mRNA_4923 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|163045 vs. uniprot
Match: A0A835Z9S8_9STRA (DNA-binding protein HU n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9S8_9STRA) HSP 1 Score: 169 bits (428), Expect = 4.780e-53 Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 Query: 1 MKKADFVASISAKSGLSKTQTDAAISAFMDTVMEAVADGKKVSLVGFGTFESRERAARQGRNPQTGEALSIPASKAPAFSAAKAFKDRVKEAR 279 MKKADFVASISAKSGLSKTQTDAAISAFMDTVMEAVADGKKVSLVGFGTFESRERAARQGRNPQTGEALSIPASKAPAFSAAKAFKDRVKEAR Sbjct: 1 MKKADFVASISAKSGLSKTQTDAAISAFMDTVMEAVADGKKVSLVGFGTFESRERAARQGRNPQTGEALSIPASKAPAFSAAKAFKDRVKEAR 93
BLAST of jgi.p|Trimin1|163045 vs. uniprot
Match: A0A3C0P0A0_9FIRM (HU family DNA-binding protein n=1 Tax=Lachnospiraceae bacterium TaxID=1898203 RepID=A0A3C0P0A0_9FIRM) HSP 1 Score: 109 bits (273), Expect = 1.870e-29 Identity = 58/90 (64.44%), Postives = 68/90 (75.56%), Query Frame = 1 Query: 1 MKKADFVASISAKSGLSKTQTDAAISAFMDTVMEAVADGKKVSLVGFGTFESRERAARQGRNPQTGEALSIPASKAPAFSAAKAFKDRVK 270 M K +FVA ISAK+GLSK +A++ AF+DTV EA+ G+KV LVGFGTFE ERA+RQGRNPQTGE + I ASK P F A KA KD VK Sbjct: 1 MNKTEFVAEISAKTGLSKKDAEASVKAFIDTVSEALVKGEKVQLVGFGTFEVSERASRQGRNPQTGETIEIAASKTPKFKAGKALKDAVK 90
BLAST of jgi.p|Trimin1|163045 vs. uniprot
Match: A0A1M6PI97_9FIRM (Bacterial nucleoid protein Hbs n=2 Tax=Anaerobranca TaxID=42447 RepID=A0A1M6PI97_9FIRM) HSP 1 Score: 109 bits (272), Expect = 2.660e-29 Identity = 53/90 (58.89%), Postives = 72/90 (80.00%), Query Frame = 1 Query: 1 MKKADFVASISAKSGLSKTQTDAAISAFMDTVMEAVADGKKVSLVGFGTFESRERAARQGRNPQTGEALSIPASKAPAFSAAKAFKDRVK 270 M K + + S++ KSGL+K ++ A++A ++T+M+AV+ G KV L+GFGTFE+RERAAR+GRNP TGE +SIPA+K PAF A KAFKD VK Sbjct: 1 MNKTELIQSVAEKSGLTKKDSEKAVNAVLETIMDAVSAGDKVQLIGFGTFEARERAAREGRNPSTGEVISIPATKVPAFKAGKAFKDMVK 90
BLAST of jgi.p|Trimin1|163045 vs. uniprot
Match: UPI0019F8F3CF (HU family DNA-binding protein n=1 Tax=Synechococcales cyanobacterium C42_A2020_086 TaxID=2774344 RepID=UPI0019F8F3CF) HSP 1 Score: 109 bits (272), Expect = 4.730e-29 Identity = 53/89 (59.55%), Postives = 72/89 (80.90%), Query Frame = 1 Query: 1 MKKADFVASISAKSGLSKTQTDAAISAFMDTVMEAVADGKKVSLVGFGTFESRERAARQGRNPQTGEALSIPASKAPAFSAAKAFKDRV 267 M K++ + S++AK+ +SK + DA +SA MD++MEAVA G KV+LVGFGTFE+R+R AR+GRNP TG+ L IPA++ PAFSA K FKD+V Sbjct: 1 MNKSELIDSVAAKASVSKKEADAVVSAMMDSIMEAVAGGSKVTLVGFGTFEARDRQAREGRNPSTGQPLQIPATRVPAFSAGKLFKDKV 89
BLAST of jgi.p|Trimin1|163045 vs. uniprot
Match: A0A8J7BK50_9CYAN (HU family DNA-binding protein n=3 Tax=unclassified Trichocoleus TaxID=2628910 RepID=A0A8J7BK50_9CYAN) HSP 1 Score: 107 bits (266), Expect = 2.370e-28 Identity = 53/92 (57.61%), Postives = 70/92 (76.09%), Query Frame = 1 Query: 1 MKKADFVASISAKSGLSKTQTDAAISAFMDTVMEAVADGKKVSLVGFGTFESRERAARQGRNPQTGEALSIPASKAPAFSAAKAFKDRVKEA 276 M K + V +++AK+ ++K Q DA +SA DT+ E VA G+KV+L+GFGTFE RER AR+GRNP+TGE + IPA+K PAFSA K FKD+V A Sbjct: 1 MNKGELVDAVAAKANVTKKQADAILSAVFDTIQETVASGEKVTLIGFGTFEPRERQAREGRNPKTGETMKIPATKVPAFSAGKVFKDKVSPA 92
BLAST of jgi.p|Trimin1|163045 vs. uniprot
Match: U5DQY8_9CHRO (Bacterial nucleoid DNA-binding protein n=1 Tax=Rubidibacter lacunae KORDI 51-2 TaxID=582515 RepID=U5DQY8_9CHRO) HSP 1 Score: 106 bits (264), Expect = 4.520e-28 Identity = 51/89 (57.30%), Postives = 73/89 (82.02%), Query Frame = 1 Query: 1 MKKADFVASISAKSGLSKTQTDAAISAFMDTVMEAVADGKKVSLVGFGTFESRERAARQGRNPQTGEALSIPASKAPAFSAAKAFKDRV 267 M K D + I+ K+ ++K Q DA ++A +DT+MEAV+DG+KV+LVGFG+FESRER AR+GRNP+TG+ + IPA++ PAFSA K+FK++V Sbjct: 1 MNKGDLIDQIAEKTTVTKKQADAVLTAALDTIMEAVSDGEKVTLVGFGSFESRERKAREGRNPKTGDKMEIPATRVPAFSAGKSFKEKV 89
BLAST of jgi.p|Trimin1|163045 vs. uniprot
Match: A0A355BL19_9FIRM (DNA-binding protein n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A355BL19_9FIRM) HSP 1 Score: 105 bits (263), Expect = 6.230e-28 Identity = 56/90 (62.22%), Postives = 69/90 (76.67%), Query Frame = 1 Query: 1 MKKADFVASISAKSGLSKTQTDAAISAFMDTVMEAVADGKKVSLVGFGTFESRERAARQGRNPQTGEALSIPASKAPAFSAAKAFKDRVK 270 MKKAD V+ I+ KSGL+K Q +AA+ AF+ +V EA+ G+KV LVGFGTFE+R+RAAR GRNP TGE + IPAS+ PAF A K KD VK Sbjct: 1 MKKADLVSRIAEKSGLNKKQAEAALDAFVASVQEALQAGEKVQLVGFGTFEARDRAARTGRNPGTGEEIQIPASRVPAFKAGKVLKDAVK 90
BLAST of jgi.p|Trimin1|163045 vs. uniprot
Match: A0A355S0Z8_9CLOT (Uncharacterized protein n=1 Tax=Clostridiaceae bacterium TaxID=1898204 RepID=A0A355S0Z8_9CLOT) HSP 1 Score: 105 bits (263), Expect = 6.410e-28 Identity = 55/89 (61.80%), Postives = 67/89 (75.28%), Query Frame = 1 Query: 1 MKKADFVASISAKSGLSKTQTDAAISAFMDTVMEAVADGKKVSLVGFGTFESRERAARQGRNPQTGEALSIPASKAPAFSAAKAFKDRV 267 M KAD V SI+ KSGL+K + D A+ AF+DTV E + +GKKV LVGFGTFE R RA R+GRNP+T E ++IPASK P F A K FKD+V Sbjct: 1 MNKADLVTSIAEKSGLTKKEADKALKAFIDTVEETIEEGKKVQLVGFGTFEVRSRAERKGRNPRTMEEIAIPASKVPIFKAGKEFKDKV 89
BLAST of jgi.p|Trimin1|163045 vs. uniprot
Match: A0A1V9RC19_9LACO (DNA-binding protein HU n=4 Tax=Bacilli TaxID=91061 RepID=A0A1V9RC19_9LACO) HSP 1 Score: 105 bits (262), Expect = 8.850e-28 Identity = 54/90 (60.00%), Postives = 68/90 (75.56%), Query Frame = 1 Query: 1 MKKADFVASISAKSGLSKTQTDAAISAFMDTVMEAVADGKKVSLVGFGTFESRERAARQGRNPQTGEALSIPASKAPAFSAAKAFKDRVK 270 M + + V +IS K G +K D A++AF+DTV EA+ +G+KV L+GFGTFE RERAAR+GRNPQTGE + IPASK PAF A K+ KD VK Sbjct: 1 MNRLELVNTISRKMGATKKDADKAVTAFIDTVTEALVEGRKVQLIGFGTFEVRERAARKGRNPQTGEEIEIPASKIPAFKAGKSLKDSVK 90
BLAST of jgi.p|Trimin1|163045 vs. uniprot
Match: K1LK95_9LACT (DNA-binding protein HU n=2 Tax=Falseniella ignava TaxID=137730 RepID=K1LK95_9LACT) HSP 1 Score: 105 bits (262), Expect = 9.110e-28 Identity = 54/88 (61.36%), Postives = 67/88 (76.14%), Query Frame = 1 Query: 7 KADFVASISAKSGLSKTQTDAAISAFMDTVMEAVADGKKVSLVGFGTFESRERAARQGRNPQTGEALSIPASKAPAFSAAKAFKDRVK 270 KAD V ++AK+ L+K A + A +TVMEA+ADG+KV ++GFGTFE R+RAAR+GRNPQTGE + IPASK PAF A KA KD VK Sbjct: 4 KADLVERVAAKTNLTKKDVTATVEALFETVMEALADGEKVQVIGFGTFEVRDRAARKGRNPQTGEEIQIPASKVPAFKAGKALKDIVK 91 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163045 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4923 ID=mRNA_4923|Name=jgi.p|Trimin1|163045|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=282bp|location=Sequence derived from alignment at Contig_23:562460..562850+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAAAAAAGCTGACTTCGTGGCATCTATATCTGCCAAATCTGGTCTTTCback to top protein sequence of jgi.p|Trimin1|163045 >Trimin1|163045|e_gw1.23.202.1 ID=Trimin1|163045|e_gw1.23.202.1|Name=jgi.p|Trimin1|163045|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=94bp MKKADFVASISAKSGLSKTQTDAAISAFMDTVMEAVADGKKVSLVGFGTFback to top mRNA from alignment at Contig_23:562460..562850+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_4923 ID=mRNA_4923|Name=jgi.p|Trimin1|163045|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=391bp|location=Sequence derived from alignment at Contig_23:562460..562850+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_23:562460..562850+ >mRNA_4923 ID=mRNA_4923|Name=jgi.p|Trimin1|163045|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=282bp|location=Sequence derived from alignment at Contig_23:562460..562850+ (Tribonema minus UTEX_B_3156 )back to top |