mRNA_4852 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|45449
Unique NamemRNA_4852
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|45449 vs. uniprot
Match: A0A836CII4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CII4_9STRA)

HSP 1 Score: 274 bits (700), Expect = 1.700e-91
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 3 
Query:    6 MVLFRPRAAAHRVPAGAPHEARPRQXXXXXXXXSSMHAAQWQKGAAMLTLAINLGLPAVVALRHPSAQNAPGASAAVAGTRQRRAAASHTQTIRSVAQERLVAVVLLPPTLRAQLQRRCRGTMCCMGGGSQLFTAERCGSAHDADALTGDSP 461
            MVLFRPRAAAHRVPAGAPHEARPRQXXXXXXXXSSMHAAQWQKGAAMLTLAINLGLPAVVALRHPSAQNAPGASAAVAGTRQRRAAASHTQTIRSVAQERLVAVVLLPPTLRAQLQRRCRGTMCCMGGGSQLFTAERCGSAHDADALTGDSP
Sbjct:    1 MVLFRPRAAAHRVPAGAPHEARPRQXXXXXXXXSSMHAAQWQKGAAMLTLAINLGLPAVVALRHPSAQNAPGASAAVAGTRQRRAAASHTQTIRSVAQERLVAVVLLPPTLRAQLQRRCRGTMCCMGGGSQLFTAERCGSAHDADALTGDSP 152
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|45449 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CII4_9STRA1.700e-91100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_23contigContig_23:1777..2438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|45449|CE45448_15
Hectar predicted targeting categorymitochondrion
TranscriptId45771
TrackFilteredModels1
ProteinId45449
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|45449gene_4852Tribonema minus UTEX_B_3156 geneContig_23 1777..2438 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4852_1exon_4852_1Tribonema minus UTEX_B_3156 exonContig_23 1777..2438 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_4852UTR5_4852Tribonema minus UTEX_B_3156 five_prime_UTRContig_23 1777..1781 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4852CDS_4852Tribonema minus UTEX_B_3156 CDSContig_23 1782..2240 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_4852UTR3_4852Tribonema minus UTEX_B_3156 three_prime_UTRContig_23 2241..2438 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|45449Trimin1|45449|CE45448_15Tribonema minus UTEX_B_3156 polypeptideContig_23 1782..2240 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4852 ID=mRNA_4852|Name=jgi.p|Trimin1|45449|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=662bp|location=Sequence derived from alignment at Contig_23:1777..2438+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGCGAATGGTGCTATTCAGGCCGCGCGCCGCCGCGCACCGTGTGCCGGCA
GGCGCTCCCCATGAGGCACGCCCTCGGCAGCAGCAGCAGCGGCAGCAGCA
GCAGAGCTCAATGCATGCAGCACAATGGCAAAAAGGGGCCGCCATGCTGA
CCCTGGCCATCAACCTGGGGCTGCCAGCGGTGGTCGCGCTGCGACATCCC
TCGGCGCAGAATGCTCCAGGTGCGTCCGCTGCAGTGGCGGGCACGCGGCA
GCGACGCGCCGCTGCTTCGCACACGCAGACCATAAGGTCAGTGGCGCAGG
AACGCCTGGTGGCGGTGGTGCTGCTTCCGCCGACGCTGCGTGCTCAGCTG
CAGCGCCGCTGCCGCGGGACGATGTGCTGCATGGGCGGCGGCTCGCAGCT
CTTCACCGCTGAGCGTTGTGGCTCAGCGCATGACGCGGATGCGCTCACTG
GCGATTCGCCTTGAGAGCTCTCGCTGCATGGCCTTCGGAAGACAGGATTA
AGGGACGAGTGCGCAGGTTCGCCACGCTGTGCTCCAAAGGCGACATCTTG
CGCAGCCCTACGGTCGCAAGAGTTGCCACCGTCACGCATGGCGCAAAGTC
CTCCTGTGGCTCCCTTCCGCATCTATGTCGTCGTCTGCGACAAGCGCAGC
AGTGCTACGGCG
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protein sequence of jgi.p|Trimin1|45449

>Trimin1|45449|CE45448_15 ID=Trimin1|45449|CE45448_15|Name=jgi.p|Trimin1|45449|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=153bp
MVLFRPRAAAHRVPAGAPHEARPRQQQQRQQQQSSMHAAQWQKGAAMLTL
AINLGLPAVVALRHPSAQNAPGASAAVAGTRQRRAAASHTQTIRSVAQER
LVAVVLLPPTLRAQLQRRCRGTMCCMGGGSQLFTAERCGSAHDADALTGD
SP*
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mRNA from alignment at Contig_23:1777..2438+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4852 ID=mRNA_4852|Name=jgi.p|Trimin1|45449|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=662bp|location=Sequence derived from alignment at Contig_23:1777..2438+ (Tribonema minus UTEX_B_3156 )
CGCGAATGGTGCTATTCAGGCCGCGCGCCGCCGCGCACCGTGTGCCGGCA
GGCGCTCCCCATGAGGCACGCCCTCGGCAGCAGCAGCAGCGGCAGCAGCA
GCAGAGCTCAATGCATGCAGCACAATGGCAAAAAGGGGCCGCCATGCTGA
CCCTGGCCATCAACCTGGGGCTGCCAGCGGTGGTCGCGCTGCGACATCCC
TCGGCGCAGAATGCTCCAGGTGCGTCCGCTGCAGTGGCGGGCACGCGGCA
GCGACGCGCCGCTGCTTCGCACACGCAGACCATAAGGTCAGTGGCGCAGG
AACGCCTGGTGGCGGTGGTGCTGCTTCCGCCGACGCTGCGTGCTCAGCTG
CAGCGCCGCTGCCGCGGGACGATGTGCTGCATGGGCGGCGGCTCGCAGCT
CTTCACCGCTGAGCGTTGTGGCTCAGCGCATGACGCGGATGCGCTCACTG
GCGATTCGCCTTGAGAGCTCTCGCTGCATGGCCTTCGGAAGACAGGATTA
AGGGACGAGTGCGCAGGTTCGCCACGCTGTGCTCCAAAGGCGACATCTTG
CGCAGCCCTACGGTCGCAAGAGTTGCCACCGTCACGCATGGCGCAAAGTC
CTCCTGTGGCTCCCTTCCGCATCTATGTCGTCGTCTGCGACAAGCGCAGC
AGTGCTACGGCG
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Coding sequence (CDS) from alignment at Contig_23:1777..2438+

>mRNA_4852 ID=mRNA_4852|Name=jgi.p|Trimin1|45449|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=459bp|location=Sequence derived from alignment at Contig_23:1777..2438+ (Tribonema minus UTEX_B_3156 )
ATGGTGCTATTCAGGCCGCGCGCCGCCGCGCACCGTGTGCCGGCAGGCGC
TCCCCATGAGGCACGCCCTCGGCAGCAGCAGCAGCGGCAGCAGCAGCAGA
GCTCAATGCATGCAGCACAATGGCAAAAAGGGGCCGCCATGCTGACCCTG
GCCATCAACCTGGGGCTGCCAGCGGTGGTCGCGCTGCGACATCCCTCGGC
GCAGAATGCTCCAGGTGCGTCCGCTGCAGTGGCGGGCACGCGGCAGCGAC
GCGCCGCTGCTTCGCACACGCAGACCATAAGGTCAGTGGCGCAGGAACGC
CTGGTGGCGGTGGTGCTGCTTCCGCCGACGCTGCGTGCTCAGCTGCAGCG
CCGCTGCCGCGGGACGATGTGCTGCATGGGCGGCGGCTCGCAGCTCTTCA
CCGCTGAGCGTTGTGGCTCAGCGCATGACGCGGATGCGCTCACTGGCGAT
TCGCCTTGA
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