mRNA_4923 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163045
Unique NamemRNA_4923
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|163045 vs. uniprot
Match: A0A835Z9S8_9STRA (DNA-binding protein HU n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9S8_9STRA)

HSP 1 Score: 169 bits (428), Expect = 4.780e-53
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1
Query:    1 MKKADFVASISAKSGLSKTQTDAAISAFMDTVMEAVADGKKVSLVGFGTFESRERAARQGRNPQTGEALSIPASKAPAFSAAKAFKDRVKEAR 279
            MKKADFVASISAKSGLSKTQTDAAISAFMDTVMEAVADGKKVSLVGFGTFESRERAARQGRNPQTGEALSIPASKAPAFSAAKAFKDRVKEAR
Sbjct:    1 MKKADFVASISAKSGLSKTQTDAAISAFMDTVMEAVADGKKVSLVGFGTFESRERAARQGRNPQTGEALSIPASKAPAFSAAKAFKDRVKEAR 93          
BLAST of jgi.p|Trimin1|163045 vs. uniprot
Match: A0A3C0P0A0_9FIRM (HU family DNA-binding protein n=1 Tax=Lachnospiraceae bacterium TaxID=1898203 RepID=A0A3C0P0A0_9FIRM)

HSP 1 Score: 109 bits (273), Expect = 1.870e-29
Identity = 58/90 (64.44%), Postives = 68/90 (75.56%), Query Frame = 1
Query:    1 MKKADFVASISAKSGLSKTQTDAAISAFMDTVMEAVADGKKVSLVGFGTFESRERAARQGRNPQTGEALSIPASKAPAFSAAKAFKDRVK 270
            M K +FVA ISAK+GLSK   +A++ AF+DTV EA+  G+KV LVGFGTFE  ERA+RQGRNPQTGE + I ASK P F A KA KD VK
Sbjct:    1 MNKTEFVAEISAKTGLSKKDAEASVKAFIDTVSEALVKGEKVQLVGFGTFEVSERASRQGRNPQTGETIEIAASKTPKFKAGKALKDAVK 90          
BLAST of jgi.p|Trimin1|163045 vs. uniprot
Match: A0A1M6PI97_9FIRM (Bacterial nucleoid protein Hbs n=2 Tax=Anaerobranca TaxID=42447 RepID=A0A1M6PI97_9FIRM)

HSP 1 Score: 109 bits (272), Expect = 2.660e-29
Identity = 53/90 (58.89%), Postives = 72/90 (80.00%), Query Frame = 1
Query:    1 MKKADFVASISAKSGLSKTQTDAAISAFMDTVMEAVADGKKVSLVGFGTFESRERAARQGRNPQTGEALSIPASKAPAFSAAKAFKDRVK 270
            M K + + S++ KSGL+K  ++ A++A ++T+M+AV+ G KV L+GFGTFE+RERAAR+GRNP TGE +SIPA+K PAF A KAFKD VK
Sbjct:    1 MNKTELIQSVAEKSGLTKKDSEKAVNAVLETIMDAVSAGDKVQLIGFGTFEARERAAREGRNPSTGEVISIPATKVPAFKAGKAFKDMVK 90          
BLAST of jgi.p|Trimin1|163045 vs. uniprot
Match: UPI0019F8F3CF (HU family DNA-binding protein n=1 Tax=Synechococcales cyanobacterium C42_A2020_086 TaxID=2774344 RepID=UPI0019F8F3CF)

HSP 1 Score: 109 bits (272), Expect = 4.730e-29
Identity = 53/89 (59.55%), Postives = 72/89 (80.90%), Query Frame = 1
Query:    1 MKKADFVASISAKSGLSKTQTDAAISAFMDTVMEAVADGKKVSLVGFGTFESRERAARQGRNPQTGEALSIPASKAPAFSAAKAFKDRV 267
            M K++ + S++AK+ +SK + DA +SA MD++MEAVA G KV+LVGFGTFE+R+R AR+GRNP TG+ L IPA++ PAFSA K FKD+V
Sbjct:    1 MNKSELIDSVAAKASVSKKEADAVVSAMMDSIMEAVAGGSKVTLVGFGTFEARDRQAREGRNPSTGQPLQIPATRVPAFSAGKLFKDKV 89          
BLAST of jgi.p|Trimin1|163045 vs. uniprot
Match: A0A8J7BK50_9CYAN (HU family DNA-binding protein n=3 Tax=unclassified Trichocoleus TaxID=2628910 RepID=A0A8J7BK50_9CYAN)

HSP 1 Score: 107 bits (266), Expect = 2.370e-28
Identity = 53/92 (57.61%), Postives = 70/92 (76.09%), Query Frame = 1
Query:    1 MKKADFVASISAKSGLSKTQTDAAISAFMDTVMEAVADGKKVSLVGFGTFESRERAARQGRNPQTGEALSIPASKAPAFSAAKAFKDRVKEA 276
            M K + V +++AK+ ++K Q DA +SA  DT+ E VA G+KV+L+GFGTFE RER AR+GRNP+TGE + IPA+K PAFSA K FKD+V  A
Sbjct:    1 MNKGELVDAVAAKANVTKKQADAILSAVFDTIQETVASGEKVTLIGFGTFEPRERQAREGRNPKTGETMKIPATKVPAFSAGKVFKDKVSPA 92          
BLAST of jgi.p|Trimin1|163045 vs. uniprot
Match: U5DQY8_9CHRO (Bacterial nucleoid DNA-binding protein n=1 Tax=Rubidibacter lacunae KORDI 51-2 TaxID=582515 RepID=U5DQY8_9CHRO)

HSP 1 Score: 106 bits (264), Expect = 4.520e-28
Identity = 51/89 (57.30%), Postives = 73/89 (82.02%), Query Frame = 1
Query:    1 MKKADFVASISAKSGLSKTQTDAAISAFMDTVMEAVADGKKVSLVGFGTFESRERAARQGRNPQTGEALSIPASKAPAFSAAKAFKDRV 267
            M K D +  I+ K+ ++K Q DA ++A +DT+MEAV+DG+KV+LVGFG+FESRER AR+GRNP+TG+ + IPA++ PAFSA K+FK++V
Sbjct:    1 MNKGDLIDQIAEKTTVTKKQADAVLTAALDTIMEAVSDGEKVTLVGFGSFESRERKAREGRNPKTGDKMEIPATRVPAFSAGKSFKEKV 89          
BLAST of jgi.p|Trimin1|163045 vs. uniprot
Match: A0A355BL19_9FIRM (DNA-binding protein n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A355BL19_9FIRM)

HSP 1 Score: 105 bits (263), Expect = 6.230e-28
Identity = 56/90 (62.22%), Postives = 69/90 (76.67%), Query Frame = 1
Query:    1 MKKADFVASISAKSGLSKTQTDAAISAFMDTVMEAVADGKKVSLVGFGTFESRERAARQGRNPQTGEALSIPASKAPAFSAAKAFKDRVK 270
            MKKAD V+ I+ KSGL+K Q +AA+ AF+ +V EA+  G+KV LVGFGTFE+R+RAAR GRNP TGE + IPAS+ PAF A K  KD VK
Sbjct:    1 MKKADLVSRIAEKSGLNKKQAEAALDAFVASVQEALQAGEKVQLVGFGTFEARDRAARTGRNPGTGEEIQIPASRVPAFKAGKVLKDAVK 90          
BLAST of jgi.p|Trimin1|163045 vs. uniprot
Match: A0A355S0Z8_9CLOT (Uncharacterized protein n=1 Tax=Clostridiaceae bacterium TaxID=1898204 RepID=A0A355S0Z8_9CLOT)

HSP 1 Score: 105 bits (263), Expect = 6.410e-28
Identity = 55/89 (61.80%), Postives = 67/89 (75.28%), Query Frame = 1
Query:    1 MKKADFVASISAKSGLSKTQTDAAISAFMDTVMEAVADGKKVSLVGFGTFESRERAARQGRNPQTGEALSIPASKAPAFSAAKAFKDRV 267
            M KAD V SI+ KSGL+K + D A+ AF+DTV E + +GKKV LVGFGTFE R RA R+GRNP+T E ++IPASK P F A K FKD+V
Sbjct:    1 MNKADLVTSIAEKSGLTKKEADKALKAFIDTVEETIEEGKKVQLVGFGTFEVRSRAERKGRNPRTMEEIAIPASKVPIFKAGKEFKDKV 89          
BLAST of jgi.p|Trimin1|163045 vs. uniprot
Match: A0A1V9RC19_9LACO (DNA-binding protein HU n=4 Tax=Bacilli TaxID=91061 RepID=A0A1V9RC19_9LACO)

HSP 1 Score: 105 bits (262), Expect = 8.850e-28
Identity = 54/90 (60.00%), Postives = 68/90 (75.56%), Query Frame = 1
Query:    1 MKKADFVASISAKSGLSKTQTDAAISAFMDTVMEAVADGKKVSLVGFGTFESRERAARQGRNPQTGEALSIPASKAPAFSAAKAFKDRVK 270
            M + + V +IS K G +K   D A++AF+DTV EA+ +G+KV L+GFGTFE RERAAR+GRNPQTGE + IPASK PAF A K+ KD VK
Sbjct:    1 MNRLELVNTISRKMGATKKDADKAVTAFIDTVTEALVEGRKVQLIGFGTFEVRERAARKGRNPQTGEEIEIPASKIPAFKAGKSLKDSVK 90          
BLAST of jgi.p|Trimin1|163045 vs. uniprot
Match: K1LK95_9LACT (DNA-binding protein HU n=2 Tax=Falseniella ignava TaxID=137730 RepID=K1LK95_9LACT)

HSP 1 Score: 105 bits (262), Expect = 9.110e-28
Identity = 54/88 (61.36%), Postives = 67/88 (76.14%), Query Frame = 1
Query:    7 KADFVASISAKSGLSKTQTDAAISAFMDTVMEAVADGKKVSLVGFGTFESRERAARQGRNPQTGEALSIPASKAPAFSAAKAFKDRVK 270
            KAD V  ++AK+ L+K    A + A  +TVMEA+ADG+KV ++GFGTFE R+RAAR+GRNPQTGE + IPASK PAF A KA KD VK
Sbjct:    4 KADLVERVAAKTNLTKKDVTATVEALFETVMEALADGEKVQVIGFGTFEVRDRAARKGRNPQTGEEIQIPASKVPAFKAGKALKDIVK 91          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163045 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z9S8_9STRA4.780e-53100.00DNA-binding protein HU n=1 Tax=Tribonema minus Tax... [more]
A0A3C0P0A0_9FIRM1.870e-2964.44HU family DNA-binding protein n=1 Tax=Lachnospirac... [more]
A0A1M6PI97_9FIRM2.660e-2958.89Bacterial nucleoid protein Hbs n=2 Tax=Anaerobranc... [more]
UPI0019F8F3CF4.730e-2959.55HU family DNA-binding protein n=1 Tax=Synechococca... [more]
A0A8J7BK50_9CYAN2.370e-2857.61HU family DNA-binding protein n=3 Tax=unclassified... [more]
U5DQY8_9CHRO4.520e-2857.30Bacterial nucleoid DNA-binding protein n=1 Tax=Rub... [more]
A0A355BL19_9FIRM6.230e-2862.22DNA-binding protein n=1 Tax=Firmicutes bacterium T... [more]
A0A355S0Z8_9CLOT6.410e-2861.80Uncharacterized protein n=1 Tax=Clostridiaceae bac... [more]
A0A1V9RC19_9LACO8.850e-2860.00DNA-binding protein HU n=4 Tax=Bacilli TaxID=91061... [more]
K1LK95_9LACT9.110e-2861.36DNA-binding protein HU n=2 Tax=Falseniella ignava ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_23contigContig_23:562460..562850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163045|e_gw1.23.202.1
BRITEko00000,ko03032,ko03036,ko03400
KEGG koko:K03530
Preferred namehup-2
DescriptionHistone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions
COG categoryL
Max annot lvl1117|Cyanobacteria
EggNOG OGsCOG0776@1|root,COG0776@2|Bacteria,1G6UT@1117|Cyanobacteria,1HBG8@1150|Oscillatoriales
Evalue2.9e-29
Seed ortholog402777.KB235898_gene5377
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHistone-like bacterial DNA-binding protein
Ec32 orthologEc-15_002670.1
TranscriptId163367
TrackFilteredModels1
ProteinId163045
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163045gene_4923Tribonema minus UTEX_B_3156 geneContig_23 562460..562850 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4923_1exon_4923_1Tribonema minus UTEX_B_3156 exonContig_23 562460..562571 +
exon_4923_2exon_4923_2Tribonema minus UTEX_B_3156 exonContig_23 562681..562850 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4923CDS_4923Tribonema minus UTEX_B_3156 CDSContig_23 562460..562571 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163045Trimin1|163045|e_gw1.23.202.1Tribonema minus UTEX_B_3156 polypeptideContig_23 562460..562850 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4923 ID=mRNA_4923|Name=jgi.p|Trimin1|163045|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=282bp|location=Sequence derived from alignment at Contig_23:562460..562850+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAAAAGCTGACTTCGTGGCATCTATATCTGCCAAATCTGGTCTTTC
CAAGACTCAGACAGATGCGGCCATCTCAGCATTCATGGACACAGTCATGG
AGGCTGTAGCAGATGGTAAGAAGGTCAGCTTGGTGGGCTTTGGTACCTTT
GAGTCGCGTGAGCGAGCTGCACGCCAGGGACGCAACCCTCAAACTGGCGA
GGCGCTGAGCATCCCTGCTAGCAAGGCACCAGCATTCAGTGCAGCGAAGG
CCTTCAAGGACCGTGTCAAGGAGGCACGCTAG
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protein sequence of jgi.p|Trimin1|163045

>Trimin1|163045|e_gw1.23.202.1 ID=Trimin1|163045|e_gw1.23.202.1|Name=jgi.p|Trimin1|163045|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=94bp
MKKADFVASISAKSGLSKTQTDAAISAFMDTVMEAVADGKKVSLVGFGTF
ESRERAARQGRNPQTGEALSIPASKAPAFSAAKAFKDRVKEAR*
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mRNA from alignment at Contig_23:562460..562850+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4923 ID=mRNA_4923|Name=jgi.p|Trimin1|163045|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=391bp|location=Sequence derived from alignment at Contig_23:562460..562850+ (Tribonema minus UTEX_B_3156 )
ATGAAAAAAGCTGACTTCGTGGCATCTATATCTGCCAAATCTGGTCTTTC CAAGACTCAGACAGATGCGGCCATCTCAGCATTCATGGACACAGTCATGG AGGCTGTAGCAGGTGAGCTGTACGAAATGTGGCTTTGAGGCAGCGCTCAA CTCATGAGCAACTGGCACCTACCCTGTTGCCTTTCACATGTTGACGAATA AACATGTTTGTGCCTCCGCAGATGGTAAGAAGGTCAGCTTGGTGGGCTTT GGTACCTTTGAGTCGCGTGAGCGAGCTGCACGCCAGGGACGCAACCCTCA AACTGGCGAGGCGCTGAGCATCCCTGCTAGCAAGGCACCAGCATTCAGTG CAGCGAAGGCCTTCAAGGACCGTGTCAAGGAGGCACGCTAG
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Coding sequence (CDS) from alignment at Contig_23:562460..562850+

>mRNA_4923 ID=mRNA_4923|Name=jgi.p|Trimin1|163045|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=282bp|location=Sequence derived from alignment at Contig_23:562460..562850+ (Tribonema minus UTEX_B_3156 )
ATGAAAAAAGCTGACTTCGTGGCATCTATATCTGCCAAATCTGGTCTTTC
CAAGACTCAGACAGATGCGGCCATCTCAGCATTCATGGACACAGTCATGG
AGGCTGTAGCAGATGGTAAGAAGGTCAGCTTGGTGGGCTTTGGTACCTTT
GAGTCGCGTGAGCGAGCTGCACGCCAGGGACGCAACCCTCAAACTGGCGA
GGCGCTGAGCATCCCTGCTAGCAAGGCACCAGCATTCAGTGCAGCGAAGG
CCTTCAAGGACCGTGTCAAGGAGGCACGCTAG
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