mRNA_4913 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|137719
Unique NamemRNA_4913
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|137719 vs. uniprot
Match: A0A836CH07_9STRA (AP2/ERF domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH07_9STRA)

HSP 1 Score: 115 bits (288), Expect = 6.910e-33
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 YRGVCVTREGKWRAVIYKERKQLYLGVFESEVDAAKAHDRAARQHFGDQAMVNF 162
            YRGVCVTREGKWRAVIYKERKQLYLGVFESEVDAAKAHDRAARQHFGDQAMVNF
Sbjct:    1 YRGVCVTREGKWRAVIYKERKQLYLGVFESEVDAAKAHDRAARQHFGDQAMVNF 54
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BLAST of jgi.p|Trimin1|137719 vs. uniprot
Match: A0A836CI56_9STRA (AP2/ERF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI56_9STRA)

HSP 1 Score: 109 bits (273), Expect = 8.620e-29
Identity = 51/54 (94.44%), Postives = 52/54 (96.30%), Query Frame = 1 
Query:    1 YRGVCVTREGKWRAVIYKERKQLYLGVFESEVDAAKAHDRAARQHFGDQAMVNF 162
            YRGVCVTREGKWRAVIYKERKQLYLGVFESE+DAAKAHDRAAR HFG QAMVNF
Sbjct:   31 YRGVCVTREGKWRAVIYKERKQLYLGVFESEIDAAKAHDRAARYHFGAQAMVNF 84
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BLAST of jgi.p|Trimin1|137719 vs. uniprot
Match: A0A6H5JUY3_9PHAE (AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUY3_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.510e-24
Identity = 48/54 (88.89%), Postives = 50/54 (92.59%), Query Frame = 1 
Query:    1 YRGVCVTREGKWRAVIYKERKQLYLGVFESEVDAAKAHDRAARQHFGDQAMVNF 162
            YRGVCVTREGKWRAVIYKERKQLYLGV+ESEVDAAKAHDRAAR HF D A+ NF
Sbjct:  107 YRGVCVTREGKWRAVIYKERKQLYLGVYESEVDAAKAHDRAARFHFADSAVCNF 160
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BLAST of jgi.p|Trimin1|137719 vs. uniprot
Match: D7FZ71_ECTSI (AP2/ERF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ71_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.140e-23
Identity = 46/54 (85.19%), Postives = 51/54 (94.44%), Query Frame = 1 
Query:    1 YRGVCVTREGKWRAVIYKERKQLYLGVFESEVDAAKAHDRAARQHFGDQAMVNF 162
            YRGVCVTREGKWRAVIYKERKQLYLGV+ESE++AAKAHDRAAR HF D++M NF
Sbjct:  143 YRGVCVTREGKWRAVIYKERKQLYLGVYESELEAAKAHDRAARFHFPDKSMTNF 196
[Close]
BLAST of jgi.p|Trimin1|137719 vs. uniprot
Match: A0A6H5LCQ5_9PHAE (AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCQ5_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.140e-23
Identity = 46/54 (85.19%), Postives = 51/54 (94.44%), Query Frame = 1 
Query:    1 YRGVCVTREGKWRAVIYKERKQLYLGVFESEVDAAKAHDRAARQHFGDQAMVNF 162
            YRGVCVTREGKWRAVIYKERKQLYLGV+ESE++AAKAHDRAAR HF D++M NF
Sbjct:  130 YRGVCVTREGKWRAVIYKERKQLYLGVYESELEAAKAHDRAARFHFPDKSMTNF 183
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BLAST of jgi.p|Trimin1|137719 vs. uniprot
Match: A0A6V1UZI2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UZI2_HETAK)

HSP 1 Score: 81.3 bits (199), Expect = 3.000e-17
Identity = 36/54 (66.67%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    1 YRGVCVTREGKWRAVIYKERKQLYLGVFESEVDAAKAHDRAARQHFGDQAMVNF 162
            ++GVCVTR GKWR+VIY  RKQLYLGVFE+E +AAKA+D +A ++FGD A++NF
Sbjct:  152 FKGVCVTRAGKWRSVIYVGRKQLYLGVFETEQEAAKAYDNSAVKYFGDGAVLNF 205
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BLAST of jgi.p|Trimin1|137719 vs. uniprot
Match: A0A7S3Y6J2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6J2_HETAK)

HSP 1 Score: 81.3 bits (199), Expect = 3.580e-17
Identity = 36/54 (66.67%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    1 YRGVCVTREGKWRAVIYKERKQLYLGVFESEVDAAKAHDRAARQHFGDQAMVNF 162
            ++GVCVTR GKWR+VIY  RKQLYLGVFE+E +AAKA+D +A ++FGD A++NF
Sbjct:  165 FKGVCVTRAGKWRSVIYVGRKQLYLGVFETEQEAAKAYDNSAVKYFGDGAVLNF 218
[Close]
BLAST of jgi.p|Trimin1|137719 vs. uniprot
Match: D8LFR4_ECTSI (Pathogenesis-related transcriptional factor and ERF n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFR4_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 2.090e-16
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 YRGVCVTREGKWRAVIYKERKQLYLGVFESEVDAAKAHDRAARQHFGDQAMVNF 162
            ++GVC+TR GKWRAVIY  RKQ YLGVF+SE DAA+A+D AA QHF + A +NF
Sbjct:  350 FKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNF 403
[Close]
BLAST of jgi.p|Trimin1|137719 vs. uniprot
Match: A0A6H5KQM0_9PHAE (AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQM0_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.290e-16
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 YRGVCVTREGKWRAVIYKERKQLYLGVFESEVDAAKAHDRAARQHFGDQAMVNF 162
            ++GVC+TR GKWRAVIY  RKQ YLGVF+SE DAA+A+D AA QHF + A +NF
Sbjct:  408 FKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNF 461
[Close]
BLAST of jgi.p|Trimin1|137719 vs. uniprot
Match: A0A835Z3I9_9STRA (AP2/ERF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3I9_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.760e-13
Identity = 31/53 (58.49%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 YRGVCVTREGKWRAVIYKERKQLYLGVFESEVDAAKAHDRAARQHFGDQAMVN 159
            ++GVC+TR GKWRAVIY  RKQ YLGV++SE+ AA+A++ +A +HFG  A +N
Sbjct:  240 FKGVCITRAGKWRAVIYIGRKQKYLGVYDSELQAARAYNDSALEHFGAGAKLN 292
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|137719 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CH07_9STRA6.910e-33100.00AP2/ERF domain-containing protein (Fragment) n=1 T... [more]
A0A836CI56_9STRA8.620e-2994.44AP2/ERF domain-containing protein n=1 Tax=Tribonem... [more]
A0A6H5JUY3_9PHAE1.510e-2488.89AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. ... [more]
D7FZ71_ECTSI1.140e-2385.19AP2/ERF domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5LCQ5_9PHAE1.140e-2385.19AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. ... [more]
A0A6V1UZI2_HETAK3.000e-1766.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y6J2_HETAK3.580e-1766.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D8LFR4_ECTSI2.090e-1666.67Pathogenesis-related transcriptional factor and ER... [more]
A0A6H5KQM0_9PHAE2.290e-1666.67AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. ... [more]
A0A835Z3I9_9STRA1.760e-1358.49AP2/ERF domain-containing protein n=1 Tax=Tribonem... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_23contigContig_23:509391..509552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|137719|gw1.23.111.1
BRITEko00000,ko03000
KEGG koko:K09284
GOsGO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0007275,GO:0007389,GO:0008150,GO:0009653,GO:0009791,GO:0009888,GO:0009889,GO:0009908,GO:0010073,GO:0010093,GO:0010154,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0022414,GO:0031323,GO:0031326,GO:0032501,GO:0032502,GO:0035670,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0048316,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048444,GO:0048449,GO:0048467,GO:0048481,GO:0048507,GO:0048608,GO:0048646,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0061458,GO:0065007,GO:0080090,GO:0090567,GO:0090696,GO:0090697,GO:0090698,GO:0090701,GO:0099402,GO:0140110,GO:1903506,GO:1905392,GO:1905393,GO:2000112,GO:2001141
Preferred nameAP2
Descriptionspecification of floral organ identity
COG categoryK
Max annot lvl2759|Eukaryota
EggNOG OGs28UNB@1|root,2QQXB@2759|Eukaryota
Evalue3.42e-17
Seed ortholog2880.D8LFR4
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId138041
TrackFilteredModels1
ProteinId137719
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137719gene_4913Tribonema minus UTEX_B_3156 geneContig_23 509391..509552 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4913_1exon_4913_1Tribonema minus UTEX_B_3156 exonContig_23 509391..509552 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4913CDS_4913Tribonema minus UTEX_B_3156 CDSContig_23 509391..509552 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137719Trimin1|137719|gw1.23.111.1Tribonema minus UTEX_B_3156 polypeptideContig_23 509391..509552 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4913 ID=mRNA_4913|Name=jgi.p|Trimin1|137719|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=162bp|location=Sequence derived from alignment at Contig_23:509391..509552- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TATAGGGGAGTGTGCGTAACAAGGGAGGGCAAGTGGCGCGCCGTCATTTA
CAAGGAGCGCAAGCAGCTGTACCTGGGCGTGTTTGAGAGCGAGGTGGACG
CCGCCAAGGCCCACGACAGGGCGGCACGGCAACACTTCGGGGACCAGGCC
ATGGTCAACTTC
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protein sequence of jgi.p|Trimin1|137719

>Trimin1|137719|gw1.23.111.1 ID=Trimin1|137719|gw1.23.111.1|Name=jgi.p|Trimin1|137719|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=54bp
YRGVCVTREGKWRAVIYKERKQLYLGVFESEVDAAKAHDRAARQHFGDQA
MVNF
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mRNA from alignment at Contig_23:509391..509552-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4913 ID=mRNA_4913|Name=jgi.p|Trimin1|137719|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=162bp|location=Sequence derived from alignment at Contig_23:509391..509552- (Tribonema minus UTEX_B_3156 )
TATAGGGGAGTGTGCGTAACAAGGGAGGGCAAGTGGCGCGCCGTCATTTA
CAAGGAGCGCAAGCAGCTGTACCTGGGCGTGTTTGAGAGCGAGGTGGACG
CCGCCAAGGCCCACGACAGGGCGGCACGGCAACACTTCGGGGACCAGGCC
ATGGTCAACTTC
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Coding sequence (CDS) from alignment at Contig_23:509391..509552-

>mRNA_4913 ID=mRNA_4913|Name=jgi.p|Trimin1|137719|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=162bp|location=Sequence derived from alignment at Contig_23:509391..509552- (Tribonema minus UTEX_B_3156 )
TATAGGGGAGTGTGCGTAACAAGGGAGGGCAAGTGGCGCGCCGTCATTTA
CAAGGAGCGCAAGCAGCTGTACCTGGGCGTGTTTGAGAGCGAGGTGGACG
CCGCCAAGGCCCACGACAGGGCGGCACGGCAACACTTCGGGGACCAGGCC
ATGGTCAACTTC
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