mRNA_4828 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|7497
Unique NamemRNA_4828
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|7497 vs. uniprot
Match: A0A835ZIQ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIQ3_9STRA)

HSP 1 Score: 712 bits (1838), Expect = 2.450e-257
Identity = 383/383 (100.00%), Postives = 383/383 (100.00%), Query Frame = 3 
Query:   90 MDTFYVTQTERSPLAVLFRGNLRKQDSEAVFAKVQERLQAQPGGLGERVQLLLMPDFTPPSMDDMDAGEDAQARPIFLAISTQAQPKQPTAFTYVFSLATLVASAFTAFAYALGTFALNTEFFAKVNDGDLSVASQALPVAAGILGLQLVHELAHRLAALASGKKNLLGPPVFIPSLQVGTFGTITPFTTFPRDRKQAFDVSVAGPALGAVVSLGALIGGLLLTGGATTDALAAFPVVPAALFHSSAIIGTITSIALPQAMLQALSTPVPLHPLAVIGFTGVIVNALNLMPVGRLDGGRLAAAGFGRRTAAVLGTLTLLLQAASAIFNNYSLQLFWGLVVIIFQRGQDLPALDEVSEVDEGRNTVLLVLLAFALFTLVPFPSL 1238
            MDTFYVTQTERSPLAVLFRGNLRKQDSEAVFAKVQERLQAQPGGLGERVQLLLMPDFTPPSMDDMDAGEDAQARPIFLAISTQAQPKQPTAFTYVFSLATLVASAFTAFAYALGTFALNTEFFAKVNDGDLSVASQALPVAAGILGLQLVHELAHRLAALASGKKNLLGPPVFIPSLQVGTFGTITPFTTFPRDRKQAFDVSVAGPALGAVVSLGALIGGLLLTGGATTDALAAFPVVPAALFHSSAIIGTITSIALPQAMLQALSTPVPLHPLAVIGFTGVIVNALNLMPVGRLDGGRLAAAGFGRRTAAVLGTLTLLLQAASAIFNNYSLQLFWGLVVIIFQRGQDLPALDEVSEVDEGRNTVLLVLLAFALFTLVPFPSL
Sbjct:    1 MDTFYVTQTERSPLAVLFRGNLRKQDSEAVFAKVQERLQAQPGGLGERVQLLLMPDFTPPSMDDMDAGEDAQARPIFLAISTQAQPKQPTAFTYVFSLATLVASAFTAFAYALGTFALNTEFFAKVNDGDLSVASQALPVAAGILGLQLVHELAHRLAALASGKKNLLGPPVFIPSLQVGTFGTITPFTTFPRDRKQAFDVSVAGPALGAVVSLGALIGGLLLTGGATTDALAAFPVVPAALFHSSAIIGTITSIALPQAMLQALSTPVPLHPLAVIGFTGVIVNALNLMPVGRLDGGRLAAAGFGRRTAAVLGTLTLLLQAASAIFNNYSLQLFWGLVVIIFQRGQDLPALDEVSEVDEGRNTVLLVLLAFALFTLVPFPSL 383
[Close]
BLAST of jgi.p|Trimin1|7497 vs. uniprot
Match: D8LMD3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD3_ECTSI)

HSP 1 Score: 404 bits (1038), Expect = 1.980e-130
Identity = 220/433 (50.81%), Postives = 296/433 (68.36%), Query Frame = 3 
Query:    3 VPPTLLRYVSGAPAIVDEDVEVLQKQVFGMDTFYVTQTERSPLAVLFRGNLRKQDSEA---------------------VFAKVQERLQAQPGGLGERVQLLLMPDFTPPSMDDMDAGEDAQARPIFLAISTQAQPKQPTAFTYVFSLA-TLVASAFTAFAYALGTFALNTEFFAKVNDGDLSVASQALPVAAGILGLQLVHELAHRLAALASGKKNL-LGPPVFIPSLQVGTFGTITPFTTFPRDRKQAFDVSVAGPALGAVVSLGALIGGLLLTGGATTDALAAFPVVPAALFHSSAIIGTITSIALPQAMLQALSTPVPLHPLAVIGFTGVIVNALNLMPVGRLDGGRLAAAGFGRRTAAVLGTLTLLLQAASAIFNNYSLQLFWGLVVIIFQRGQDLPALDEVSEVDEGRNTVLLVLLAFALFTLVPFP 1232
            VP +LL++V  APA+++ D+E ++  V GM TFYVT  E+SP A L+RGN+R + SE                      VF  V  +L++ PG L +RVQL LM D TP + +      D    P+ + IS +A+P Q +    +   A T + +AFTAFAY +G FAL  EF+ K+N+GD++VA  ALP+  G+L LQ +HE+ HR+ A   G K++ +GPP+FIPSLQ G FG ITP  +FP++RK  FDV+ AGP LG  VSL   + G+++TG AT +AL  FP+VPA LFHSS ++G +TSI LP  M  A+++ VP+HPLA++G TG+IVNALNLMP+G LDGGR+A + FGR+   VLGT+TLLLQA S++FNNYSLQLFWGL+VI+FQRGQDLPA DE++EV EGR     +LL F+L TL+PFP
Sbjct:  353 VPTSLLKFVGSAPALLEADIETVKSDVLGMKTFYVTGMEKSPFAALYRGNMRGKSSEECSEGVKKDGAPNRRWASFHQEVFEAVTAKLESIPG-LSDRVQLFLMGDPTPLTPEQAVQMGDKPVDPVLMLISKEAKPGQTSKVISISGTAITFMGTAFTAFAYGIGNFALRPEFYEKINEGDVAVAGMALPIMMGVLTLQFIHEIGHRVMA---GNKDIEMGPPIFIPSLQTGLFGAITPLLSFPKNRKDYFDVASAGPLLGTFVSLAVFVVGIMMTGSATPEALEMFPLVPAGLFHSSLLVGIMTSIGLPNVMGLAVASTVPIHPLAIVGVTGIIVNALNLMPIGSLDGGRIAMSAFGRKAGGVLGTVTLLLQAISSVFNNYSLQLFWGLLVILFQRGQDLPAKDELTEVGEGRIVTTGLLLFFSLITLIPFP 781
[Close]
BLAST of jgi.p|Trimin1|7497 vs. uniprot
Match: A0A835ZNX7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZNX7_9STRA)

HSP 1 Score: 354 bits (909), Expect = 4.890e-117
Identity = 225/331 (67.98%), Postives = 236/331 (71.30%), Query Frame = 3 
Query:  423 ALGTFALNTEFFAKVNDGDLSVASQALP------------------VAAGILGLQLVHELAHRLAALASGKK---------NLLGPPVFIPSLQVGTFGTITPFTTFPRDRKQAFDVSVAGPALGAVVSLGALIGGLLLTGGATTDALAAFPVVPAALFHSSAIIGTITSIALPQAMLQALSTPVPLHPLAVIGFTGVIVNALNLMPVGRLDGGRLAAAGFGRRTAAVLGTLTLLLQ-----------------AASAIFNNYSLQLFWGLVVIIFQRGQDLPA---------------LDEVSEVDEGRNTVLLVLLAFALFTLVPFPSL 1238
            A+G  ALN+EFFAKVNDGDL VASQALP                  VAAGILGLQLVHELAHRLAALASGKK         + L P +F+ +L+      + P    P         SVAGPALGA VSLGALIGGLLLTGGAT DALAAFPVVPAALFHSSA IGTITSIALPQAMLQALSTPVPLHPLAVIG  GVIVNALNLMPVGRLDG RLAAAGFGRRTAAVLGTLTLLLQ                 AASAIFNN+SLQLFWGL VIIFQRGQDLPA               + +VSE DEGRNTVLLVLLAFALFTLVPFPSL
Sbjct:   10 AIGDAALNSEFFAKVNDGDLLVASQALPXXXXXXXXXXXXXXXXXXVAAGILGLQLVHELAHRLAALASGKKKEAAGTPCVHPLSPELFVVTLK----NLLVPPVFNPL-------CSVAGPALGAAVSLGALIGGLLLTGGATADALAAFPVVPAALFHSSATIGTITSIALPQAMLQALSTPVPLHPLAVIGLMGVIVNALNLMPVGRLDGERLAAAGFGRRTAAVLGTLTLLLQIVRHPQRTAAIITHFLDAASAIFNNHSLQLFWGLAVIIFQRGQDLPATRGEEGSLALHEGGTMVQVSEFDEGRNTVLLVLLAFALFTLVPFPSL 329
[Close]
BLAST of jgi.p|Trimin1|7497 vs. uniprot
Match: A0A2V3J2Y1_9FLOR (Putative zinc metalloprotease EGY2, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2Y1_9FLOR)

HSP 1 Score: 290 bits (742), Expect = 8.900e-89
Identity = 166/402 (41.29%), Postives = 244/402 (60.70%), Query Frame = 3 
Query:   39 PAIVDEDVEVLQKQVFGMDTFYVTQTERSPL--AVLFRGNLRKQDSEAVFAKVQERLQ--AQPGGLGERVQLLLMPDFTPPSMDDMDAGEDAQARPIFLAISTQAQPKQPTAFTYVFSLATLVASAFTAFAYALGTFALNTEFFAKVNDGDLSVASQALPVAAGILGLQLVHELAHRLAALASGKKNLLGPPVFIPSLQVGTFGTITPFTTFPRDRKQAFDVSVAGPALGAVVSLGALIGGLLLTGGATTDALAAFPVVPAALFHSSAIIGTITSIALPQAMLQALSTPVPLHPLAVIGFTGVIVNALNLMPVGRLDGGRLAAAGFGRRTAAVLGTLTLLLQAASAIFNNYSLQLFWGLVVIIFQRGQDLPALDEVSEVDEGRNTVLLVLLAFALFTLVPFP 1232
            P + + D+E++++++ GM TF+VT  +RSP    V+FRGN+R         K+ + L+  A+  G+ +RV+L L+        D  D  +    RP+ +A+   A+P+Q   F+ +FS+    A+ FT F+Y +G F L  +  +++  G L  A   +PV+AG + + L+H++ HR+AA   G K  LG P FIPSLQ+GT+GTITP  ++PR R+  FD +VAGP +G +VSL ALI GL++TG  + +    FP VP+ LFH+S ++G +  I LP  + +     + +HPL VIG+TG++VNALNLMP+GRLDGGR+  A +GR  A     LTL LQA S++  N  L LFWGLV +  QR  D P  +EV E D  R  + L  L   L  L+PFP
Sbjct:  179 PRVSESDIEIIKEKLCGMKTFFVTDVDRSPFDERVVFRGNMRLSAD-----KLLDHLEILAKKEGIADRVRLFLL-------YDPKDTADGDDKRPVLVALPAAAKPRQTNTFSAIFSVVLGFAACFTTFSYGIGIFGLTPDVVSEIAKGSLEEALLTVPVSAGAIAISLIHDIGHRVAASVRGIK--LGLPFFIPSLQIGTYGTITPLESYPRLRRDMFDFAVAGPIVGTLVSLAALIAGLVITG--SGEVANWFPQVPSNLFHASVLVGAVADIILPPGLRE--QATIAVHPLTVIGYTGLLVNALNLMPIGRLDGGRIVQALYGRAIAGRASALTLFLQAVSSLVGNSPLLLFWGLVCVFLQRESDYPCQNEVIEPDSTRTAIGLAALCVMLLVLIPFP 562
[Close]
BLAST of jgi.p|Trimin1|7497 vs. uniprot
Match: A0A5J4Z2W4_PORPP (Putative zinc metalloprotease EGY1, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z2W4_PORPP)

HSP 1 Score: 286 bits (732), Expect = 1.260e-86
Identity = 167/405 (41.23%), Postives = 246/405 (60.74%), Query Frame = 3 
Query:   30 SGAPAIVDEDVEVLQKQVFGMDTFYVTQTERSPLA--VLFRGNLRK-QDSEAVFAKVQERLQAQPGGLGERVQLLLMPDFTPPSMDDMDAGEDAQARPIFLAISTQAQPKQPTAFTYVFSLATLVASAFTAFAYALGTFALNTEFFAKVNDGDLSVASQALPVAAGILGLQLVHELAHRLAALASGKKNL-LGPPVFIPSLQVGTFGTITPFTTFPRDRKQAFDVSVAGPALGAVVSLGALIGGLLLTGGATTDALAAFPVVPAALFHSSAIIGTITSIALPQAMLQALSTPVPLHPLAVIGFTGVIVNALNLMPVGRLDGGRLAAAGFGRRTAAVLGTLTLLLQAASAIFNNYSLQLFWGLVVIIFQRGQDLPALDEVSEVDEGRNTVLLVLLAFALFTLVPFP 1232
            +  P I +EDV+ LQ  VFGM +F+VT+  +SPL   V+FRGN+R   DS+AVFA +  ++      L ERV+L L+ D             +   RP+ +A+  +A P    A  + F++   V S  T   Y++G+F LN +F  ++  G+      ALP+A G  G+ L H++A R+ A    +KN+ LG P+F+PSLQ+GT+G ITPF +FP+DR   FDV+  GP +G ++SL +L+ GL ++G  +T+A A+ P +P ALFHSS ++ T  S  LP  +LQ   + + +HPL V+G+TG ++NALNL+PVGRLDGGR+  +  GR  A +  T+ L LQ  S+I    SL L WGL+ I  QR  ++P  +E+SE  E R+ +   LLA AL  L+P P
Sbjct:  236 ANVPLISEEDVQELQAHVFGMGSFFVTKVIKSPLQDRVVFRGNMRAGMDSDAVFAALTAKMDEHK--LSERVRLFLLEDI------------ENDKRPVVIALPARATPAPSRARDF-FAVVAGVLSLLTCAGYSVGSFGLNPKFMEQIAQGNTEELWAALPIALGTFGIMLAHDIAQRIVA---AQKNIELGLPLFVPSLQLGTYGAITPFISFPKDRNDMFDVAAVGPLVGMILSLSSLVSGLYMSGLVSTEAAASLPTIPTALFHSSLLLNTFASSLLPDGLLQ--QSTISVHPLVVVGYTGALINALNLIPVGRLDGGRIVQSVLGRARAGIFSTVALALQGFSSILGGNSLLLIWGLITIFLQREPEIPCQNEISEPSEARSAMGTFLLALALLILLPVP 620
[Close]
BLAST of jgi.p|Trimin1|7497 vs. uniprot
Match: R7Q4W8_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4W8_CHOCR)

HSP 1 Score: 276 bits (706), Expect = 1.170e-83
Identity = 162/401 (40.40%), Postives = 242/401 (60.35%), Query Frame = 3 
Query:   39 PAIVDEDVEVLQKQVFGMDTFYVTQTERSPL--AVLFRGNLRKQDSEAVFAKVQERLQAQPGGLGERVQLLLMPDFTPPSMDDMDAGEDAQARPIFLAISTQAQPKQPTAFTYVFSLATLVASAFTAFAYALGTFALNTEFFAKVNDGDLSVASQALPVAAGILGLQLVHELAHRLAALASGKKNLLGPPVFIPSLQVGTFGTITPFTTFPRDRKQAFDVSVAGPALGAVVSLGALIGGLLLTG-GATTDALAAFPVVPAALFHSSAIIGTITSIALPQAMLQALSTPVPLHPLAVIGFTGVIVNALNLMPVGRLDGGRLAAAGFGRRTAAVLGTLTLLLQAASAIFNNYSLQLFWGLVVIIFQRGQDLPALDEVSEVDEGRNTVLLVLLAFALFTLVPFP 1232
            P + + D+ V++ ++ G++TF+ T+ +RSP    V+FRGN+R Q ++ + A +++   A+  G+ ER++L L+       +D  D  +    RP+ +A+   A P Q  +F+YV S+   + +  T F+Y +G F L  E   ++  G L  A   LPV+ G + L  +HE  HR+AA     K  +G P FIPSLQ+GT+GTITP  ++P  RK  FDV+VAGP +G+V S+ ALI GLL+T  G   D    FP VP+ALFH+S ++G++  I LP  + +     + +HPLAV+G+TG++ NALNLMP+GRLDGGR+  A +GR  A+    +TLLLQ  S++  N  L LFWGLV +  QR  D P  +EV E D  R  + +  +   L  L+PFP
Sbjct:  159 PRVSESDINVIRDKLCGINTFFCTEVDRSPFDERVVFRGNMR-QPADKLLATLEDM--AKEEGIAERIRLFLL-------IDPKDGPDGEDNRPVLVALPAAAMPNQTNSFSYVVSVLMGLVACATTFSYGIGIFGLTPEVITQIAKGSLDEAILTLPVSIGAIILAFMHEAGHRVAASMRDVK--IGLPYFIPSLQIGTYGTITPLESYPNLRKDLFDVAVAGPLVGSVASISALIAGLLITSSGQIADW---FPQVPSALFHASILVGSLADIILPAGLRE--QATIAVHPLAVVGYTGLLANALNLMPIGRLDGGRIMQALYGRAVASRATAITLLLQGFSSLLGNSPLLLFWGLVAVFLQRESDYPCRNEVLEPDGTRTAIGVGAICLMLLVLIPFP 542
[Close]
BLAST of jgi.p|Trimin1|7497 vs. uniprot
Match: A0A7S0XJC7_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0XJC7_9RHOD)

HSP 1 Score: 272 bits (695), Expect = 3.870e-82
Identity = 159/404 (39.36%), Postives = 236/404 (58.42%), Query Frame = 3 
Query:   33 GAPAIV-DEDVEVLQKQVFGMDTFYVTQTERSPLA--VLFRGNLRKQDSEAVFAKVQERLQAQPGGLGERVQLLLMPDFTPPSMDDMDAGEDAQARPIFLAISTQAQPKQPTAFTYVFSLATLVASAFTAFAYALGTFALNTEFFAKVNDGDLSVASQALPVAAGILGLQLVHELAHRLAALASGKKNLLGPPVFIPSLQVGTFGTITPFTTFPRDRKQAFDVSVAGPALGAVVSLGALIGGLLLTGGATTDALAAFPVVPAALFHSSAIIGTITSIALPQAMLQALSTPVPLHPLAVIGFTGVIVNALNLMPVGRLDGGRLAAAGFGRRTAAVLGTLTLLLQAASAIFNNYSLQLFWGLVVIIFQRGQDLPALDEVSEVDEGRNTVLLVLLAFALFTLVPFPS 1235
            G+P ++ +ED+  ++++V G  +FYVT  ER P    V+FRGNLR  DS   F K+ E L  +  G+ +RV+L LM D             +    P+ +A+   A P +      +F +   + S FT+  Y++G F LNTEF  ++  G++   S+A+P+  G+L + +VHE+AH   A+A  +   LG P+ IPSLQVG++G+ITP  +FPR+R   FD++ AGPA G + SLG+L  GL +T   +++  + FP +P  +F SS ++GT     LP  +L   S  V  HPL V+G+T ++V ALN++P GRLDGGR+  A FGR TA ++G LTLLLQ   ++F + SL L WGL+ I  QR  ++P +DEVSE                L TL P P+
Sbjct:  155 GSPLVISEEDISTIREKVLGSTSFYVTSVERGPFRERVIFRGNLRV-DSAVAFEKITESLSKR--GVDQRVRLFLMQD------------RERDNTPVIIALPAGAVPNRSRPLRTLFCIVAALLSMFTSATYSVGVFGLNTEFMQQLAQGEVDGLSRAVPILLGLLSILVVHEVAH--FAVAKARNVKLGTPLIIPSLQVGSYGSITPMRSFPRNRSDLFDIAAAGPAAGFLCSLGSLFAGLSMTSLVSSEVASQFPAIPTGIFKSSILLGTAVQTMLPADVLSQPSIAV--HPLVVVGYTSLLVTALNMIPFGRLDGGRIMQAVFGRTTAGIIGGLTLLLQGFGSVFGDNSLLLIWGLIAIFLQRDAEVPCMDEVSEXXXXXXXXXXXXXXXXLLTLFPLPA 539
[Close]
BLAST of jgi.p|Trimin1|7497 vs. uniprot
Match: W7TYH6_9STRA (Peptidase m50 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYH6_9STRA)

HSP 1 Score: 277 bits (709), Expect = 1.710e-81
Identity = 175/418 (41.87%), Postives = 242/418 (57.89%), Query Frame = 3 
Query:    3 VPPTLLRYVSGAPAIVDEDVEVLQKQVFGMDTFYVTQTERSPLAVLFRGNLRKQDSEAVFAKVQERLQAQPGGLGERVQLLLMPDFTPPSMDD---MDAGEDAQARPI-FLAISTQAQPKQPTAFTYVFSLATLVASAFTAFAYALGTFALNTEFFAKVNDGDLSVASQALPVAAGILGLQLVHELAHRLAALASGKKNLLGPPVFIPSLQVGTFGTITPFTTFPRDRKQAFDVSVAGPALGAVVSLGALIGGLLLTGGATTDALAAFPVVPAALFHSSAIIGTITSIALPQAMLQALSTPVPL------HPLAVIGFTGVIVNALNLMPVGRLDGGRLAAAGFGRRTAAVLGTLTLLLQAASAIFNNYSLQLFWGLVVIIFQRGQDLPALDEVSEVDEGRNTVLLVLLAFALFTLVP 1226
            +P   +R +     ++DEDV  L+ +VF MDTF+VT  +++PLAV + G LRK  SE VF  V+ RLQ   GGL +RVQL L  +  P   +    M  G DA+   + F+A+ST+ +P          SL +L A+A     Y++ TF    +   K+ +  L+    ALPVAAGILG+QL H+LAH L A     K  LG P++IPSLQVGTFG++  F +FP+ RK  FDV++AGP  G  +S  A   G+ +T GA  +  A +P++P ALF SS ++  +      QA+  A    +PL      HPLAVIG  G++  AL  MP+GRLDGGR + + FGR+ A  L    +L Q  S +    +LQLFWG VVIIFQ  Q++ A DE+S VD  R  +LL+L A     L+P
Sbjct:  405 LPREFMRTLESFEPLLDEDVRALRTEVFKMDTFFVTDVDKTPLAVAYMGTLRK-PSEEVFKDVERRLQDLEGGLKDRVQLFLFENPRPQMQEMGGMMGGGGDAENPEVMFMAVSTRVKPLPVGGGQATLSLLSLGATALNCLVYSILTFYSPADIVNKLGEAPLARLDDALPVAAGILGIQLAHDLAHNLMARTKDVK--LGVPIYIPSLQVGTFGSVLRFVSFPKRRKDMFDVALAGPLTGLALSFAAFAAGMAMTQGAAPEISAQWPMLPVALFRSSLMLWQVG-----QALFSADVVNLPLVSQIHVHPLAVIGALGLLTQALQAMPIGRLDGGRASTSVFGRKAATFLSASLVLYQVVSGVVLGNTLQLFWGTVVIIFQNAQEMYARDEISPVDNNRRNLLLLLWAVVAVVLLP 814
[Close]
BLAST of jgi.p|Trimin1|7497 vs. uniprot
Match: M2WYG4_GALSU (Peptidase, M50 family protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WYG4_GALSU)

HSP 1 Score: 267 bits (683), Expect = 1.870e-79
Identity = 170/408 (41.67%), Postives = 241/408 (59.07%), Query Frame = 3 
Query:   39 PAIVDEDVEVLQKQVFGMDTFYVTQTERSPLA--VLFRGNLRKQDSEAVFAKVQERLQAQPGGLGERVQLLLMPDFTPPSMDDMDAGEDAQARPIFLAISTQAQPKQPTA------FTYVFSLATLVASAFTAFAYALGTFALNTEFFAKVNDGDLSVASQALPVAAGILGLQLVHELAHRLAALASGKKNLLGPPVFIPSLQVGTFGTITPFTTFPRDRKQAFDVSVAGPALGAVVSLGALIGGLLLTGGATTDALAA--FPVVPAALFHSSAIIGTITSIALPQAMLQALSTPVPLHPLAVIGFTGVIVNALNLMPVGRLDGGRLAAAGFGRRTAAVLGTLTLLLQAASAIFNNYSLQLFWGLVVIIFQRGQDLPALDEVSEVDEGRNTVLLVLLAFALFTLVPFP 1232
            P I + DV+VL++ VFG DTFYVT  +RSPL   V+F GNLR   ++AV   + E L+ +  GL  RV+L LM D     +D+         RP+F+A+     PKQ  A      F  + S+   V    T   Y +G F L   F  K+  G+     Q LP++ G + + L+HE+ HR+  +AS K   LG P+ +PSLQ+G++GTITP   FP++R   FDV+VAGP +G V S+   + GL L+  +         FP VP+ LF +S ++G++  I  P   L      V +HPL V+G+TG+++NALNL+P+GRLDGGR+    FGR TA+ +G +TLLLQ   A+  N  L LFWG+ V++FQR  DLP  DE++E +  R+ + LVLL   LFTL+PFP
Sbjct:  236 PRIAENDVKVLRESVFGFDTFYVTHLDRSPLGDRVIFHGNLRTDSAKAVRL-LNEALEKK--GLAPRVRLFLMED----PLDNY--------RPVFIAL-----PKQNEALMVNRTFEGIASVFLGVLGTITTLGYGVGVFGLTPVFLDKLKAGNTDEVYQTLPISLGAIAIVLLHEMGHRI--VASMKNIKLGLPLTVPSLQIGSYGTITPLKDFPKNRSDFFDVTVAGPLVGVVTSVTLFVVGLTLSQQSLDSQTIPDWFPQVPSLLFRASMLVGSLAKIIAPY--LDLSHNTVAVHPLTVVGYTGLLINALNLLPIGRLDGGRIVQCIFGRSTASRVGGITLLLQGLGAVLGNSPLLLFWGIFVVLFQREMDLPCEDELTEPNNKRSALGLVLLFVMLFTLIPFP 619
[Close]
BLAST of jgi.p|Trimin1|7497 vs. uniprot
Match: A0A7J7IQ76_9RHOD (Peptidase M50 n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IQ76_9RHOD)

HSP 1 Score: 266 bits (680), Expect = 5.050e-79
Identity = 160/405 (39.51%), Postives = 237/405 (58.52%), Query Frame = 3 
Query:   45 IVDEDVEVLQKQVFGMDTFYVTQTERSPLAVLFRGNLRKQDSEAVFAKVQERLQAQPGGLGERVQLLLMPDFTPPSM--DDM-----DAGEDAQARPIFLAISTQAQPKQPTAFTYVFSLATLVASAFTAFAYALGTFALNTEFFAKVNDGDLSVASQALPVAAGILGLQLVHELAHRL-AALASGKKNLLGPPVFIPSLQVGTFGTITPFTTFPRDRKQAFDVSVAGPALGAVVSLGALIGGLLLTGGATTDALAAFPVVPAALFHSSAIIGTITSIALPQAMLQALSTPVPLHPLAVIGFTGVIVNALNLMPVGRLDGGRLAAAGFGRRTAAVLGTLTLLLQAASAIFNNYSLQLFWGLVVIIFQRGQDLPALDEVSEVDEGRNTVLLVLLAFALFTLVPFPS 1235
            I DED++ LQ++V   DT+ + Q  R+P+ V+ RG LR Q     + + ++ L     GL  R++L LM D   P +  DDM     +  E  +  PI +A+   ++P +   + Y+ +      + FT F Y +G F L+ +F  ++  G++ V ++ LPV+ G +G+ +VHEL HR+  AL + K+ L      IPSLQ+G +G +TP  +FPR+R   FDV+VAGP  G   S+ ALI GL+LT    +  L  FP +P+ LF +S +IG +    LPQ++L      + +HPL V+G+TG++  AL L+PVGR DGGR+  A FGRRTA     + LLLQ  S+I  N  L LF+GL+VI  QR Q++P LDEVSE +  R  +   LL   +  L+PFPS
Sbjct:  222 ISDEDLKTLQQRVLTFDTYMMNQMTRTPIGVVIRGRLRAQSPAEAYERFEKALSET--GLDARIRLFLMEDPRSPFLVEDDMAVENANGAEKTRLPPIVVAMPITSEPPKAGLWQYLLAGVLGATALFTTFGYGVGVFGLSPDFVQQITRGNVDVVTETLPVSIGAIGILVVHELGHRIMGALRNVKQGL---SYVIPSLQIGYYGCVTPLRSFPRNRSALFDVAVAGPVAGLAASMLALIAGLILTAQQGSTPLDWFPQIPSGLFDASLLIGALGKAVLPQSVLS--QPTIAVHPLCVVGYTGLLSQALQLLPVGRTDGGRMMQAAFGRRTAGRASGVALLLQGLSSILGNSPLLLFYGLIVIFLQREQEIPCLDEVSEPNNSRTAMTFFLLLVTVLILLPFPS 619
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|7497 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZIQ3_9STRA2.450e-257100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LMD3_ECTSI1.980e-13050.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZNX7_9STRA4.890e-11767.98Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2V3J2Y1_9FLOR8.900e-8941.29Putative zinc metalloprotease EGY2, chloroplastic ... [more]
A0A5J4Z2W4_PORPP1.260e-8641.23Putative zinc metalloprotease EGY1, chloroplastic ... [more]
R7Q4W8_CHOCR1.170e-8340.40Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S0XJC7_9RHOD3.870e-8239.36Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
W7TYH6_9STRA1.710e-8141.87Peptidase m50 n=2 Tax=Monodopsidaceae TaxID=425072... [more]
M2WYG4_GALSU1.870e-7941.67Peptidase, M50 family protein n=1 Tax=Galdieria su... [more]
A0A7J7IQ76_9RHOD5.050e-7939.51Peptidase M50 n=1 Tax=Cyanidiococcus yangmingshane... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_11contigContig_11:1287038..1295924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|7497|CE7496_106
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006508,GO:0006807,GO:0006950,GO:0006970,GO:0006996,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009314,GO:0009416,GO:0009507,GO:0009536,GO:0009605,GO:0009606,GO:0009628,GO:0009629,GO:0009630,GO:0009651,GO:0009657,GO:0009658,GO:0009668,GO:0009719,GO:0009723,GO:0009725,GO:0009959,GO:0009987,GO:0010027,GO:0010033,GO:0010207,GO:0015979,GO:0016043,GO:0016787,GO:0019538,GO:0019684,GO:0022607,GO:0034622,GO:0042221,GO:0043157,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0048564,GO:0050896,GO:0060359,GO:0061024,GO:0065003,GO:0070011,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901698
Preferred nameEGY1
Descriptionresponse to cation stress
COG categoryM
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0750@1|root,2QUAP@2759|Eukaryota
Evalue1.38e-121
Seed ortholog2880.D8LMD3
Hectar predicted targeting categoryother localisation
TranscriptId7819
TrackFilteredModels1
ProteinId7497
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|7497gene_4828Tribonema minus UTEX_B_3156 geneContig_11 1287038..1295924 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|7497Trimin1|7497|CE7496_106Tribonema minus UTEX_B_3156 polypeptideContig_11 1288083..1295824 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4828_1exon_4828_1Tribonema minus UTEX_B_3156 exonContig_11 1287038..1287117 +
exon_4828_2exon_4828_2Tribonema minus UTEX_B_3156 exonContig_11 1288074..1288199 +
exon_4828_3exon_4828_3Tribonema minus UTEX_B_3156 exonContig_11 1289103..1289206 +
exon_4828_4exon_4828_4Tribonema minus UTEX_B_3156 exonContig_11 1290297..1290424 +
exon_4828_5exon_4828_5Tribonema minus UTEX_B_3156 exonContig_11 1291345..1291529 +
exon_4828_6exon_4828_6Tribonema minus UTEX_B_3156 exonContig_11 1292681..1292801 +
exon_4828_7exon_4828_7Tribonema minus UTEX_B_3156 exonContig_11 1293353..1293486 +
exon_4828_8exon_4828_8Tribonema minus UTEX_B_3156 exonContig_11 1294138..1294311 +
exon_4828_9exon_4828_9Tribonema minus UTEX_B_3156 exonContig_11 1294741..1294839 +
exon_4828_10exon_4828_10Tribonema minus UTEX_B_3156 exonContig_11 1295735..1295924 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_4828UTR5_4828Tribonema minus UTEX_B_3156 five_prime_UTRContig_11 1287038..1287117 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4828CDS_4828Tribonema minus UTEX_B_3156 CDSContig_11 1288083..1288199 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_4828UTR3_4828Tribonema minus UTEX_B_3156 three_prime_UTRContig_11 1295825..1295924 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4828 ID=mRNA_4828|Name=jgi.p|Trimin1|7497|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1341bp|location=Sequence derived from alignment at Contig_11:1287038..1295924+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGGTGCCGCCGACGCTGCTGCGCTACGTGAGCGGCGCGCCCGCGATTGTC
GACGAGGACGTGGAGGTGCTGCAGAAACAGGTTTTCGGCATGGACACGTT
CTACGTGACACAGACGGAGCGCAGCCCTCTGGCGGTGCTCTTCCGCGGCA
ACCTGCGCAAGCAGGACAGCGAGGCGGTGTTCGCCAAGGTGCAGGAGCGG
CTGCAGGCGCAGCCCGGGGGCCTCGGCGAGCGCGTGCAGCTGCTCCTCAT
GCCGGACTTCACGCCGCCGTCGATGGACGACATGGACGCGGGCGAGGACG
CGCAGGCCAGGCCCATCTTCCTCGCCATCAGCACGCAGGCGCAGCCCAAG
CAGCCGACGGCGTTCACGTACGTGTTCAGCCTCGCGACGCTGGTGGCGTC
CGCCTTCACGGCGTTCGCCTACGCACTGGGCACTTTCGCGCTCAACACGG
AGTTCTTCGCCAAGGTCAACGACGGCGACCTCTCAGTCGCCTCGCAGGCG
CTGCCGGTTGCGGCCGGCATCCTGGGGCTGCAGCTGGTACACGAGCTCGC
ACACCGGCTAGCGGCGCTCGCGTCCGGCAAGAAGAACCTGCTGGGGCCCC
CCGTCTTCATCCCCTCTCTCCAGGTGGGCACCTTTGGCACCATCACGCCA
TTCACGACCTTCCCCCGGGACCGCAAGCAGGCATTTGACGTCAGCGTTGC
GGGGCCCGCGCTCGGCGCCGTGGTCTCTCTGGGGGCCCTAATAGGGGGGC
TGCTGCTCACTGGGGGGGCGACCACGGACGCGCTGGCAGCTTTTCCCGTC
GTCCCCGCCGCGCTCTTCCACAGCTCGGCGATCATCGGGACGATCACGAG
CATCGCGCTGCCGCAGGCGATGCTGCAGGCCCTGTCCACCCCCGTCCCCC
TGCACCCCCTGGCCGTGATCGGCTTCACGGGGGTCATCGTCAACGCGCTC
AACCTCATGCCGGTGGGGCGGCTCGATGGGGGCCGCCTCGCCGCCGCGGG
GTTCGGGCGCCGCACCGCCGCCGTGCTGGGCACGCTCACGCTGCTGCTGC
AGGCGGCCAGCGCCATCTTCAACAACTACAGCCTGCAGCTGTTCTGGGGC
CTGGTCGTGATCATCTTCCAAAGGGGTCAGGACCTGCCGGCACTAGACGA
GGTGTCGGAGGTCGACGAGGGGAGAAACACGGTGCTGCTCGTGCTGCTCG
CGTTTGCGCTGTTCACGCTGGTGCCTTTCCCCTCGCTGTAACGCAGCGTC
GTCCGCTGTACAAAGTTTCGCAGGAGCGCTGCTGCTGCGCGCGTTTTTAA
TTGCGCGCCAACACATAACGACGATGATAGACACAGTCAGA
back to top

protein sequence of jgi.p|Trimin1|7497

>Trimin1|7497|CE7496_106 ID=Trimin1|7497|CE7496_106|Name=jgi.p|Trimin1|7497|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=384bp
MDTFYVTQTERSPLAVLFRGNLRKQDSEAVFAKVQERLQAQPGGLGERVQ
LLLMPDFTPPSMDDMDAGEDAQARPIFLAISTQAQPKQPTAFTYVFSLAT
LVASAFTAFAYALGTFALNTEFFAKVNDGDLSVASQALPVAAGILGLQLV
HELAHRLAALASGKKNLLGPPVFIPSLQVGTFGTITPFTTFPRDRKQAFD
VSVAGPALGAVVSLGALIGGLLLTGGATTDALAAFPVVPAALFHSSAIIG
TITSIALPQAMLQALSTPVPLHPLAVIGFTGVIVNALNLMPVGRLDGGRL
AAAGFGRRTAAVLGTLTLLLQAASAIFNNYSLQLFWGLVVIIFQRGQDLP
ALDEVSEVDEGRNTVLLVLLAFALFTLVPFPSL*
back to top

mRNA from alignment at Contig_11:1287038..1295924+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4828 ID=mRNA_4828|Name=jgi.p|Trimin1|7497|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=8887bp|location=Sequence derived from alignment at Contig_11:1287038..1295924+ (Tribonema minus UTEX_B_3156 )
GGGTGCCGCCGACGCTGCTGCGCTACGTGAGCGGCGCGCCCGCGATTGTC
GACGAGGACGTGGAGGTGCTGCAGAAACAGGTACTTCAACTTCACATGCT
GCAGCAGGTACTTTCAACTTGACATCAGCGTCGCGCGCGTGCGCTGCTTA
CATAGCGCTGCTGTCCCATGGCCATGACTGACGAGCTGGTGCAGAAGCAG
GCGCAGGTACTTCAACGCGTGTGCTGCTAGCGTCGCTGATCCATAACTGA
CGCCGCACATCAGTGCTCGTCACCTCATATTCCTGAGAGCGGAAGACCAT
GAGCGCAGGGTGGCTTTCAGCAATGGGATCGTCGGGCAATCTGTTGAGGT
CTTCTCCAAATTCAGTGCTTGCGGTGTGTGCATGTTGTCAGCAGTTCTAT
GACGTGTCAGCAGGAGGACCTGGCATTGTCAACTTCAACTGCTTGCAGCA
CCGAGCTTGAGTCGTGAAAAGCTGCACGTCCTTCTCTCGCATACTGTTAC
GTCGTGCGGCCATGTCTGCTGCATCTTCAGTTTGGCACGACTGCCGTTGA
ACTTCAACAACAATAAAAATTTCCGGTTCGGTTAGCATCTCAAAACAACA
TTTGCCGCCCTGTCGCGGCCGCATGTGTCTGGCATGGACACCTTCAACGT
GACGCAAACAGAGCGCAGCCCTCTGCGACATACGCTGGTGTTGAATGACA
ACAAACACGTACACGCTCGTTTTGGTTGCTGCGACAACTGCCATCCTGCG
CCTGCTGCGCCCACACTTTTAGCTGGAACGTCAAGGAACGTGATACAAGT
ATTGCCAATTGCGGTATTGATGGAAATGCCGCTTGGTGCCCGCTGCGGCC
ACAGGTTTTTGGCATGGACGCCTTCTACGTCACGCAGACACCTGCGACAA
GTGACCTTCGCCGCCTGCTGCTCGCGCACTTCCTCAGCATAATGTCCAAC
TTCAAGGAACATCGACCATGATACCACAAGTGTTGCGCACTTCAGTTTTC
ATGGAAACGCCGCTTGGCACCCCTCTGCTGCTGCAGGTTTTCGGCATGGA
CACGTTCTACGTGACACAGACGGAGCGCAGCCCTCTGGCGGTGCTCTTCC
GCGGCAACCTGCGCAAGCAGGACAGCGAGGCGGTGTTCGCCAAGGTGCAG
GAGCGGCTGCAGGTGCGCACGCTGTCTCCGCTGTGTGTTCATTCCCATTG
TTTTCTTACCTGACTGCTATTCATTGATCGATCATTGTCACAGCGTTGAT
GATCGCCGTCAACTGCAAGTAACGCAAGAAGTAGTGGATCGTTTGTACGG
CGACATGCACAAGCAGGACAGCGAGGCGGTGTTTGCCAAGGTGCAGGAGC
GGCTGCAGGTGCGCGCGCATTGCCGAGCGATGGGCTTGCTGTGTTGAACT
TCGTTTTCTTGCATGACTGCTACTGGTTGATCAGCAAGTGCGCACGTGTC
TCTTGCGTTACCGTACTGGATCAGTACGGTTATCATTGTCATGCGCGCGC
ATGCGCGCAGGTGCAGCCGCAGCTCGCACGAGCGCGTGCAGCCATGCAAT
TGCACCACGAGCGCTGCGTCTTAAGGGTATCACTGGCACAGTTATCAATG
GGCTGTTGAAGTTGCAAGGCCCTCCTTTTCGAAGTCGTTGTAGCCGCCCT
GCTGCATCGGTGCGCAGCCCCAGGTTCGGCGCGCTCCCCCTTGGCATGCT
GCCCCATACCCCTGTCACTCTCGTGCGAGAGGGCGGACCTTTACCGGCTC
GCTGCCACTGCGGAGGGGCGATCACAGCCCGCCCATGCGCTCTCTCAGTG
CGCAGCTGTCGATCGTGCCCCCCCCCCCCCCCCCCGTCTCCCCCCCGTCT
CCCTTGGACCGACGCGCACGGGACGCGGAGCATGGTAATGCCTTCGCTCC
CACACCGTTGAAGTGGCCGCAGCACATGTATCTGGAGCACGCAATCCTGG
CTCCGCTTTTGATAAGGGTAGCGTTGGAGTCAAATTAGGGAGTGCAAGTG
CGGAACGTCACCTGCGAACAACCCCCCCCCCCCCCCCCTCACCATCACCC
CCTAATGCCGTGCAGGCGCAGCCCGGGGGCCTCGGCGAGCGCGTGCAGCT
GCTCCTCATGCCGGACTTCACGCCGCCGTCGATGGACGACATGGACGCGG
GCGAGGACGCGCAGGCCAGGTACGACTTCAACTTTGACTTCACAGTACCT
GCAATGTGTGTACTTCAAGTTTAAGTTGACCAAGTTGGAGCTGACCAACC
CCCGTGCAGCCCCGGAGGACAGTACTGTCTGTGTGTGAGTGTGTGTGTGT
GTGTGTGTTGCCACGTCTAATGCGCTCGAACGCGGGAGCTGCGTAGACCG
ACGCGGCACTCCGCATCTGGCCCGGCAGGCAGCACGAGCGTGACCTATGG
AACTCCTCTTGGCGCATACGCGTCATGTGCGTCGCAGTCGCTGCATCGCC
TCCCCCCGGTTGGCCGCGCATGTTTGTTCTCCAGCAGCGTCGCAGCACGC
CGCTCGCAGCAGCCATGGCAGCGCTCGACACCTGTGTCATCATTGCTCAG
CTCCTGCCGCGGTCTGATCCGCCTGCTTCGACAGCAATGCGCACCGCATT
TCTGAAGCACACCTCAGCCTTCGTTGTGCGCGCCAGGCTTCCGTCCTCAG
CAGCAGCAGCGCAGCTGCAAGAGCAGCAGCGCACCAGTGCCGCATAGCGT
AGCGCTGGCCAGCTGACTAGCAGCCTTTGTCGTGCTCTGCGCCTGACCCA
CCCGCCACGGCAGCGGCGCGCACCGCGCTTCGGAGGGTTAGGGTTAGGGT
TAGGGTCAGGGTTAAACCCAACCCTAACCTCAACTCTGAACCTGCCCTTT
TTCTCGTGCCACACCAGTTAGGCAACGCCGCGTGCAGCGGCGGACACCGC
AATTTGGACGCACTTTTGTAGGGTTGCACAAAAACGTATTCGGCCACACA
AATTCGGCGTATTTGGGGCACATTAAGCAACCAGGAACACGTTTTGAGCG
AACCGCAACAGGAGAACACGCTGCGCAAAGGGCGCGTATTTGTGGGGCAT
CTGTTGACTCTTCTCAATCCCGAGCTTACAGTCCACCACAAGAGGGCAGC
ACTTGAAGTCAGAAATACACTTCAATACGCTTTTGTGCAGCCCTACCTGT
GTTTTCTTTCATGTCACAATGGCCGGGGCGATGCGCACGGCGCCGGCAGT
CGATCGCGTGCGAGCAGCGCTTATGTACCTTCCCCTTGGCTGATTGCTGC
TGCCCGCAGGCCCATCTTCCTCGCCATCAGCACGCAGGCGCAGCCCAAGC
AGCCGACGGCGTTCACGTACGTGTTCAGCCTCGCGACGCTGGTGGCGTCC
GCCTTCACGGCGTTCGCCTACGCACTGGGCACTTTCGGTGCGTACGCATG
AAAGTTCTAGTAGTTGCTTCTGCTTCCCTACGCGTTGGGCTCTTTCAGTG
CGTGCAAAGGGTACGTGTTCCTGCTTCCCTATATTATATGCGCTGGCCAC
TTCCGGTGCGTGCATAGGATACTCGTTCCTTCTTCCCTACGCGCTGGGCA
CTTTCGGTGTGTACAAACGATGCTCATTCCTGTCTCGAGTCGCTTTATGG
CGGCACCAATGATGCACACACTGACATCGAAGAACTGCGCCTGTCTCGTT
GCGGAGCGATGAAGGGACCCGCTGATGTGCAGACAGTCGGTACTTCGCAG
TTGAAGTACAGCGTTGACGCGATGATACCGGCTGCTGGTGGCATCGGCGC
TCGCTGCCTTCCGCCACGCATTGAGCACTGGCGTCGCGAGCTCCCGGCAG
ATTCAATCAGTGCAAATGCCACGTGTTTCTTTACTATCATGCTGCTACAT
GTACGTCACGGCAGCTGGTCCTTCAGACATTGTGAGGCCTTCAACATGGC
CCATTCTGACAGCCGTCGCCTCCACTGCGTGCTCACCGCTCGCCAGCACT
CTCAGTGCGTATAGCACCTGGGGGACATTGCTGAGCGCTGTCAGAAATTC
TGGCCGCCTAACAGGTGCCGGTGCGACGTTGTCTCATGTTGTTCAACCGC
GAGTCACCCCCAGCACCCACTCCCTGCTTCTACCGGAGGGTTTAGTACAG
TAGTACAAGGTTCATGCAGTATGCATGCATACACGAGCCTATGAACACCT
CCACCCACAGTCGCGATGCCCTCGTCATCAGCCGCCGCCGCCGGTGCGTC
TCCCTCATTCCGCTGCCTTGGACATCAGCACTCTTGCCTTTCAGTTCGTT
CGACAACTACAACTCACACGCGAGCACATCTTCTTCTGTTCTTGCGCCGC
CGCGCAGCGCTCAACACGGAGTTCTTCGCCAAGGTCAACGACGGCGACCT
CTCAGTCGCCTCGCAGGCGCTGCCGGTTGCGGCCGGCATCCTGGGGCTGC
AGCTGGTACACGAGCTCGCACACCGGCTAGCGGCGCTCGCGTCCGGCAAG
AAGAACCTGCTGGGGCCCCCCGTCTTCATCCCCTCTCTCCAGGTGCGTTT
CGGTGGGGGTGAGCATCGCGTTTTCGCGCGTGCAGAGTGCTATGGGGCGA
CGCTGTATCATCTGTTGAAGTTCACAATGTTGAAGTACACGAGCTCGCCC
ACTGGCTAGCTGCGCTAGCGTCCGACAAGAAGAACCTGCTGGGACCCCCT
GTCTTCATCCCCTCTCTCCAGGTGCGTTTGGGGGGGGGGGCGGTGGCTGT
TGAAGTTCAATGTTGAAGTTCAATTCCGTACACGAGCTCGCGCACCGGCT
AGCGGCGCTCGTGTTCGGCAAGCAGAATCTGCTGGGACCCCCTATGTTCA
TCCCCTTCCTCCTGGTGCGTTCGAGGGGTGGGGGGCGTGTGAGCATTGAG
CTTTCGTGCGCCCAGAGCTCTACGTGGTGATGCTGTATCATCTGTTGAAG
TTCACAATGTTGAAGTGCATGAGCTCGCGCACCGGCTAGCGATGCTGACG
TCTGGCAAGAAGAACCTGCTGGGACCCCCCGTCTTCAGCCCCTCTCTGCA
GGTGCATTCGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGAGCATCGTGTT
TTCGTGCGCGCAGAGCGCTTCGGGGTGACGCTGTATCATCTGTCGAAGTT
CACAATGTTGAAGTACACGAGCTCGCGCACTGGCTAGCGGCGCTGACGTC
TAGCAAGAAGAACCTGCTGGGGACCCCCCGTCTTCATCCCCTCTCTCCAG
GTGCGTTCCGGGGGGGGGGGGGGGGGGCGTGTGAACATGGCGTTTTCGCG
CGCGCAAAGAGCGCTACGCTGTAACATCTGCTGAAGGTCAATGTGGAAGT
TCAAATCCGCATTTGTGCACAGCGCCGAATTAACCAGACGCAAGGGCTTT
GCTCCAGGCGCGATTCGCAGCATGCTGCGCGATTCACGGTGGTCGCTTTG
CAGTGCGGTACATGCTGAGTACACTAGCCGTACACGGCTGCACTCGAGAC
CGGTCCCCACGCAGGCTGCAACCGCATCGTCCTCGCACGCGCCTGTCTCG
ATCCGCTGGCAGCTGCCTGCGCTCAACGGCTCAAGTGTATGCTGCTACGA
AGAGCGTAACGAATGAGTAGTCTGTCCCATTGCTGACGGCGAAACACTGT
CGCCCCCCCCCCCCCACCCCTGCCCTCCCCTTGTCCCTGACAGGTGGGCA
CCTTTGGCACCATCACGCCATTCACGACCTTCCCCCGGGACCGCAAGCAG
GCATTTGACGTCAGCGTTGCGGGGCCCGCGCTCGGCGCCGTGGTCTCTCT
GGGGGCCCTAATAGGTGCGTACTAGCTTCCAGACTGCCTGGTGCCGTGAT
TCATGATACTTCACTGCCAGCCAAACTAGATTCAGCATGCCATTGCCATG
TCAAATGCTCCACGTGCCGTGGTCTCTCTGGGGGCCCTAATAGGTTCTCA
ACTCTAAGGCGGCGGCTCCCACCCGATCACCGGCCGTGTTGTATGTGGTT
GGTGAGGCAGGGACATTGTCGATGGTCGTTTTTGCATTGCGCGTCCCATT
CAAAAAGCTGGTGATCTCGACGCACTTGCTCATTAATCCATGAATTTCAT
CCATCCGTTTCAATCATTACAGCAGTGTCCATTTTTTCATGGATTTCACC
CATTCATTTCATTCAACCACAGCGGGGCTGCTGCTCATGGGGGGGGGGGG
GAGGGGGGGGGTCGACCGCGGAGGCGCTGGCGGCATTTATTCATGCATTT
CATCCATTCGTTTCATTTGATTCAGGGGGCTGCTGCTCGCGGGGTGGGCG
ACCGCGGACGCGGTGGCAGTGTTCACTTATTCATGAATTTCATCCATCCC
TTTTATTCAATTCAGGGGGGCTGCTGCTCACTGGGGGGGCGACCACGGAC
GCGCTGGCAGCTTTTCCCGTCGTCCCCGCCGCGCTCTTCCACAGCTCGGC
GATCATCGGGACGATCACGAGCATCGCGCTGCCGCAGGCGATGCTGCAGG
TGCGTCACAGTTGAAGTGGACCTTGATCGATCCTGTGTGTAATGAAAGCT
TTCGGGGCTCTGCTCTGGTGCAGTGTGGTTGCGCCATCGCAGCTGCGGGG
GCGCGCTGCCCCTGTCACCATTGATGCACTCTGCCTCCGCCAAGGGCCGC
CCATGTCAGGCCTCTTTCTTTGTCAGCGGCCGTTCCATTCTCATTCGGCA
TGGCGCAGGCGTCGGCATGGCGCAGGCGGTGCAACTTGTTCGACGCTGGG
GTAGGGCGACACGGCACAGGAAGAATGCGTGCCCGTGCGCCGTCCTGTTC
AGGCCCTGCTTCATCGCCATGACCAGCGGCGTGAGCGGCATCGACTGCTT
TGCATTTCGGTTGGGGGTTCAGGGGGTCCTGAGCACCGCTGAGTGCTGCC
TGATCCCCCATGCCGCCGCCGCCGCCGCCGCCGCCGCCGGCGGCGCAGGC
CCTGTCACTCCCGCACCAATGCTGCAGGTGCGTCACCTTTTAAAGGCGAC
TCACAGTCGAAGTTGATGCCATTCTGAGCGCTGTGACGTCCATGCACCAC
AAGTGGTACGCTCTGACGCGCCGCCGCCGCCGTCAGATATAATTTCAGTA
TGCTGAGCACTGCTGAGCCCTGTGCGACGTCCGCGCCGCCGCCGCCGCAG
GCCCTGTCCACCCCCGTCCCCCTGCACCCCCTGGCCGTGATCGGCTTCAC
GGGGGTCATCGTCAACGCGCTCAACCTCATGCCGGTGGGGCGGCTCGATG
GGGGCCGCCTCGCCGCCGCGGGGTTCGGGCGCCGCACCGCCGCCGTGCTG
GGCACGCTCACGCTGCTGCTGCAGGTGCGTACTGAGCAGTCGGTGGCTGC
ACTTTCCCGCGCCACGTTGTGTGCGCTTCGAATAGAAAGGGGAGTTGCCG
CGTGCGGAATGTAGTGGCAAGGCCGTCTTGCGCGTTCTCGGGCACCCTCG
AGCTGCTGCCGCAGGTACTGCTGCTGCAGGTACGTACGGCGCAGTCTGTG
GCGCGGTGCCGCTGCAGTGTTCCGTGCTCTCGCTCGCGTCAAACCGGCAT
CGACTTGTCGTCAGTGCGTGGTGAGCGACGTTTGGCTGGTGCCGCGTACG
GTGTACCACTACACAGTAGTTTTCGCCAGGGGGCTGGAGACTACAAGATT
GGGTACGGCGGTGTGCATACGCTGGCCAGACTCTCCCTGAGCCAGGTGGC
CGGTTGCCTCAGATGCGCCCCGCCGTTGCACTCTGCTGTGTTGCCGTGCG
CAGGCGGCCAGCGCCATCTTCAACAACTACAGCCTGCAGCTGTTCTGGGG
CCTGGTCGTGATCATCTTCCAAAGGGGTCAGGACCTGCCGGCACTAGACG
AGGTATGTACTTCTATGTACATTGTGGTGCTGTACTGTACTGTACTGTAC
TGTGCTGTCCGGTACGTGTCAATGGTGCTGCACATGTTTCCCAGTTTTCA
AGAGTGCAGGTAGGTTTGTAGTTCTGCACATTGCAGTCGGTTATGCTGTC
GTGATCATCTTGCAAGGGGGTCAGGACGTGGCGGCACTGGACGAGGTATG
TTTTCATTGGTGGCCGTGCTGTACTGTGTACTGTACTGTGCTGTAGTGTC
TAGTAGATGCGTCGATTGTGAACACGTTCTCCTGTCGATTGTGCTGAACA
CATGATCCTGCATTCACCAGTGTAGGTTTTGACGTCTGCCCCTTGTGGTC
GTGCTGTACAGCACATGTGCCAGGCCTGCCCGGCGCTTGGCGTCGCGAGC
TGCTCACGTGTGATACGAAGGCATGTATGTCGATCGTGGCCGTACGGTTT
GGCGCGTGTGTGCATGCCGCTGCGCATTGAAATACGCCACCATGCTTGCT
GTGCGAGCTCTTTGCTGTGAACAAAGCACATGCGCATGGAGACGCTTTCA
AGGTGTTCACAAAGACGCATGCAGATTCTGGCTTGCAAGTCCATGAACAC
CCACCATCTGGGCTTTTCCGCGCCCTGAGCGAGAATCGACAAATAGTACA
TGCGCACGCGGACGAGGGGGGGGGAGATGCCATTTGCCGACGTCTACGTC
TAAAAGTGATCGTCTATGCCCATTGCTCCACTTTCGGGCTTTCACGACAC
ACATTTGCATGCTAGTAGCAAGCTGGGCCCATCATCTGGGCTTTCGTGCG
CCCTTAGCGAGAATTCACAACAAATACACGCACGCATCATATGCAGGGCA
AGACTGACCCTGCGCACCACCGTCCTCTCGGCCGCCACCGCGCGCAGGTG
TCGGAGGTCGACGAGGGGAGAAACACGGTGCTGCTCGTGCTGCTCGCGTT
TGCGCTGTTCACGCTGGTGCCTTTCCCCTCGCTGTAACGCAGCGTCGTCC
GCTGTACAAAGTTTCGCAGGAGCGCTGCTGCTGCGCGCGTTTTTAATTGC
GCGCCAACACATAACGACGATGATAGACACAGTCAGA
back to top

Coding sequence (CDS) from alignment at Contig_11:1287038..1295924+

>mRNA_4828 ID=mRNA_4828|Name=jgi.p|Trimin1|7497|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1152bp|location=Sequence derived from alignment at Contig_11:1287038..1295924+ (Tribonema minus UTEX_B_3156 )
ATGGACACGTTCTACGTGACACAGACGGAGCGCAGCCCTCTGGCGGTGCT
CTTCCGCGGCAACCTGCGCAAGCAGGACAGCGAGGCGGTGTTCGCCAAGG
TGCAGGAGCGGCTGCAGGCGCAGCCCGGGGGCCTCGGCGAGCGCGTGCAG
CTGCTCCTCATGCCGGACTTCACGCCGCCGTCGATGGACGACATGGACGC
GGGCGAGGACGCGCAGGCCAGGCCCATCTTCCTCGCCATCAGCACGCAGG
CGCAGCCCAAGCAGCCGACGGCGTTCACGTACGTGTTCAGCCTCGCGACG
CTGGTGGCGTCCGCCTTCACGGCGTTCGCCTACGCACTGGGCACTTTCGC
GCTCAACACGGAGTTCTTCGCCAAGGTCAACGACGGCGACCTCTCAGTCG
CCTCGCAGGCGCTGCCGGTTGCGGCCGGCATCCTGGGGCTGCAGCTGGTA
CACGAGCTCGCACACCGGCTAGCGGCGCTCGCGTCCGGCAAGAAGAACCT
GCTGGGGCCCCCCGTCTTCATCCCCTCTCTCCAGGTGGGCACCTTTGGCA
CCATCACGCCATTCACGACCTTCCCCCGGGACCGCAAGCAGGCATTTGAC
GTCAGCGTTGCGGGGCCCGCGCTCGGCGCCGTGGTCTCTCTGGGGGCCCT
AATAGGGGGGCTGCTGCTCACTGGGGGGGCGACCACGGACGCGCTGGCAG
CTTTTCCCGTCGTCCCCGCCGCGCTCTTCCACAGCTCGGCGATCATCGGG
ACGATCACGAGCATCGCGCTGCCGCAGGCGATGCTGCAGGCCCTGTCCAC
CCCCGTCCCCCTGCACCCCCTGGCCGTGATCGGCTTCACGGGGGTCATCG
TCAACGCGCTCAACCTCATGCCGGTGGGGCGGCTCGATGGGGGCCGCCTC
GCCGCCGCGGGGTTCGGGCGCCGCACCGCCGCCGTGCTGGGCACGCTCAC
GCTGCTGCTGCAGGCGGCCAGCGCCATCTTCAACAACTACAGCCTGCAGC
TGTTCTGGGGCCTGGTCGTGATCATCTTCCAAAGGGGTCAGGACCTGCCG
GCACTAGACGAGGTGTCGGAGGTCGACGAGGGGAGAAACACGGTGCTGCT
CGTGCTGCTCGCGTTTGCGCTGTTCACGCTGGTGCCTTTCCCCTCGCTGT
AA
back to top