mRNA_4887 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|162839
Unique NamemRNA_4887
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|162839 vs. uniprot
Match: A0A835Z1W6_9STRA (Putative dehydroascorbate reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1W6_9STRA)

HSP 1 Score: 436 bits (1121), Expect = 1.260e-154
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 1 
Query:    1 MPFPSDLPRPPFEFQVPGEQGNPTLCTDPDWTAAMLALDFLGLPYTVVNGGQDCAAPQLEMADEVYDDTHALTAMLEERYVLSDLVQTVDGVLRRVRALRTALETLLLAKEPPAEAAATAELAAELGRVEFRLKSRRDGGDFLEGDELTYGDLELGVTLHHLRAALPHFRPAWAWPEACELLRAYADAMTGMQVFAEVAPPAEAIVARYEALGAVVKAK 657
            MPFPSDLPRPPFEFQVPGEQGNPTLCTDPDWTAAMLALDFLGLPYTVVNGGQDCAAPQLEMADEVYDDTHALTAMLEERYVLSDLVQTVDGVLRRVRALRTALETLLLAKEPPAEAAATAELAAELGRVEFRLKSRRDGGDFLEGDELTYGDLELGVTLHHLRAALPHFRPAWAWPEACELLRAYADAMTGMQVFAEVAPPAEAIVARYEALGAVVKAK
Sbjct:    1 MPFPSDLPRPPFEFQVPGEQGNPTLCTDPDWTAAMLALDFLGLPYTVVNGGQDCAAPQLEMADEVYDDTHALTAMLEERYVLSDLVQTVDGVLRRVRALRTALETLLLAKEPPAEAAATAELAAELGRVEFRLKSRRDGGDFLEGDELTYGDLELGVTLHHLRAALPHFRPAWAWPEACELLRAYADAMTGMQVFAEVAPPAEAIVARYEALGAVVKAK 219
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BLAST of jgi.p|Trimin1|162839 vs. uniprot
Match: D7FWB3_ECTSI (Putative dehydroascorbate reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWB3_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 5.670e-36
Identity = 86/206 (41.75%), Postives = 112/206 (54.37%), Query Frame = 1 
Query:   16 DLPRPPFEFQVPGEQGNPTLCTDPDWTAAMLALDFLGLPYTVVNGGQDCAAPQLEMADEVYDDTHALTAMLEERYVLSDLVQTVDGVLRRVRALRTALETLLLAKEPPAEAAATAE-LAAELGRVE-FRLKSRRDGGDFLEGDELTYGDLELGVTLHHLRAALPHFRPAWAWPEACELLRAYADAMTGMQVFAEVAPPAEAIVARY 627
            DLP+PP+ F+ PGE GN TLCTDP W  A+LA  +LGLPY + +   +  A  LEM DEVYDD   L A L ER +LSD V++++     V  L  A  TL   K    +       L   L ++E   LK     G FLEGD+LT GDL L VT +H+ AA       W +P+    L+A+ D   GMQ+F  V P  E +  +Y
Sbjct:   33 DLPQPPYHFRTPGEFGNDTLCTDPAWHTALLAFRWLGLPYEIEHEDDEDEA-MLEMGDEVYDDAEELLAGLPERVLLSDFVESLEPEKNAVAKLEPAWTTLHFNKAGKTDLDTDERRLNNCLEKIENILLKHGPARGPFLEGDDLTIGDLRLAVTTYHMLAAFD-IEKQWTFPDKLVKLKAHMDLFHGMQMFNMVMPSREDLARKY 236
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BLAST of jgi.p|Trimin1|162839 vs. uniprot
Match: A0A7S3UYC1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UYC1_HETAK)

HSP 1 Score: 125 bits (313), Expect = 4.620e-31
Identity = 82/208 (39.42%), Postives = 112/208 (53.85%), Query Frame = 1 
Query:   19 LPRPPFEFQVPGEQGNPTLCTDPDWTAAMLALDFLGLPYTVV--NGGQDCAAPQLEMADEVYDDTHALTAMLEERYVLSDLVQTVDGVLRRVRALRTALETLLLAKEPPAEAAATAELAAELGRVEFRLKSRRDGGDFLEGDELTYGDLELGVTLHHLRAALPHFRPAWAWPEACELLRAYADAMTGMQVFAEVAPPAEAIVARYEAL 636
            L  PPF+ +VPGEQG  TL TDP W + +LAL FLGLP  VV   G      P L M  EV +D     A+L ERYVLSDLV++   +   V  +  +    LL K+          L + L  ++ RL+  R  G+++E DE+T  DL L   LHH++ AL HF+     PE  + L  YAD +  M+V   +  P + +VA+Y AL
Sbjct:  107 LAEPPFDLRVPGEQGQATLVTDPAWLSVLLALRFLGLPCDVVPSKGFLPEDRPSLVMGQEVVEDAARALALLCERYVLSDLVESATPIQEVVAPIYPSFLEFLLNKDSSKNKELKKALQSNLYFLDKRLQRSR--GEYIESDEVTISDLVLAPQLHHMQVALKHFKNFSFSPEL-KALNTYADNLLNMEVVRLMLVPDDLVVAKYAAL 311
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|162839 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835Z1W6_9STRA1.260e-154100.00Putative dehydroascorbate reductase n=1 Tax=Tribon... [more]
D7FWB3_ECTSI5.670e-3641.75Putative dehydroascorbate reductase n=2 Tax=Ectoca... [more]
A0A7S3UYC1_HETAK4.620e-3139.42Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_23contigContig_23:400754..402640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|162839|e_gw1.23.197.1
KEGG TC1.A.12.2.1
BRITEko00000,ko00001,ko01000,ko02000
KEGG rclassRC00011,RC00092,RC00948
KEGG ReactionR01108,R03522
KEGG Pathwayko00053,ko00480,ko01100,map00053,map00480,map01100
KEGG koko:K21888
EC1.8.5.1,2.5.1.18
GOsGO:0003674,GO:0003824,GO:0004364,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006464,GO:0006518,GO:0006575,GO:0006749,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009636,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010646,GO:0010647,GO:0010731,GO:0015036,GO:0015037,GO:0015038,GO:0016020,GO:0016209,GO:0016491,GO:0016667,GO:0016672,GO:0016740,GO:0016765,GO:0019538,GO:0023051,GO:0023056,GO:0031967,GO:0031975,GO:0033218,GO:0034641,GO:0036211,GO:0042221,GO:0042277,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043295,GO:0043412,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045174,GO:0048037,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051186,GO:0051716,GO:0055114,GO:0065007,GO:0070887,GO:0071704,GO:0071944,GO:0072341,GO:0080151,GO:0097237,GO:0098754,GO:0098869,GO:1900750,GO:1901564,GO:1901681,GO:1990748,GO:2000031,GO:2001023,GO:2001025,GO:2001038,GO:2001040
Preferred nameDHAR2
Descriptionglutathione S-transferase
COG categoryO
Max annot lvl35493|Streptophyta
EggNOG OGsKOG1422@1|root,KOG1422@2759|Eukaryota,37RH5@33090|Viridiplantae,3GX5Q@35493|Streptophyta
Evalue6.16e-07
Seed ortholog3218.PP1S12_401V6.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPutative dehydroascorbate reductase
Ec32 orthologEc-25_003730.1
TranscriptId163161
TrackFilteredModels1
ProteinId162839
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162839gene_4887Tribonema minus UTEX_B_3156 geneContig_23 400754..402640 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162839Trimin1|162839|e_gw1.23.197.1Tribonema minus UTEX_B_3156 polypeptideContig_23 400754..402640 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4887_3exon_4887_3Tribonema minus UTEX_B_3156 exonContig_23 400754..401257 -
exon_4887_2exon_4887_2Tribonema minus UTEX_B_3156 exonContig_23 402121..402231 -
exon_4887_1exon_4887_1Tribonema minus UTEX_B_3156 exonContig_23 402596..402640 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4887CDS_4887Tribonema minus UTEX_B_3156 CDSContig_23 402596..402640 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4887 ID=mRNA_4887|Name=jgi.p|Trimin1|162839|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=660bp|location=Sequence derived from alignment at Contig_23:400754..402640- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCATTTCCTAGCGATCTGCCCAGACCTCCATTTGAGTTTCAGGTGCC
GGGAGAGCAGGGAAACCCCACTCTGTGCACGGACCCGGATTGGACAGCTG
CCATGCTGGCATTAGACTTTCTTGGGCTGCCTTACACGGTGGTCAACGGA
GGGCAGGACTGCGCCGCGCCGCAGCTGGAGATGGCGGACGAGGTGTACGA
CGACACGCACGCGCTCACCGCAATGCTCGAGGAGCGCTACGTCCTCAGCG
ACCTCGTGCAGACGGTGGACGGCGTGCTGCGCCGCGTGCGCGCGCTGCGG
ACCGCGCTCGAGACCCTTCTCCTCGCCAAGGAACCTCCCGCGGAGGCCGC
CGCGACCGCAGAGCTCGCCGCGGAGCTCGGGCGCGTCGAGTTCCGCCTCA
AGTCGCGCCGCGACGGCGGCGACTTCCTCGAGGGCGACGAGCTGACGTAC
GGCGACCTTGAACTCGGGGTGACGCTCCACCACCTGCGCGCCGCGCTGCC
GCACTTCCGGCCGGCGTGGGCGTGGCCGGAGGCGTGCGAGCTGCTGCGCG
CGTACGCGGACGCGATGACGGGCATGCAGGTGTTCGCGGAGGTCGCGCCG
CCTGCGGAGGCGATAGTTGCGCGGTATGAGGCGCTGGGCGCTGTCGTGAA
GGCCAAGTGA
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protein sequence of jgi.p|Trimin1|162839

>Trimin1|162839|e_gw1.23.197.1 ID=Trimin1|162839|e_gw1.23.197.1|Name=jgi.p|Trimin1|162839|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=220bp
MPFPSDLPRPPFEFQVPGEQGNPTLCTDPDWTAAMLALDFLGLPYTVVNG
GQDCAAPQLEMADEVYDDTHALTAMLEERYVLSDLVQTVDGVLRRVRALR
TALETLLLAKEPPAEAAATAELAAELGRVEFRLKSRRDGGDFLEGDELTY
GDLELGVTLHHLRAALPHFRPAWAWPEACELLRAYADAMTGMQVFAEVAP
PAEAIVARYEALGAVVKAK*
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mRNA from alignment at Contig_23:400754..402640-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4887 ID=mRNA_4887|Name=jgi.p|Trimin1|162839|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1887bp|location=Sequence derived from alignment at Contig_23:400754..402640- (Tribonema minus UTEX_B_3156 )
ATGCCATTTCCTAGCGATCTGCCCAGACCTCCATTTGAGTTTCAGGTAAT
CAACTGCACTTACGTTTGCCTGCCTCAGCAGAAACACTATACTATACGCG
AAAGCTGCTTGCACAGAAACCTTGGCCTCTTGCTAAAACTTACTGCTCGT
AGCTCAACAGCGGCGAAGCAATGGTATGGTGCTTGTTGGCCAAACTTTCG
CGACTGACAGAGGACCTCGTCAGGTCACTGCAGCTGTGCTGATGCGGTTT
TGCTTCTTTTGGTACCGCGTGACGAGCAGTAGTGCTGTGCTTCATGATAC
TGCACAGCTGTACTATCGATTGCTTGCGCTGACATCATGTGATAAGCATA
GCTTTCGGTTGTCGTGATTCGGTTCGATGCGTGCGGTCATGTTGAACTTG
CCGTCGCAGGTGCCGGGAGAGCAGGGAAACCCCACTCTGTGCACGGACCC
GGATTGGACAGCTGCCATGCTGGCATTAGACTTTCTTGGGCTGCCTTACA
CGGTGGTCAACGGAGGGCAGGTTGGTGCTCAAGTAATTTCTTAGGATTAG
ATTTAGGTAATCTGCTGCCTCGCGCGCAAACAGGTGAATAGACCAGGTCG
CGAATCACAACCCTATTTGAAGCATTTCAGTATGCGCACCGCCCAAAATG
GCTCTGGAAAAACCTTCTGGCGCTGCTGTGGCACTGCTGTAGAAGTTATG
CCACTGCGCCACGTGCCGACGCATCAGCACTATACCTAACCCTAACCCTA
ACCCTAAAAAAATCTATAGCGCATGTAGTATGCGACTGCCACCGACGAAA
GCGTATGATGTTCAGCAAGTCGTCCTCAGGACGCGCCAATTGTCATGGCA
GCATGAAGCGCGGTGACGCTGCCGCAAACCTCGCGATCTCTAGAGTAGTG
CACTAAGTGCAGTCCATCGGGCATATATCTGGGACGATGCTGTCTTCGTG
ACTGGGCGCAGGTGATCATTCCGCGTAGCAAATGAATTGCATATGCATTT
GACAGTTTGATTCCCGTCAGTCTGCCCCCTGAAAGAATCTGCATGAAGTG
CTCATCACCAGCAGTGCGCAGGACTAGACTACATGGCGTCGCAGCCCAGA
TGGAAGGGTTTTGATTGGCCGACACCATCCTCAGCGCACGCATACATCTT
CATTGCCGTCCTTGATCGATGGCATGTCATGACCTGCAGTATGCTACTTC
ATCAAAAATTTTCCTCAGACGCAGTACAATCCTCGATGTCATCGAGTTCA
GCGCACGTCTCATCATTGCACTGTTGCAACAATCAGCACAGCCACGATCA
CACCCCTACACATCCCCCCCCCCCTGACCCACCGCCCTACCCTCTCGCGA
CCGCCGCCCGACCCTGCGCACTTAACGCCGCAGGACTGCGCCGCGCCGCA
GCTGGAGATGGCGGACGAGGTGTACGACGACACGCACGCGCTCACCGCAA
TGCTCGAGGAGCGCTACGTCCTCAGCGACCTCGTGCAGACGGTGGACGGC
GTGCTGCGCCGCGTGCGCGCGCTGCGGACCGCGCTCGAGACCCTTCTCCT
CGCCAAGGAACCTCCCGCGGAGGCCGCCGCGACCGCAGAGCTCGCCGCGG
AGCTCGGGCGCGTCGAGTTCCGCCTCAAGTCGCGCCGCGACGGCGGCGAC
TTCCTCGAGGGCGACGAGCTGACGTACGGCGACCTTGAACTCGGGGTGAC
GCTCCACCACCTGCGCGCCGCGCTGCCGCACTTCCGGCCGGCGTGGGCGT
GGCCGGAGGCGTGCGAGCTGCTGCGCGCGTACGCGGACGCGATGACGGGC
ATGCAGGTGTTCGCGGAGGTCGCGCCGCCTGCGGAGGCGATAGTTGCGCG
GTATGAGGCGCTGGGCGCTGTCGTGAAGGCCAAGTGA
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Coding sequence (CDS) from alignment at Contig_23:400754..402640-

>mRNA_4887 ID=mRNA_4887|Name=jgi.p|Trimin1|162839|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=660bp|location=Sequence derived from alignment at Contig_23:400754..402640- (Tribonema minus UTEX_B_3156 )
ATGCCATTTCCTAGCGATCTGCCCAGACCTCCATTTGAGTTTCAGGTGCC
GGGAGAGCAGGGAAACCCCACTCTGTGCACGGACCCGGATTGGACAGCTG
CCATGCTGGCATTAGACTTTCTTGGGCTGCCTTACACGGTGGTCAACGGA
GGGCAGGACTGCGCCGCGCCGCAGCTGGAGATGGCGGACGAGGTGTACGA
CGACACGCACGCGCTCACCGCAATGCTCGAGGAGCGCTACGTCCTCAGCG
ACCTCGTGCAGACGGTGGACGGCGTGCTGCGCCGCGTGCGCGCGCTGCGG
ACCGCGCTCGAGACCCTTCTCCTCGCCAAGGAACCTCCCGCGGAGGCCGC
CGCGACCGCAGAGCTCGCCGCGGAGCTCGGGCGCGTCGAGTTCCGCCTCA
AGTCGCGCCGCGACGGCGGCGACTTCCTCGAGGGCGACGAGCTGACGTAC
GGCGACCTTGAACTCGGGGTGACGCTCCACCACCTGCGCGCCGCGCTGCC
GCACTTCCGGCCGGCGTGGGCGTGGCCGGAGGCGTGCGAGCTGCTGCGCG
CGTACGCGGACGCGATGACGGGCATGCAGGTGTTCGCGGAGGTCGCGCCG
CCTGCGGAGGCGATAGTTGCGCGGTATGAGGCGCTGGGCGCTGTCGTGAA
GGCCAAGTGA
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