mRNA_470 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|157382
Unique NamemRNA_470
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|157382 vs. uniprot
Match: A0A836CE96_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE96_9STRA)

HSP 1 Score: 244 bits (624), Expect = 4.020e-82
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1 
Query:    1 VTIQKPGTIGLGVLWHTNATDLAAVTLSDSADGSWGFTREYTEADVGTVLGICVNWSALPMMRLLDAAGAEVASVRRVRGTVYPAVTVRGGAACDVRFGGFEGVVPRKCTALTRVKDMI 357
            VTIQKPGTIGLGVLWHTNATDLAAVTLSDSADGSWGFTREYTEADVGTVLGICVNWSALPMMRLLDAAGAEVASVRRVRGTVYPAVTVRGGAACDVRFGGFEGVVPRKCTALTRVKDMI
Sbjct:    1 VTIQKPGTIGLGVLWHTNATDLAAVTLSDSADGSWGFTREYTEADVGTVLGICVNWSALPMMRLLDAAGAEVASVRRVRGTVYPAVTVRGGAACDVRFGGFEGVVPRKCTALTRVKDMI 119
[Close]
BLAST of jgi.p|Trimin1|157382 vs. uniprot
Match: D8LCT7_ECTSI (B30.2/SPRY domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCT7_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 2.070e-10
Identity = 52/133 (39.10%), Postives = 69/133 (51.88%), Query Frame = 1 
Query:    1 VTIQKPGTIGLGVLWHTNATDLAAVTLSDS--ADG--SWGF-TREYTEADV---GTVLGICVNWSALPMM---RLLDAAG-AEVASVRRVRGTVYPAVTVRGGAACDVRFGG--FEGVVPRKCTALTRVKDMI 357
            +T+   GT+ LGV       D +   LS S   DG  +WGF T +   A     G V+GI ++++ LPM+   R  D  G  +  +V R+RGTVYPA  V GGAA  V F G       PRKC AL   +DM+
Sbjct:    1 MTLPPGGTVSLGVSRRPPPDDASGELLSRSKLGDGEKTWGFCTSDGGAAGTLKEGDVIGIALDFTDLPMLFFTRGGDPLGEGDELAVMRIRGTVYPAFGVGGGAALSVAFAGDSLAHTPPRKCEALIVGQDMM 133
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157382 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CE96_9STRA4.020e-82100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LCT7_ECTSI2.070e-1039.10B30.2/SPRY domain-containing protein n=1 Tax=Ectoc... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:1740802..1741161 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|157382|e_gw1.3.381.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionConcanavalin A-like lectin/glucanase domain
Ec32 orthologEc-07_006850.1
TranscriptId157704
TrackFilteredModels1
ProteinId157382
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157382gene_470Tribonema minus UTEX_B_3156 geneContig_3 1740802..1741161 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_470_1exon_470_1Tribonema minus UTEX_B_3156 exonContig_3 1740802..1741161 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_470CDS_470Tribonema minus UTEX_B_3156 CDSContig_3 1740802..1741161 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157382Trimin1|157382|e_gw1.3.381.1Tribonema minus UTEX_B_3156 polypeptideContig_3 1740802..1741161 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_470 ID=mRNA_470|Name=jgi.p|Trimin1|157382|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=360bp|location=Sequence derived from alignment at Contig_3:1740802..1741161- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTCACCATCCAAAAACCGGGCACGATCGGCCTAGGCGTCCTCTGGCACAC
CAACGCCACCGACCTCGCCGCCGTGACCCTCTCCGACAGCGCCGACGGCA
GCTGGGGGTTCACGCGCGAGTACACGGAAGCGGACGTGGGAACGGTCCTG
GGAATCTGCGTAAACTGGTCCGCGCTGCCCATGATGCGACTGTTGGACGC
AGCGGGGGCGGAGGTGGCCAGCGTGCGGCGTGTGCGTGGCACTGTGTACC
CGGCGGTGACTGTGCGCGGCGGCGCGGCGTGCGATGTGCGTTTCGGGGGC
TTTGAGGGGGTGGTTCCGCGCAAGTGCACGGCGCTCACGCGCGTCAAGGA
CATGATCTGA
back to top

protein sequence of jgi.p|Trimin1|157382

>Trimin1|157382|e_gw1.3.381.1 ID=Trimin1|157382|e_gw1.3.381.1|Name=jgi.p|Trimin1|157382|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=120bp
VTIQKPGTIGLGVLWHTNATDLAAVTLSDSADGSWGFTREYTEADVGTVL
GICVNWSALPMMRLLDAAGAEVASVRRVRGTVYPAVTVRGGAACDVRFGG
FEGVVPRKCTALTRVKDMI*
back to top

mRNA from alignment at Contig_3:1740802..1741161-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_470 ID=mRNA_470|Name=jgi.p|Trimin1|157382|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=360bp|location=Sequence derived from alignment at Contig_3:1740802..1741161- (Tribonema minus UTEX_B_3156 )
GTCACCATCCAAAAACCGGGCACGATCGGCCTAGGCGTCCTCTGGCACAC
CAACGCCACCGACCTCGCCGCCGTGACCCTCTCCGACAGCGCCGACGGCA
GCTGGGGGTTCACGCGCGAGTACACGGAAGCGGACGTGGGAACGGTCCTG
GGAATCTGCGTAAACTGGTCCGCGCTGCCCATGATGCGACTGTTGGACGC
AGCGGGGGCGGAGGTGGCCAGCGTGCGGCGTGTGCGTGGCACTGTGTACC
CGGCGGTGACTGTGCGCGGCGGCGCGGCGTGCGATGTGCGTTTCGGGGGC
TTTGAGGGGGTGGTTCCGCGCAAGTGCACGGCGCTCACGCGCGTCAAGGA
CATGATCTGA
back to top

Coding sequence (CDS) from alignment at Contig_3:1740802..1741161-

>mRNA_470 ID=mRNA_470|Name=jgi.p|Trimin1|157382|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=360bp|location=Sequence derived from alignment at Contig_3:1740802..1741161- (Tribonema minus UTEX_B_3156 )
GTCACCATCCAAAAACCGGGCACGATCGGCCTAGGCGTCCTCTGGCACAC
CAACGCCACCGACCTCGCCGCCGTGACCCTCTCCGACAGCGCCGACGGCA
GCTGGGGGTTCACGCGCGAGTACACGGAAGCGGACGTGGGAACGGTCCTG
GGAATCTGCGTAAACTGGTCCGCGCTGCCCATGATGCGACTGTTGGACGC
AGCGGGGGCGGAGGTGGCCAGCGTGCGGCGTGTGCGTGGCACTGTGTACC
CGGCGGTGACTGTGCGCGGCGGCGCGGCGTGCGATGTGCGTTTCGGGGGC
TTTGAGGGGGTGGTTCCGCGCAAGTGCACGGCGCTCACGCGCGTCAAGGA
CATGATCTGA
back to top