mRNA_4691 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|166695
Unique NamemRNA_4691
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|166695 vs. uniprot
Match: A0A835YVP0_9STRA (EXS family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVP0_9STRA)

HSP 1 Score: 750 bits (1937), Expect = 2.400e-272
Identity = 417/417 (100.00%), Postives = 417/417 (100.00%), Query Frame = 1
Query:    1 MEELYRLCLRVPIVLIVFGCLCGVVMLALDQLGIDYAYHAKKASKLGECHQAALRLRCRETSETVCVLTVASCASPLPLPADKSRSAALQLVLGSGFLLALLLLCLRIGELAQIMPNVAVGAFAIMVGLMLLVPMQSAMRDGLNFLLSTVGRVLCPSSDVPFVEVLVADALCSLSRVFSDAGLAILVLAATWTSSAPPSQVTRVFVTATLACLPAVLRVRQCAILHFAEPDPARRRLHALNIGKYLSTLPPVLLGALHALAPPALDGVPLATAAAAAAAFNTAYCLAWDVRMDWGLGDLGAKAAGLRPTLLLGAHAPYYAAIAADAALRCAWVRPLAALGYALALTDLTLVLELVEVCRRCMWAVLRLEWEAVQHAPHYHXXXXXXXXXXXXXXXXGAEEGGSSGSGADGEKLAGGV 1251
            MEELYRLCLRVPIVLIVFGCLCGVVMLALDQLGIDYAYHAKKASKLGECHQAALRLRCRETSETVCVLTVASCASPLPLPADKSRSAALQLVLGSGFLLALLLLCLRIGELAQIMPNVAVGAFAIMVGLMLLVPMQSAMRDGLNFLLSTVGRVLCPSSDVPFVEVLVADALCSLSRVFSDAGLAILVLAATWTSSAPPSQVTRVFVTATLACLPAVLRVRQCAILHFAEPDPARRRLHALNIGKYLSTLPPVLLGALHALAPPALDGVPLATAAAAAAAFNTAYCLAWDVRMDWGLGDLGAKAAGLRPTLLLGAHAPYYAAIAADAALRCAWVRPLAALGYALALTDLTLVLELVEVCRRCMWAVLRLEWEAVQHAPHYHXXXXXXXXXXXXXXXXGAEEGGSSGSGADGEKLAGGV
Sbjct:    1 MEELYRLCLRVPIVLIVFGCLCGVVMLALDQLGIDYAYHAKKASKLGECHQAALRLRCRETSETVCVLTVASCASPLPLPADKSRSAALQLVLGSGFLLALLLLCLRIGELAQIMPNVAVGAFAIMVGLMLLVPMQSAMRDGLNFLLSTVGRVLCPSSDVPFVEVLVADALCSLSRVFSDAGLAILVLAATWTSSAPPSQVTRVFVTATLACLPAVLRVRQCAILHFAEPDPARRRLHALNIGKYLSTLPPVLLGALHALAPPALDGVPLATAAAAAAAFNTAYCLAWDVRMDWGLGDLGAKAAGLRPTLLLGAHAPYYAAIAADAALRCAWVRPLAALGYALALTDLTLVLELVEVCRRCMWAVLRLEWEAVQHAPHYHXXXXXXXXXXXXXXXXGAEEGGSSGSGADGEKLAGGV 417          
BLAST of jgi.p|Trimin1|166695 vs. uniprot
Match: D7G030_ECTSI (EXS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G030_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 1.080e-54
Identity = 149/380 (39.21%), Postives = 202/380 (53.16%), Query Frame = 1
Query:    4 EELYRLCLRVPIVLIVFGCLCGVVMLALDQLGIDYAYHAKKASKLGECHQAALRLRCRETSETVCVLTVASCASPLPLPADKSRSAALQLVLGSGFLLALLLLCLRIGELAQIMPNVAVGAFAIMVGLMLLVPMQS-AMRDGLNFLLSTVGRVLCPSSDVPFVEVLVADALCSLSRVFSDAGLAILVLAATWTSSAPPSQVTRVFVTATLACLPAVLRVRQCAILHFAEPDPARRRLHALNIGKYLSTLPPVLLGALHAL----APPALDGVPLATAAAAAAAFNTAYCLAWDVRMDWGLGDLGAKAAGLRPTLLLGAHAP--YYAAIAADAALRCAWVRPLAALGYALALTDLTLVLELVEVCRRCMWAVLRLEWEAVQ 1122
            EELY   +RVP+VL VF  L G+V+L L  L I+++   +KAS          RL   +  +T      +    P  +P   S     Q+V  +   L +LL C+    + ++ P VAVG F  ++G  LLVP+Q+ ++R       +++  V  P++DV F EVLVADAL SLSRVF+D  +  L++A  W    P      ++     A  P  +RVRQC +    E DP R+ L A+N+GKYLS  P + L    A+        L GV    A  AAA  N+ Y  AWDV+MDWGLG  G++  GLR TLL+   AP  YY A+A D  LR  WV  LA   +     D+ L LELVE+ RR MW V RLEWE +Q
Sbjct:    8 EELYLASVRVPLVLAVFLGLWGLVILVLQALQIEFSSVLRKAS--------GPRLATEDQGDT------SGKGKPTRVPTPPSWR---QVVSTAAGFLGVLLACIHGSRMLRVPPTVAVGGFYFILGGALLVPLQAPSVRQHTALFFTSLAGVFFPATDVHFAEVLVADALTSLSRVFADVAVTFLLVAKGWGMRYPGWAF--LYTPCVFASFPYWVRVRQCVMQLTYEVDPKRKLLLAINVGKYLSAFPVIWLTGYQAMRHYDGAAYLPGV--GKAIIAAALLNSVYSFAWDVKMDWGLGQRGSRRWGLRNTLLICHEAPWPYYVAVAVDLVLRLTWVARLAEERFRS--VDMVLTLELVEILRRSMWNVFRLEWECIQ 364          
BLAST of jgi.p|Trimin1|166695 vs. uniprot
Match: W7TLW9_9STRA (Protein-er retention protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLW9_9STRA)

HSP 1 Score: 110 bits (276), Expect = 6.970e-23
Identity = 87/243 (35.80%), Postives = 117/243 (48.15%), Query Frame = 1
Query:  451 GRVL----CPSSDVPFVEVLVADALCSLSRVFSDAGLAILVLAATWTSSAPP--SQVTRVFVTATLACLPAVLRVRQCAILHFAEPDPARRRLHALNIGKYLSTLPPVLLGALHALAPPALDGVPLATAAAAAAAFNTAYCLAWDVRMDWGLGDLGAKAA--------------GLRPTLLLGAHAPYYAAIAADAALRCAWVRPLAALGYALALTDLTLVLELVEVCRRCMWAVLRLEWEAV 1119
            GRVL     P +++ F+EVLV D L SLS+VF + GL  +   AT  S +P     V+       LA  P +LR+RQC +          R L +LNI KY S++P + L  L A   P      +          N+ Y   WDV MDWGLG +    A              GLRPTLL G+   YYAAI  D  LR  WV       + L+     L++E +EV RR +W++ R+EWE +
Sbjct:  175 GRVLWLVVLPGTEIHFLEVLVGDILTSLSKVFFEVGLTCV---ATLLSLSPGLFRIVSPDIFPTLLASTPFILRIRQCVVQRRGTASGKARFLVSLNILKYCSSIPGLWLPLLLA---PHYSTYQIERVLLVVLLVNSLYSFLWDVIMDWGLGHVKLTGAPKKGGGGAVRLRHWGLRPTLLFGSAGSYYAAIGLDLVLRLVWVLKYVNFDHRLSYDKFMLLIECLEVLRRGIWSIYRIEWECL 411          
BLAST of jgi.p|Trimin1|166695 vs. uniprot
Match: A0A1V9YPV6_9STRA (Inositol monophosphatase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YPV6_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.710e-21
Identity = 87/233 (37.34%), Postives = 119/233 (51.07%), Query Frame = 1
Query:  466 PSSDVPFVEVLVADALCSLSRVFSDAGLAILVLAATWTSSAP---PSQVTRVFVTATLACLPAVLRVRQCAILHFAEPDPARRRLHALNIGKYLSTLPPVLLGALHAL--APPA------LDGVPLATAAAAAAAFNTAYCLAWDVRMDWGLGDLGAKAAGLRPTLLLGAHAPYYAAIAADAALRCAWVRPLAALGYA---LALTDLTLVLELVEVCRRCMWAVLRLEWEAVQ 1122
            P ++ PFVEV +AD L S+S+VF D  + +L+L  +          S++ R  +    A +P ++R  QC I +   P    + LH LN  KY + L  + +GAL A+  A PA      LDG    T    AA  N+ Y L WDV MDWGLG   A+A  LR  LL      YY AI  D  LR  W    A   +A   +   +  +V+E+ EV RRCMW  LR+EW+ V+
Sbjct:  135 PLTETPFVEVFLADGLTSMSKVFHDIAVGVLMLMESIDGRETIMYTSKMKRHPMPYLCAAMPYLIRATQCLISYKRAPLANDKFLHLLNTFKYGTGLCVIFVGALPAVLGASPATTSFFVLDGQ---TMFLLAACCNSLYSLFWDVVMDWGLGQPEAEARYLRHPLLYRRPVVYYVAIGLDCGLRILW----ATSNWAWVDIVGAEFKVVMEVAEVLRRCMWNCLRVEWQCVK 360          
BLAST of jgi.p|Trimin1|166695 vs. uniprot
Match: A0A7S2WQN9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WQN9_9STRA)

HSP 1 Score: 105 bits (263), Expect = 2.370e-21
Identity = 98/305 (32.13%), Postives = 141/305 (46.23%), Query Frame = 1
Query:  355 AVGAFAIMVGLMLLV-PMQSAMRDGLNFLLSTVGRVLCPSSD--VPFVEVLVADALCSLSRVFSDAGLAILVLAA---------TWTSSAPPSQVTRVFVTATL----ACLPAVLRVRQCAILHFAEPDPARRRLHALNIGKYLSTLPPVLLGALHALAPPA----------------LDGVP------------------LATAAAAAAAFNTAYCLAWDVRMDWGLGDLGA-KAAGLRPTLLLGAHAPYYAAIAADAALRCA--WVRPLAALGYALALTDLTLVLELVEVCRRCMWAVLRLEW 1110
            A+ AF + +  +L+V P+    R  +   + T+ RVL PS++  VPFVEV VADA+ SLS+VF+D GL + VL +         T   S P +Q+    V+  L    AC+P ++RVRQ  +L     D   R  HA+N+ KYL   P + L A  A  P A                +DG P                  L  A    +  +      WDVRMDWGL      +   LR TLL  +   YY+ I  +  LR A  ++     +   L+  D   V+E++E+ RR +W V R+EW
Sbjct:  130 AIFAFYVAIPFILVVLPVVGFGRGNIFPYIRTLRRVLWPSAEENVPFVEVFVADAMTSLSKVFADTGLVLAVLVSRAVAFDVNNTQFLSKPTAQLVSTVVSGCLPPFLACMPYIIRVRQLVVLRLWSEDGDERWQHAMNVIKYLFNFPTIWLAAWLATLPEAPAPPMAAYHEAGSWATMDGGPGDVLVHGEALRLSIMRAVLEEAVVFCSLSSLFLSFIWDVRMDWGLAQTATVRQCCLRDTLLFRSQWIYYSGICGNLILRLANTYIGLTGHVPAFLSRIDAAFVMEVLEILRRTLWCVFRIEW 434          
BLAST of jgi.p|Trimin1|166695 vs. uniprot
Match: A0A7S0AUH6_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AUH6_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 2.820e-18
Identity = 83/255 (32.55%), Postives = 125/255 (49.02%), Query Frame = 1
Query:  454 RVLCPSSD---VPFVEVLVADALCSLSRVFSDAGLAILVLAATWTSSAPPSQVTRVFVTATLACLPAVLRVRQCAILHFA---EPDPARRRLHALNIGKYLSTLPPVLLGALHALAPPALDGVPLATAAAAAAAFNTAYCLAWDVRMDWGL--------------GDLGAKAAG--------LRPTLLLGAHAPYYAAIAADAALRCAWVRPLAALGYALALTDLTLVL--ELVEVCRRCMWAVLRLEWEAVQHA 1128
            R  C + D   VPF++V VADA+CSLS+VF D G+ +L LA+ +    PPS V  + + +  A  P V R RQC I+H     + DP R + H LN  KY S+L P+ + A        +    +          N+ YCLAWD+ MDWG+              G  G    G        LRP L  G  A  +  + +D  LR AW+  L  + + +   + + +L  +++E  RR +W +LR+EWE ++ +
Sbjct:    8 RCFCLTGDLRPVPFIDVFVADAMCSLSKVFFDWGM-MLHLASHYPDPVPPS-VHAIIIPSMAASWPYVCRARQCLIMHEVGRRKNDPKRYQ-HLLNALKYSSSLFPLCVSAYQKTLDDPVKAAQVDKILIILIVINSLYCLAWDIIMDWGMMDGVFADSSCVPSGGSSGGAIVGSKGWSHHCLRPRLRFG-FAMSFGILLSDCVLRFAWL--LRFVEHVVFPNNGSYILWTQILEAFRRGIWNLLRVEWENIKQS 256          
BLAST of jgi.p|Trimin1|166695 vs. uniprot
Match: A0A485KLS0_9STRA (Aste57867_8887 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KLS0_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 7.560e-18
Identity = 86/257 (33.46%), Postives = 120/257 (46.69%), Query Frame = 1
Query:  454 RVLCPSSDVPFVEVLVADALCSLSRVFSDAGLAILVLAATWTS------SAPPSQVTRVFVTATLACLPAVLRVRQCAILHFAEPDPARRRLHALNIGKYLSTLPPVLLGALHALAPPALDGV-PLATAAAAAAAFNTAYCLAWDVRMDWGLG------DLGAKA-----------------AGLRPTLLLGAHAPYYAAIAADAALRCAWVRP----LAALGYALALTDLTLVLELVEVCRRCMWAVLRLEWEAVQ 1122
            ++  P ++ PFVEV +AD L S+S++F D  +A L+L   W S          +++    V    A  P  +R  QC I +        + LH LN  KY + L  +L+GAL  L  P+ + +    T     A  N+ Y L WDV MDWGLG      D+                     A LR TLL      YY A+AADA LR  WV      +  +G      D  +V ++ EVCRRCMW +LR+EW+ V+
Sbjct:  131 QIYIPPTETPFVEVYIADGLTSMSKIFGDMAVATLML---WYSIHGVHDDMYQTKMKHHLVPYLAAASP--IRAIQCLISYHRATVVNDKFLHVLNTFKYGTGLCVILVGALPVLFGPSPEQLLDTDTLFLLCACCNSLYSLFWDVVMDWGLGQPPNAHDVSEDEEDHRSPPLWNASKMNTHAYLRHTLLYRPKHVYYVAMAADAMLRVLWVTSNWHWVDVVG-----ADFKMVAQVAEVCRRCMWNLLRVEWQCVK 377          
BLAST of jgi.p|Trimin1|166695 vs. uniprot
Match: A0A2P5I371_9PEZI (EXS family protein n=1 Tax=Diaporthe helianthi TaxID=158607 RepID=A0A2P5I371_9PEZI)

HSP 1 Score: 94.0 bits (232), Expect = 1.440e-17
Identity = 88/275 (32.00%), Postives = 129/275 (46.91%), Query Frame = 1
Query:  373 IMVGLMLLVPMQS--AMRDGLNFLLSTVGRVLCPSSDVP----FVEVLVADALCSLSRVFSDAGLAILVLAATWTSSA--PPSQVTRVFVTATLACLPAVLRVRQCAILHFAEPDPARRR------LHALNIGKYLSTLPPVLLGALHALAPPALDGVP--LATAAAAAAAFNTAYCLAWDVRMDWGL-----GDLGAKAAGLRPTLLLGAHAPYYAAIAADAALRCAWVRPLA-ALGYALALTDLTLVLELVEVCRRCMWAVLRLE--WEAVQH 1125
            +M+G +LL P Q+  A   G + LL T+ R+       P    F + L+ADA  SL  +++D  L + +L +  T S   P  Q  R  V      +P ++R RQC +  F      +         H LN GKY+S++P ++   L   A     G+P  +      + + NTAY   WD+  DW L     G     A GLR  LLL   A YY AI  D  LRC W+  ++ ++   L  +    +L  +E+ RR MWA+ R+E  W  VQH
Sbjct:   21 LMLGSLLLAPPQNFAASCGGRDRLLETLRRISLGGLAQPHHGKFADTLLADAFISLEIIYADLVLYLALLFSQITESPDDPEYQAVRHIVKPIAMSIPVLIRFRQC-LTEFGRAGSTQASEGVWGGWHLLNAGKYISSIPFIIFDILRREAEDTPAGIPGEIFYLWLVSHSVNTAYSFWWDISRDWDLKLLVRGSSEGHAFGLRKDLLLFGPAGYYLAIFTDLTLRCLWMLKISPSIDRVLDKSTWVFILTFLELVRRAMWALFRMEAEWVRVQH 294          
BLAST of jgi.p|Trimin1|166695 vs. uniprot
Match: A0A6G0W6I5_9STRA (EXS domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W6I5_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.970e-16
Identity = 80/262 (30.53%), Postives = 118/262 (45.04%), Query Frame = 1
Query:  451 GRVLCPSSDVPFVEVLVADALCSLSRVFSDAGLAILVLAATWTSSAPPSQVTRV---FVTATLACLPAVLRVRQCAILHFAEPDPARRRLHALNIGKYLSTLPPVLLGALHALAPPALDGV-PLATAAAAAAAFNTAYCLAWDVRMDWGLGDLGAKA------------------------------AGLRPTLLLGAHAPYYAAIAADAALRCAWVRP----LAALGYALALTDLTLVLELVEVCRRCMWAVLRLEWEAVQ 1122
            G +  P ++ PFV+V +AD L S+S++F D  +A+L+L+ +   +     V ++         A  P ++R  QC I +        + LH LN  KY + L  +L+GAL  L  P+ D +    T     A  N+ Y L WDV MDWGLG    +                               A LR TLL      Y+AA+  D  LR  WV      +  +G      D  +V ++ EVCRRCMW + R+EW+ V+
Sbjct:  129 GGLQLPPTETPFVDVYIADGLTSMSKIFGDVAVALLMLSQSIQGTHNDMYVAKMKHHLFPYLAAASPYMIRAIQCLISYHRAVLTNDKFLHVLNTFKYGTGLCVILVGALPVLFGPSPDLLLDTDTLFLLCACCNSLYSLFWDVVMDWGLGQPPNEDQLLHEGTDEEEEDGHRNTPPLWNMKRMNSHAYLRHTLLYEPKLVYFAAMTFDGMLRILWVTSNWHWVDVIG-----ADFKMVAQVAEVCRRCMWNLFRVEWQCVK 385          
BLAST of jgi.p|Trimin1|166695 vs. uniprot
Match: W4GJU0_9STRA (EXS domain-containing protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GJU0_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 9.150e-16
Identity = 81/277 (29.24%), Postives = 117/277 (42.24%), Query Frame = 1
Query:  451 GRVLCPSSDVPFVEVLVADALCSLSRVFSDAGLAILVLAATWTSSAPPSQVTRV---FVTATLACLPAVLRVRQCAILHFAEPDPARRRLHALNIGKYLSTLPPVLLGALHALAPPALDG----VPLATAAAAAAAFNTAYCLAWDVRMDWGLGDLGAKAAG------------------------------------------LRPTLLLGAHAPYYAAIAADAALRCAWVRP----LAALGYALALTDLTLVLELVEVCRRCMWAVLRLEWEAVQ 1122
            G ++   ++ PFVEV +AD L S+S++F D  +AIL++  +          +++    +       P ++R  QC I +        + LH LN  KY + L  +L+GAL  L  P+       +   T     A  N+ Y L WDV MDWGLG     A G                                          LR TLL    A Y+AA+A DA LR  WV      +  +G      D  +V ++ EVCRRCMW   R+EW+ V+
Sbjct:  130 GGIVFAQTETPFVEVYIADGLTSMSKIFGDVAVAILMMRQSVVGVRDDMYTSKMKHHLLPYLATASPYMIRGVQCLISYHRAALVNDKFLHVLNTFKYGTGLCVILVGALPVLLSPSSMSDQRLLDTETLFLLCACCNSLYSLFWDVVMDWGLGQPPIPATGGTTDKPSAHNCDTDHDLKQSSKAATSSSPPLWNATQPNLHAYLRHTLLYQPKAVYFAALAIDALLRVLWVTSNWHWVDVVG-----ADFKMVAQVAEVCRRCMWNFFRVEWQCVK 401          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|166695 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YVP0_9STRA2.400e-272100.00EXS family-domain-containing protein n=1 Tax=Tribo... [more]
D7G030_ECTSI1.080e-5439.21EXS domain-containing protein n=2 Tax=Ectocarpus T... [more]
W7TLW9_9STRA6.970e-2335.80Protein-er retention protein n=3 Tax=Monodopsidace... [more]
A0A1V9YPV6_9STRA1.710e-2137.34Inositol monophosphatase n=1 Tax=Achlya hypogyna T... [more]
A0A7S2WQN9_9STRA2.370e-2132.13Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S0AUH6_9STRA2.820e-1832.55Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A485KLS0_9STRA7.560e-1833.46Aste57867_8887 protein n=1 Tax=Aphanomyces stellat... [more]
A0A2P5I371_9PEZI1.440e-1732.00EXS family protein n=1 Tax=Diaporthe helianthi Tax... [more]
A0A6G0W6I5_9STRA1.970e-1630.53EXS domain-containing protein n=1 Tax=Aphanomyces ... [more]
W4GJU0_9STRA9.150e-1629.24EXS domain-containing protein n=8 Tax=Aphanomyces ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_46contigContig_46:895476..896804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|166695|e_gw1.46.166.1
Descriptionphosphate ion transport
COG categoryT
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5409@1|root,KOG1162@2759|Eukaryota
Evalue1.77e-55
Seed ortholog2880.D7G030
Hectar predicted targeting categorysignal anchor
TranscriptId167017
TrackFilteredModels1
ProteinId166695
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166695gene_4691Tribonema minus UTEX_B_3156 geneContig_46 895476..896804 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4691_1exon_4691_1Tribonema minus UTEX_B_3156 exonContig_46 895476..896474 +
exon_4691_2exon_4691_2Tribonema minus UTEX_B_3156 exonContig_46 896550..896804 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4691CDS_4691Tribonema minus UTEX_B_3156 CDSContig_46 895476..896474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166695Trimin1|166695|e_gw1.46.166.1Tribonema minus UTEX_B_3156 polypeptideContig_46 895476..896804 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4691 ID=mRNA_4691|Name=jgi.p|Trimin1|166695|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1254bp|location=Sequence derived from alignment at Contig_46:895476..896804+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGAACTCTATCGGCTGTGCCTGCGGGTGCCTATAGTGCTCATCGT
TTTCGGCTGCCTATGCGGCGTAGTCATGCTGGCGCTGGACCAGCTCGGCA
TAGACTATGCCTATCACGCCAAGAAGGCATCCAAGCTCGGTGAGTGCCAC
CAAGCTGCTCTTCGTCTTCGCTGTCGGGAGACCTCGGAAACCGTATGTGT
CTTGACTGTTGCGTCGTGTGCCTCCCCCTTGCCGTTGCCTGCAGATAAGT
CACGGTCGGCGGCGCTGCAGCTGGTGCTGGGGTCTGGCTTCCTGTTGGCG
CTGCTGCTGCTGTGCCTGCGCATCGGGGAGCTGGCCCAGATCATGCCGAA
TGTGGCGGTGGGCGCATTTGCCATCATGGTGGGTCTCATGCTGCTGGTTC
CCATGCAGTCCGCCATGAGAGATGGCCTCAACTTTCTGCTCTCCACAGTG
GGCAGGGTCCTCTGCCCCTCGTCAGACGTCCCCTTCGTTGAGGTCCTCGT
CGCAGATGCCCTGTGCAGCCTGTCGCGGGTCTTCTCGGACGCGGGCCTGG
CGATACTCGTGCTGGCGGCGACTTGGACGAGCTCCGCGCCGCCATCGCAG
GTGACCCGCGTCTTCGTGACGGCGACGCTGGCGTGCCTGCCGGCGGTCCT
TCGCGTGCGCCAGTGCGCCATACTGCACTTCGCGGAGCCCGACCCGGCGC
GCCGGAGACTCCACGCCCTCAACATCGGCAAGTACCTCAGCACGCTGCCG
CCGGTGCTGCTCGGCGCGCTGCACGCGCTCGCGCCGCCGGCGCTGGACGG
CGTGCCGCTCGCGACCGCCGCCGCCGCCGCGGCCGCTTTCAACACGGCGT
ACTGCCTCGCCTGGGACGTCCGCATGGACTGGGGGCTGGGGGACCTGGGG
GCGAAGGCCGCGGGGCTGCGGCCCACGCTGCTGCTGGGCGCGCACGCGCC
GTACTACGCGGCGATCGCGGCCGACGCCGCGCTGCGCTGCGCGTGGGTCC
GGCCGCTCGCGGCGCTCGGCTACGCGCTCGCGCTCACGGACCTCACGCTC
GTCCTGGAGCTCGTGGAGGTGTGCCGGCGCTGCATGTGGGCGGTGCTGCG
CCTCGAGTGGGAGGCGGTGCAGCACGCGCCGCACTACCACCACCCTGCCG
CACACCACCACCATCATCACGCGCAGCACCACCGCCTGGGGGCAGAGGAG
GGGGGCAGCAGCGGCAGCGGCGCGGACGGCGAGAAGCTGGCGGGCGGCGT
CTGA
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protein sequence of jgi.p|Trimin1|166695

>Trimin1|166695|e_gw1.46.166.1 ID=Trimin1|166695|e_gw1.46.166.1|Name=jgi.p|Trimin1|166695|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=418bp
MEELYRLCLRVPIVLIVFGCLCGVVMLALDQLGIDYAYHAKKASKLGECH
QAALRLRCRETSETVCVLTVASCASPLPLPADKSRSAALQLVLGSGFLLA
LLLLCLRIGELAQIMPNVAVGAFAIMVGLMLLVPMQSAMRDGLNFLLSTV
GRVLCPSSDVPFVEVLVADALCSLSRVFSDAGLAILVLAATWTSSAPPSQ
VTRVFVTATLACLPAVLRVRQCAILHFAEPDPARRRLHALNIGKYLSTLP
PVLLGALHALAPPALDGVPLATAAAAAAAFNTAYCLAWDVRMDWGLGDLG
AKAAGLRPTLLLGAHAPYYAAIAADAALRCAWVRPLAALGYALALTDLTL
VLELVEVCRRCMWAVLRLEWEAVQHAPHYHHPAAHHHHHHAQHHRLGAEE
GGSSGSGADGEKLAGGV*
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mRNA from alignment at Contig_46:895476..896804+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4691 ID=mRNA_4691|Name=jgi.p|Trimin1|166695|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1329bp|location=Sequence derived from alignment at Contig_46:895476..896804+ (Tribonema minus UTEX_B_3156 )
ATGGAGGAACTCTATCGGCTGTGCCTGCGGGTGCCTATAGTGCTCATCGT TTTCGGCTGCCTATGCGGCGTAGTCATGCTGGCGCTGGACCAGCTCGGCA TAGACTATGCCTATCACGCCAAGAAGGCATCCAAGCTCGGTGAGTGCCAC CAAGCTGCTCTTCGTCTTCGCTGTCGGGAGACCTCGGAAACCGTATGTGT CTTGACTGTTGCGTCGTGTGCCTCCCCCTTGCCGTTGCCTGCAGATAAGT CACGGTCGGCGGCGCTGCAGCTGGTGCTGGGGTCTGGCTTCCTGTTGGCG CTGCTGCTGCTGTGCCTGCGCATCGGGGAGCTGGCCCAGATCATGCCGAA TGTGGCGGTGGGCGCATTTGCCATCATGGTGGGTCTCATGCTGCTGGTTC CCATGCAGTCCGCCATGAGAGATGGCCTCAACTTTCTGCTCTCCACAGTG GGCAGGGTCCTCTGCCCCTCGTCAGACGTCCCCTTCGTTGAGGTCCTCGT CGCAGATGCCCTGTGCAGCCTGTCGCGGGTCTTCTCGGACGCGGGCCTGG CGATACTCGTGCTGGCGGCGACTTGGACGAGCTCCGCGCCGCCATCGCAG GTGACCCGCGTCTTCGTGACGGCGACGCTGGCGTGCCTGCCGGCGGTCCT TCGCGTGCGCCAGTGCGCCATACTGCACTTCGCGGAGCCCGACCCGGCGC GCCGGAGACTCCACGCCCTCAACATCGGCAAGTACCTCAGCACGCTGCCG CCGGTGCTGCTCGGCGCGCTGCACGCGCTCGCGCCGCCGGCGCTGGACGG CGTGCCGCTCGCGACCGCCGCCGCCGCCGCGGCCGCTTTCAACACGGCGT ACTGCCTCGCCTGGGACGTCCGCATGGACTGGGGGCTGGGGGACCTGGGG GCGAAGGCCGCGGGGCTGCGGCCCACGCTGCTGCTGGGCGCGCACGCGCC GTACTACGCGGCGATCGCGGCCGACGCCGCGCTGCGCTGCGCGTGGGTCG TGCCGCTGCTCGAGTCGGGCACGGGCGCGATGCGCCCCGGGCACGCGACG GCGTCCGCCGTCGCCATGGCGCAGCGGCCGCTCGCGGCGCTCGGCTACGC GCTCGCGCTCACGGACCTCACGCTCGTCCTGGAGCTCGTGGAGGTGTGCC GGCGCTGCATGTGGGCGGTGCTGCGCCTCGAGTGGGAGGCGGTGCAGCAC GCGCCGCACTACCACCACCCTGCCGCACACCACCACCATCATCACGCGCA GCACCACCGCCTGGGGGCAGAGGAGGGGGGCAGCAGCGGCAGCGGCGCGG ACGGCGAGAAGCTGGCGGGCGGCGTCTGA
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Coding sequence (CDS) from alignment at Contig_46:895476..896804+

>mRNA_4691 ID=mRNA_4691|Name=jgi.p|Trimin1|166695|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1254bp|location=Sequence derived from alignment at Contig_46:895476..896804+ (Tribonema minus UTEX_B_3156 )
ATGGAGGAACTCTATCGGCTGTGCCTGCGGGTGCCTATAGTGCTCATCGT
TTTCGGCTGCCTATGCGGCGTAGTCATGCTGGCGCTGGACCAGCTCGGCA
TAGACTATGCCTATCACGCCAAGAAGGCATCCAAGCTCGGTGAGTGCCAC
CAAGCTGCTCTTCGTCTTCGCTGTCGGGAGACCTCGGAAACCGTATGTGT
CTTGACTGTTGCGTCGTGTGCCTCCCCCTTGCCGTTGCCTGCAGATAAGT
CACGGTCGGCGGCGCTGCAGCTGGTGCTGGGGTCTGGCTTCCTGTTGGCG
CTGCTGCTGCTGTGCCTGCGCATCGGGGAGCTGGCCCAGATCATGCCGAA
TGTGGCGGTGGGCGCATTTGCCATCATGGTGGGTCTCATGCTGCTGGTTC
CCATGCAGTCCGCCATGAGAGATGGCCTCAACTTTCTGCTCTCCACAGTG
GGCAGGGTCCTCTGCCCCTCGTCAGACGTCCCCTTCGTTGAGGTCCTCGT
CGCAGATGCCCTGTGCAGCCTGTCGCGGGTCTTCTCGGACGCGGGCCTGG
CGATACTCGTGCTGGCGGCGACTTGGACGAGCTCCGCGCCGCCATCGCAG
GTGACCCGCGTCTTCGTGACGGCGACGCTGGCGTGCCTGCCGGCGGTCCT
TCGCGTGCGCCAGTGCGCCATACTGCACTTCGCGGAGCCCGACCCGGCGC
GCCGGAGACTCCACGCCCTCAACATCGGCAAGTACCTCAGCACGCTGCCG
CCGGTGCTGCTCGGCGCGCTGCACGCGCTCGCGCCGCCGGCGCTGGACGG
CGTGCCGCTCGCGACCGCCGCCGCCGCCGCGGCCGCTTTCAACACGGCGT
ACTGCCTCGCCTGGGACGTCCGCATGGACTGGGGGCTGGGGGACCTGGGG
GCGAAGGCCGCGGGGCTGCGGCCCACGCTGCTGCTGGGCGCGCACGCGCC
GTACTACGCGGCGATCGCGGCCGACGCCGCGCTGCGCTGCGCGTGGGTCC
GGCCGCTCGCGGCGCTCGGCTACGCGCTCGCGCTCACGGACCTCACGCTC
GTCCTGGAGCTCGTGGAGGTGTGCCGGCGCTGCATGTGGGCGGTGCTGCG
CCTCGAGTGGGAGGCGGTGCAGCACGCGCCGCACTACCACCACCCTGCCG
CACACCACCACCATCATCACGCGCAGCACCACCGCCTGGGGGCAGAGGAG
GGGGGCAGCAGCGGCAGCGGCGCGGACGGCGAGAAGCTGGCGGGCGGCGT
CTGA
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