPSHQLVSRKLLLVLRSVDPDRVNHAMAGLYKGFTGVLVVLRFRFARVIALAVSIADHMRPLASRILAPPLAFLIPKEYHKWISTMINVLCRTVATTIAWKIQRVLSTIQSAIKGGLMFARALVRFLHENRIISFDDESTYLDEILGWALAAGGIYVQIHMNWNLPLLVDLFLWPLHVSERVLIWSVTWMDASPSEKG 1041 ++PP AP I ++GP +++L A Y+ LP V L GL +FFGG + V+ AA EAFR +GGS VY L+DL V A+ D+E D + +G+ DV+++ +LV+RK LV++++DP+ V A GL+ + GVL VL+F+FAR IALA SIA ++RP +++L P L + P +Y KWIS +++LC+ VA +AWK++++ +T+QS GGL+ +RAL+ + E R++S D+ T LDE++GW + A GIYVQ+ +P ++ WPL V ERVL W+V W+DA+ G Sbjct: 7 QSPPWAAQYLAKAAPAIGVLGAGCELLGPALVRLGGAACEAYRLLPGTVARGLGGLGMSFFGGRYTVSIAAWEAFRSMGGSQVYVCLQDLGEQGRAVWVAHVADEEEDADADGVADVRQLEGGRLVARKAALVMKTIDPETVARAAGGLWTAYMGVLTVLKFQFARTIALAESIAQNLRPAMAKVLGPTLVAVTPPDYRKWISPAVSLLCKLVAGAVAWKVKQLAATVQSGFCGGLIASRALLELMRERRLVSVADDETLLDEVVGWCVGACGIYVQLFRGGPVPAILSPLFWPLDVLERVLQWNVAWVDAAQKPSG 323
BLAST of jgi.p|Trimin1|348379 vs. uniprot
Match: A0A7S2RLK5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLK5_9STRA) HSP 1 Score: 244 bits (623), Expect = 1.700e-73 Identity = 123/323 (38.08%), Postives = 201/323 (62.23%), Query Frame = 1 Query: 43 EREVHRMEKLLGKFKDKTPPALVNLFKLLAPFIKAFCVVLNVVGPYIIKLYSALFAIYKRLPKNVVAMLLGLAFTFFGGLFAVTFAAIEAFRELGGSDVYTALEDLKIDFDIVQTANKKDDEVDDNKNGIKDVKEIPSHQLVSRKLLLVLRSVDPDRVNHAMAGLYKGFTGVLVVLRFRFARVIALAVSIADHMRPLASRILAPPLAFLIPKEYHKWISTMINVLCRTVATTIAWKIQRVLSTIQSAIKGGLMFARALVRFLHENRIISFDDESTYLDEILGWALAAGGIYVQIHMNWNLPLLVDLFLWPLHVSERVLIWSVT 1011 E+E R KL+ + PPA V K++AP + A V L++ P I+ +A+ ++ +P ++ + G FFGG++ T AA+EA+++ GG Y DL I+F V + +DD D++ +GI DV +I +L RK + L + DPD++N A+ G+Y G+ GV+ VL+ +FA+ IAL +I D + A R+ P L LIP++YH+WI +++ +C+++A +IAW +QRV+S SAI+GGL+ +R ++ F++ II F+D +YLDEI+GW+LAA G Y Q M +++P +L LWP V+E ++W+V+ Sbjct: 62 EKEAERWTKLISSASESAPPAAVPYLKMMAPVLSAVLVGLHMALPLILSAAAAVDKFFQVVPAQLLVAVFGALICFFGGMYPATIAAMEAWQQAGGRRAYENARDLYIEFKRVMHKSAEDDLKDEDGDGIADVDQISGKELFMRKAHIALTTCDPDKLNGAIQGIYTGWVGVIAVLKIQFAKTIALGSAIGDFLYSPALRVATPVLVHLIPEDYHRWIPSLVLYVCKSIALSIAWYVQRVISAFHSAIRGGLLCSRGVLNFMNSRGIIDFNDTESYLDEIVGWSLAAAGFYFQFMMGFSMPFPFNLLLWPFGVAEWYIVWTVS 384
BLAST of jgi.p|Trimin1|348379 vs. uniprot
Match: A0A813D688_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813D688_POLGL) HSP 1 Score: 231 bits (588), Expect = 1.610e-68 Identity = 127/333 (38.14%), Postives = 200/333 (60.06%), Query Frame = 1 Query: 31 SLQDEREVHRMEKLLGKFKD-KTPPALVNLFKLLAPFIKAFCVVLNVVGPYIIKLYSALFAIYKRLPKNVVAMLLGLAFTFFGGLFAVTFAAIEAFRELGGSDVYTALEDLKIDFDIVQTANKKDDEVDDNKNGIKDVKEIPSHQLVSRKLLLVLRSVDPDRVNHAMAGLYKGFTGVLVVLRFRFARVIALAVSIADHMRPLASRILAPPLAFLIPKEYHKWISTMINVLCRTVATTIAWKIQRVLSTIQSAIKGGLMFARALVRFLHENRIISFDD-ESTYLDEILGWALAAGGIYVQIHMNWNLPLLVDLFLWPLHVSERVLIWSVTWMDA 1023 S+ D +E R+E + + PP L + L P A V V GP++ + Y+ L+ IYK LP+N L GL FFGG +A FAA EAF+ GG + L+DL+ D V A + +DE + + S+ L LV+R+VDP R++ A++G++ G+ GV++ L++ FAR +A A SI D++RP+A+++LAP + P EY +W+ IN+ C+ VA +AWK+Q+V+S++QS+I GGL+ +R + +L + +++ + E T +DEILGW LA+ G+Y QI ++PLL+ LWP+ V+E L WSVTW+ + Sbjct: 44 SVLDRKEAARLEHFMVSLATGQEPPWLTPYLRKLGPAFAAANQVAAVAGPFLYQFYAGLYKIYKALPQNAACGLWGLGACFFGGRYAAFFAAAEAFKTAGGDQMLVCLQDLQADLVSVLQAQEDEDEAS-----------LSGEKKASKTLALVMRTVDPGRLSMALSGVWAGYMGVVLALKYNFARTLAFAHSIGDNLRPVAAKLLAPTALSVTPPEYRQWVGPAINLGCKCVAMAVAWKLQQVVSSVQSSISGGLLASRCFLPYLMSSGLLASRNLEDTMIDEILGWGLASAGMYFQIIKGGSVPLLLAPILWPMGVAESWLQWSVTWLGS 365
BLAST of jgi.p|Trimin1|348379 vs. uniprot
Match: A0A7S2VT12_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2VT12_9DINO) HSP 1 Score: 224 bits (572), Expect = 2.670e-66 Identity = 127/321 (39.56%), Postives = 189/321 (58.88%), Query Frame = 1 Query: 28 GSLQDEREVHRMEKLLGKFKDKTPPALVNLFKLLAPFIKAFCVVLNVVGPYIIKLYSALFAIYKRLPKNVVAMLLGLAFTFFGGLFAVTFAAIEAFRELGGSDVYTALEDLKIDFDIVQTANKKDDEVDDNKNGIKDVKEIPSHQLVSRKLLLVLRSVDPDRVNHAMAGLYKGFTGVLVVLRFRFARVIALAVSIADHMRPLASRILAPPLAFLIPKEYHKWISTMINVLCRTVATTIAWKIQRVLSTIQSAIKGGLMFARALVRFLHENRIISFDDESTYLDEILGWALAAGGIYVQIHMNWNLPLLVDLFLWPLHVSER 990 GSL D RE R+EKL D PP K AP + ++ V+GP + Y++L+ +Y+ LP N + L GLA FFGG + ++ AA+EAF+ GG + L L+ VQ A+++DD+ D + +G+ DV+++ + QL SRK+ LVLRS+DP V+ A+ GL+ G+ GVL L+ R+AR ALA SI D +RP AS++ P + + P +Y W+ N+ C+ + TIAW++Q +ST+QS + GGL +RA + + + DD T DE+ GWALAA GIY Q + LP ++ LWP + ER Sbjct: 39 GSLVDRREAERLEKLTVGLSDAAPPWAAPYIKQAAPAVGLAGAIVEVMGPIVYNFYASLYRVYQTLPTNAASCLWGLALCFFGGRYPLSLAAVEAFKLAGGDSMMMHLVTLRDSAVKVQQASQEDDKHDADGDGVADVRQMGARQLFSRKMALVLRSIDPGVVSEAVGGLWSGYLGVLAALKLRYARTAALAHSIGDAVRPAASKLFGPSVLAVTPPDYRNWVGPAFNLACKVLGLTIAWRLQHAISTVQSGLTGGLQASRAALALMGR----ASDD--TMADEVAGWALAATGIYYQF-LGGGLPAVLVPVLWPAGLLER 352
BLAST of jgi.p|Trimin1|348379 vs. uniprot
Match: A0A6T8HJ76_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8HJ76_HEMAN) HSP 1 Score: 224 bits (570), Expect = 3.640e-66 Identity = 127/328 (38.72%), Postives = 192/328 (58.54%), Query Frame = 1 Query: 46 REVHRMEKLLGKFKDK--TPPALVNLFKLLAPFIKAFCVVLNVVGPYIIKLYSALFAIYKRLPKNVVAMLLGLAFTFFGGLFAVTFAAIEAFRELGGSDVYTALEDLKIDFDIVQTANKKDDEVDDNKNGIKDVKEIPSHQ-LVSRKLLLVLRSVDPDRVNHAMAGLYKGFTGVLVVLRFRFARVIALAVSIADHMRPLASRILAPPLAFLIPKEYHKWISTMINVLCRTVATTIAWKIQRVLSTIQSAIKGGLMFARALVRFLHENRIISFDDESTYLDEILGWALAAGGIYVQIHMNWNLPLLVDLFLWPLHVSERVLIWSVTWMD 1020 RE R+E++ ++ PP +L L P + ++ P ++ +A AI+ LPK + L GL FFGG + VT AA+EAFR GG V + D+ D V+ AN D++ DD+ +G DV ++ S + L+SRK+ LVLR+VDPDRV A+ GL + F GVL L+ +FAR +ALAVSI+D++R A +L P LA LIP EYH W+S +I++ C+ V +AW + R+++T +++ GGLM ARA + ++ + E + LDE GW L G Y Q+ ++LP +++ L P+ + E L W+VTW D Sbjct: 13 REAARVERICNALAEREGVPPWTKSLLVQLGPLLTTLLAFIDASTPVVMSAIAAAVAIWNTLPKQAITALYGLVLCFFGGHYTVTLAAVEAFRVSGGERVTQCIRDIWTDITNVRIANAADNKKDDDHDGKLDVDQLSSDKALLSRKIGLVLRTVDPDRVIQALGGLAQAFAGVLATLKVQFARTVALAVSISDNLRKPAGVLLTPVLAALIPPEYHHWVSPIISIACKVVGMWVAWLLARIIATCHASMIGGLMAARAAMGLANQMGWVKVTVEDSMLDEAAGWTLCVIGAYFQLSSGFSLPFPLNVVLLPVSMVEWFLTWAVTWFD 340
BLAST of jgi.p|Trimin1|348379 vs. uniprot
Match: A0A7S1AZY3_NOCSC (Hypothetical protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AZY3_NOCSC) HSP 1 Score: 218 bits (554), Expect = 1.720e-63 Identity = 120/303 (39.60%), Postives = 176/303 (58.09%), Query Frame = 1 Query: 49 EVHRMEKLLGKFKDKTPPALVNLFKLLAPFIKAFCVVLNVVGPYIIKLYSALFAIYKRLPKNVVAMLLGLAFTFFGGLFAVTFAAIEAFRELGGSDVYTALEDLKIDFDIVQTANKKDDEVDDNKNGIKDVKEIPSHQLVSRKLLLVLRSVDPDRVNHAMAGLYKGFTGVLVVLRFRFARVIALAVSIADHMRPLASRILAPPLAFLIPKEYHKWISTMINVLCRTVATTIAWKIQRVLSTIQSAIKGGLMFARALVRFLHENRIISFDDESTYLDEILGWALAAGGIYVQIHMNWNLPLLVD 957 E R+ K++ +K PP+L + A + VVL + P ++ IY++LP+++V+ + G F GG F AA EAF + G + A+ L + I+ +KKDD+VD + +GIKDV +I +L++RK LLV+R D++N A+ LY GF V L+ +FAR I+L VSI + RP+A +L PPL L+PKEYH WI +I+ +C+ VA ++AW IQR+LS SAI+G LM RAL+R +E S ++ T LDE GW LAA G Q++ + LP VD Sbjct: 62 EEKRISKMITAASEKAPPSLTKYIQAAAHVLAWAWVVLAALLPIMVLAIEKAVEIYRKLPQDIVSAIAGFLMCFTGGTFPTVIAAAEAFTQTGWKESQEAIGFLWDELHIIAEESKKDDDVDADGDGIKDVNQITGSELITRKTLLVMRKTHADKINRALGSLYVGFLSVAATLKVQFARTISLGVSIGNVARPVAETVLVPPLTHLVPKEYHHWIRPVIDYICKAVAVSVAWWIQRILSAYHSAIRGALMCTRALLRIANEKNWYSTTEDKTMLDEYAGWVLAAFGFMCQMYFGFALPFPVD 364
BLAST of jgi.p|Trimin1|348379 vs. uniprot
Match: A0A813FNH9_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FNH9_POLGL) HSP 1 Score: 210 bits (535), Expect = 6.630e-61 Identity = 112/319 (35.11%), Postives = 188/319 (58.93%), Query Frame = 1 Query: 58 RMEKLLGKFKDKTPPALVNLFKLLAPFIKAFCVVLNVVGPYIIKLYSALFAIYKRLPKNVVAMLLGLAFTFFGGLFAVTFAAIEAFRELGGSDVYTALEDLKIDFDIVQTANKKDDEVDDNKNGIKDVKEIPSHQLVSRKLLLVLRSVDPDRVNHAMAGLYKGFTGVLVVLRFRFARVIALAVSIADHMRPLASRILAPPLAFLIPKEYHKWISTMINVLCRTVATTIAWKIQRVLSTIQSAIKGGLMFARALVRFLHENRIISFDDESTYLDEILGWALAAGGIYVQIHMNWNLPLLVDLFLWPLHVSERVLIWSVTW 1014 R+ KL+ + +K P L + AP++ V + PY+I+ + +LP+ ++ +G FFGG+F T AA+EA++ GG + + +L +F VQ A+KKDD+ D +K+G DV E+ QLV RK+ + + +V+P+R++ A+ GLY G+ GVL +L+ +FA+ + L I + AS+ P + ++P+EY KW+ + + +A + AW IQRV+S I S+I+GGLMF + LV +LHE + + + TY+DE +GW +A G Q ++LP L ++FLWPL + E ++++SV + Sbjct: 28 RLVKLIEEVGEKAPANLRPHIRTAAPYLATVWVYFTMALPYVIQGIQITQELLAKLPEKILWAFVGFLVCFFGGVFPATIAAVEAWQLCGGKEALVHVAELWNEFQKVQDASKKDDDADADKDGKADVSEMTPQQLVQRKIAVAMMTVEPERISTAVGGLYIGWVGVLAILKIQFAKTVTLGEIIGGAIYKPASKF-EPMIETMVPQEYSKWVPVGLRWTIKLMAISTAWMIQRVISAIHSSIRGGLMFGKYLVDYLHETGYLKAETKDTYIDEAIGWGVAFLGFLTQCAFGFHLPFLFNIFLWPLQLVEAIVVYSVAY 345
BLAST of jgi.p|Trimin1|348379 vs. uniprot
Match: A0A1Q9EFK4_SYMMI (Uncharacterized protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9EFK4_SYMMI) HSP 1 Score: 211 bits (537), Expect = 5.630e-60 Identity = 129/342 (37.72%), Postives = 193/342 (56.43%), Query Frame = 1 Query: 16 QSTVGSLQDEREVHRMEKL-LGKFKDKTPPALVNLFKLLAPFIKAFCVVLNVVGPYIIKLYSALFAIYKRLPKNVVAMLLGLAFTFFGGLFAVTFAAIEAFRELGGSDVYTALEDLKIDFDIVQTANKKDDEVDDNKNGIKDVKEIPSHQLVSRKLLLVLRSVDPDRVNHAMAGLYKGFTGVLVVLRFRFARVIALAVSIADHMRPLASRILAPPLAFLIPKEYHKWISTMINVLCRTVATTIAWKIQRVLSTIQSAIKGGLMFARA----LVRFLHENRIISFDD-ESTYLDEILGWALAAGGIYVQIHMNWNLPLLVDLFLWPLHVSERVLIWSVTWMDA 1023 +S GS +E R+E+L L + TP L + P ++ V++V GP + YS LF IYK LP++ L GL FFGG + FAA E+F+ GG + +L+DL++D V AN + K++ K+ LVL +VDP R++ A+ L+ G+ G+++ L+++FAR +A A SI DH+RPLA+++LAP + P EY +WI IN+ C+ +AT AWK+QR+LS++Q+ I GGL+ R+ L+ LH ++S E + +DE++GW+LAA GIY QI PL FL PL + E L WSV W+ A Sbjct: 127 ESGPGSYTGRKEKMRVERLALSTYAKGTPWLSHCLDGIGRPALEMAGDVISVAGPPVYSFYSGLFTIYKALPRDAATCLWGLGQCFFGGHYTAFFAAAESFKSAGGDQMLASLQDLQVDAVAVLQANANME------------KDLGKPTSAWEKVQLVLCTVDPQRISDALGSLWTGYMGLVLALKYKFARTVAFAHSIGDHLRPLAAKVLAPAALAVTPPEYRQWIEPSINLGCKAIATAAAWKLQRILSSVQTGIAGGLLVGRSAWSLLLPALHRRGVVSKQSVEDSMVDELIGWSLAASGIYYQIVQGGGAPL----FLLPLTIVETWLQWSVAWLAA 452 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348379 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4936 ID=mRNA_4936|Name=jgi.p|Trimin1|348379|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1290bp|location=Sequence derived from alignment at Contig_23:649352..653926- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAGCATAAGGAGGCAGTCCACCGTAGGCAGCCTGCAGGATGAGCGAGAback to top protein sequence of jgi.p|Trimin1|348379 >Trimin1|348379|estExt_Genemark1.C_Ctg_230074 ID=Trimin1|348379|estExt_Genemark1.C_Ctg_230074|Name=jgi.p|Trimin1|348379|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=349bp MSIRRQSTVGSLQDEREVHRMEKLLGKFKDKTPPALVNLFKLLAPFIKAFback to top mRNA from alignment at Contig_23:649352..653926- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_4936 ID=mRNA_4936|Name=jgi.p|Trimin1|348379|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4575bp|location=Sequence derived from alignment at Contig_23:649352..653926- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_23:649352..653926- >mRNA_4936 ID=mRNA_4936|Name=jgi.p|Trimin1|348379|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1047bp|location=Sequence derived from alignment at Contig_23:649352..653926- (Tribonema minus UTEX_B_3156 )back to top |