mRNA_4671 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|349646
Unique Name	mRNA_4671
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|349646 vs. uniprot
Match: A0A835YRZ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRZ5_9STRA)

HSP 1 Score: 792 bits (2046), Expect = 6.620e-274
Identity = 810/810 (100.00%), Postives = 810/810 (100.00%), Query Frame = 1

Query:    1 MSGGGSTLATMPLLRHAAAAVDRGRRRVLEAAGLEDMIPDLNTTITIKASPPKTAAALAARALRSGRALKRNKQLEWHGRVCMVVPHAFLYYFGEDDLAAPHGIIDLEAYTRSEVLEGNVLRVYADAADSAAAAADPXXXAEPALRPRDIYLCLASDAEARAWAAALAPDALRLRAVAAARDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDAVGGLGELVELLRGEKVALTAQVEAAAAARAEREACSAGAQAAELEAMRAELDAARQAAAAAQRQRAGMAQXXXXXXXXXXXXXXXXXXXXXXXXXXXAERRQAADAAATLAAQRRVLSREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSYPCGTPPLSPPPPLGGAVLPSXXXXXXXXXXXXXXXXXXXSXXXXXXXXXSGQAASSPHFAEARDGAPAGGNSALEDADSIMVCDLHSGTPSLLALRSTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGAALLSPEDLGEACEGARSGDGGSGSXXXXXXXGDVGSCTTAQSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGASWAHLGGAASWKQVLDRMASAVQEGAKGGEAGXXXXXXXXXAFAGRAAAAMSAGWLFRQRRSEPSGEGHEAAAAPTCGMEVGMEAGGTGLGAPVLFGQQRSAAKAALTAMTMDEVQLL 2430
            MSGGGSTLATMPLLRHAAAAVDRGRRRVLEAAGLEDMIPDLNTTITIKASPPKTAAALAARALRSGRALKRNKQLEWHGRVCMVVPHAFLYYFGEDDLAAPHGIIDLEAYTRSEVLEGNVLRVYADAADSAAAAADPXXXAEPALRPRDIYLCLASDAEARAWAAALAPDALRLRAVAAARDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDAVGGLGELVELLRGEKVALTAQVEAAAAARAEREACSAGAQAAELEAMRAELDAARQAAAAAQRQRAGMAQXXXXXXXXXXXXXXXXXXXXXXXXXXXAERRQAADAAATLAAQRRVLSREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSYPCGTPPLSPPPPLGGAVLPSXXXXXXXXXXXXXXXXXXXSXXXXXXXXXSGQAASSPHFAEARDGAPAGGNSALEDADSIMVCDLHSGTPSLLALRSTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGAALLSPEDLGEACEGARSGDGGSGSXXXXXXXGDVGSCTTAQSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGASWAHLGGAASWKQVLDRMASAVQEGAKGGEAGXXXXXXXXXAFAGRAAAAMSAGWLFRQRRSEPSGEGHEAAAAPTCGMEVGMEAGGTGLGAPVLFGQQRSAAKAALTAMTMDEVQLL
Sbjct:    1 MSGGGSTLATMPLLRHAAAAVDRGRRRVLEAAGLEDMIPDLNTTITIKASPPKTAAALAARALRSGRALKRNKQLEWHGRVCMVVPHAFLYYFGEDDLAAPHGIIDLEAYTRSEVLEGNVLRVYADAADSAAAAADPXXXAEPALRPRDIYLCLASDAEARAWAAALAPDALRLRAVAAARDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDAVGGLGELVELLRGEKVALTAQVEAAAAARAEREACSAGAQAAELEAMRAELDAARQAAAAAQRQRAGMAQXXXXXXXXXXXXXXXXXXXXXXXXXXXAERRQAADAAATLAAQRRVLSREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSYPCGTPPLSPPPPLGGAVLPSXXXXXXXXXXXXXXXXXXXSXXXXXXXXXSGQAASSPHFAEARDGAPAGGNSALEDADSIMVCDLHSGTPSLLALRSTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGAALLSPEDLGEACEGARSGDGGSGSXXXXXXXGDVGSCTTAQSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGASWAHLGGAASWKQVLDRMASAVQEGAKGGEAGXXXXXXXXXAFAGRAAAAMSAGWLFRQRRSEPSGEGHEAAAAPTCGMEVGMEAGGTGLGAPVLFGQQRSAAKAALTAMTMDEVQLL 810

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BLAST of jgi.p|Trimin1|349646 vs. uniprot
Match: D8LCD8_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCD8_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 2.220e-15
Identity = 58/149 (38.93%), Postives = 79/149 (53.02%), Query Frame = 1

Query:   64 DRGRRRVLEAAGLEDMIPDLNTTITIKASPPKTAAALAARALRSGRALKRNKQLEWHGRVCMVVPHAFLYYFGEDDLAA---PHGIIDLEAYTRSEVLEGNVLRVYADAADSAAAAADPXXXAEPALRPRDIYLCLASDAEARAWAAAL 501
            +R + +V EA GL ++  D N  +++K+SP KTAAAL+  A R G   K+N    W  R  ++VPH FLYYFGE        PHG+IDLE YT  +V++GN+L++             P     P    R  YL L    EA  WA A+
Sbjct:   16 ERLKHKVYEATGLGEVFNDSNVHLSVKSSPEKTAAALSLLAEREGLITKQNDSGSWRRRRALLVPHTFLYYFGEHTAETDLRPHGVIDLELYTDIQVVDGNLLKLA------------PGDETSPI---RTFYLRLKDGDEAEEWAQAI 149

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BLAST of jgi.p|Trimin1|349646 vs. uniprot
Match: F0YMI3_AURAN (PH domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMI3_AURAN)

HSP 1 Score: 78.6 bits (192), Expect = 2.170e-11
Identity = 53/142 (37.32%), Postives = 70/142 (49.30%), Query Frame = 1

Query:  124 NTTITIKASPPKTAAALAARALRSGRALKRNKQLEWHGRVCMVVPHAFLYYFGEDDLAAPHGIIDLEAYTRSEVLEGNVLRVYADAADSAAAAADPXXXAEPALRPRDIYLCLASDAEARAWAAALAPDALRLRAVAAARDA 549
            NTT+TIK+SPPKTAA      +R+G   KRN+Q  W  R C +VP   LYY+  +   +  GIIDLE YT  EV+  N +R+                   P +  R  +     + +  AWAAAL  +  R   VA  RDA
Sbjct:   15 NTTLTIKSSPPKTAAVATRLGVRTGVLTKRNEQQVWQRRYCALVPQTLLYYYDGEHSESARGIIDLEYYTEVEVVARNTIRL----------------STPPDIPLRSFFFKADDEDQCAAWAAALTRE--RYFVVADERDA 138

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BLAST of jgi.p|Trimin1|349646 vs. uniprot
Match: A0A7S3K628_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K628_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 4.560e-11
Identity = 52/142 (36.62%), Postives = 68/142 (47.89%), Query Frame = 1

Query:  124 NTTITIKASPPKTAAALAARALRSGRALKRNKQLEWHGRVCMVVPHAFLYYFGEDDLAAPHGIIDLEAYTRSEVLEGNVLRVYADAADSAAAAADPXXXAEPALRPRDIYLCLASDAEARAWAAALAPDALRLRAVAAARDA 549
            NT +TIK+SPPKTAA      +R G   KRN+  +W  R C +VP   LYYF  +      GIIDLE YT  E++  N +R+                   P +  R  +    +D +  AWAAAL  +  R   VA  RDA
Sbjct:   19 NTALTIKSSPPKTAAVARRLGVRVGTLTKRNESNQWQRRYCALVPQTLLYYFDSESSEFARGIIDLEYYTDVEIVAKNTIRL----------------STPPDIPLRSFFFRADNDEQCAAWAAALTRE--RYFVVAEERDA 142

[Close]

BLAST of jgi.p|Trimin1|349646 vs. uniprot
Match: D8LCP7_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCP7_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 1.430e-10
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = 1

Query:  130 TITIKASPPKTAAALAARALRSGRALKRNKQLEWHGRVCMVVPHAFLYYFGEDDLAAPHGIIDLEAYT 333
            TIT+K+SPP+TAA +   ++R G   K+NKQ  W  R C +VPH FLYYF   D   P G+IDL+ YT
Sbjct:   86 TITVKSSPPRTAAEMTKLSVRRGWMFKKNKQGAWQRRYCCLVPHTFLYYFESKDAEVPRGVIDLDPYT 153

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BLAST of jgi.p|Trimin1|349646 vs. uniprot
Match: A0A6H5JHM0_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHM0_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.650e-10
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = 1

Query:  130 TITIKASPPKTAAALAARALRSGRALKRNKQLEWHGRVCMVVPHAFLYYFGEDDLAAPHGIIDLEAYT 333
            TIT+K+SPP+TAA +   ++R G   K+NKQ  W  R C +VPH FLYYF   D   P G+IDL+ YT
Sbjct:   91 TITVKSSPPRTAAEMTKLSVRRGWMFKKNKQGAWQRRYCCLVPHTFLYYFESKDAEVPRGVIDLDPYT 158

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|349646 vs. uniprot

BLAST of jgi.p|Trimin1|349646 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6


Match Name	E-value	Identity	Description
A0A835YRZ5_9STRA	6.620e-274	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
D8LCD8_ECTSI	2.220e-15	38.93	N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI...	[more]
F0YMI3_AURAN	2.170e-11	37.32	PH domain-containing protein n=1 Tax=Aureococcus a...	[more]
A0A7S3K628_9STRA	4.560e-11	36.62	Hypothetical protein n=1 Tax=Aureoumbra lagunensis...	[more]
D8LCP7_ECTSI	1.430e-10	51.47	PH domain-containing protein n=1 Tax=Ectocarpus si...	[more]
A0A6H5JHM0_9PHAE	1.650e-10	51.47	PH domain-containing protein n=1 Tax=Ectocarpus sp...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_46	contig	Contig_46:726595..733552 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|349646\|estExt_Genemark1.C_Ctg_460114
Description	Pleckstrin homology domain.
COG category	S
Max annot lvl	2759\|Eukaryota
EggNOG OGs	2E9MN@1\|root,2SFYW@2759\|Eukaryota
Evalue	2.74e-12
Seed ortholog	44056.XP_009041617.1
Hectar predicted targeting category	other localisation
TranscriptId	349968
Track	FilteredModels1
ProteinId	349646

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349646	gene_4671	Tribonema minus UTEX_B_3156	gene	Contig_46 726595..733552 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349646	Trimin1\|349646\|estExt_Genemark1.C_Ctg_460114	Tribonema minus UTEX_B_3156	polypeptide	Contig_46 726595..733076 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_4671_1	exon_4671_1	Tribonema minus UTEX_B_3156	exon	Contig_46 726595..726674 +
exon_4671_2	exon_4671_2	Tribonema minus UTEX_B_3156	exon	Contig_46 727499..727770 +
exon_4671_3	exon_4671_3	Tribonema minus UTEX_B_3156	exon	Contig_46 728555..728910 +
exon_4671_4	exon_4671_4	Tribonema minus UTEX_B_3156	exon	Contig_46 728988..729113 +
exon_4671_5	exon_4671_5	Tribonema minus UTEX_B_3156	exon	Contig_46 729663..729702 +
exon_4671_6	exon_4671_6	Tribonema minus UTEX_B_3156	exon	Contig_46 730829..730887 +
exon_4671_7	exon_4671_7	Tribonema minus UTEX_B_3156	exon	Contig_46 731388..732743 +
exon_4671_8	exon_4671_8	Tribonema minus UTEX_B_3156	exon	Contig_46 732874..732937 +
exon_4671_9	exon_4671_9	Tribonema minus UTEX_B_3156	exon	Contig_46 732997..733552 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_4671	CDS_4671	Tribonema minus UTEX_B_3156	CDS	Contig_46 726595..726674 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_4671	UTR3_4671	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_46 733077..733552 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_46:726595..733552+
coding sequence from alignment at Contig_46:726595..733552+

spliced messenger RNA

>mRNA_4671 ID=mRNA_4671|Name=jgi.p|Trimin1|349646|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2909bp|location=Sequence derived from alignment at Contig_46:726595..733552+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGGAGGCGGCAGCACGCTGGCCACGATGCCTTTGCTGCGGCACGC
GGCAGCTGCCGTGGACAGGGGTCGACGCAGGGTGCTCGAGGCGGCGGGCC
TGGAGGACATGATCCCCGACCTCAACACGACCATCACCATCAAGGCCTCG
CCGCCGAAGACGGCGGCGGCGCTGGCCGCGCGCGCGCTGCGCAGCGGGCG
CGCCCTCAAGCGCAACAAGCAGCTCGAGTGGCACGGCCGCGTGTGCATGG
TCGTGCCGCACGCGTTCCTGTACTACTTTGGCGAGGACGACCTCGCCGCT
CCGCACGGCATCATAGACCTCGAGGCGTACACGCGCTCCGAGGTGCTGGA
AGGCAACGTGCTGCGCGTCTACGCCGACGCTGCCGACAGCGCCGCCGCCG
CCGCCGACCCTGCTGCTGCCGCGGAGCCCGCGCTGCGCCCGCGCGACATC
TACCTGTGCCTCGCCAGCGACGCCGAGGCGCGGGCATGGGCAGCAGCGCT
GGCGCCGGACGCGCTGCGGCTGCGCGCCGTCGCCGCCGCGCGCGATGCCG
CCGCGGCGCGCTGCGCCGGCGCGCAGGCCGCAGCGGCGGCGGCGGCCGAG
GCGGCGCTGCGCGAGGTGCGCGGCGCGCGCGCGCAGCGCGACGCGGCGGC
GGCAGAGGCGGCGGCGCGCGCGGCGGCGGCGGCGCGCGCAGCGGCACATG
CGCGCGGGGATGCGGTGGGGGGCCTGGGAGAACTGGTGGAGCTGCTGCGG
GGGGAGAAGGTGGCGCTGACAGCGCAGGTGGAGGCGGCGGCGGCGGCGCG
CGCGGAGCGCGAGGCGTGCAGCGCTGGCGCTCAGGCTGCGGAGCTGGAGG
CGATGCGAGCTGAGCTGGACGCAGCGCGACAGGCCGCCGCGGCGGCGCAG
CGGCAGCGCGCGGGCATGGCGCAGGAGTTGCAGGCCCTGCGCGCGGCGCT
CGACGACGCGTGCGCCGACGCCGCCGAGGCACGCGCCAACATGGCGGCGG
TCGCGGCGGAGCGGCGCCAGGCGGCGGACGCCGCAGCAACGCTCGCGGCG
CAGCGCCGCGTGCTGTCGCGCGAGCTGCGCGCCGCACGCGTGGACGCCGC
CGCCGCCGCCGCGTCGCACGCGCGCCTGGCGGAGGCGTACAGCGCGCTGG
AGGCGAGGGCGGCCGCGGCGGCGGCGGCGCACGGGTCTTACCCTTGCGGC
ACGCCGCCGCTGTCGCCGCCGCCGCCGCTGGGCGGTGCTGTACTGCCGTC
GCCGCAGGGCGCTGCATCGCCGCCGCCGCCGCTGCTGACAGCGTCGCCGC
TGCTGCGCAGTACCAGCCAGTCGCCGCTGCCACGCAGCAGCGGCCAGGCG
GCATCCTCGCCTCACTTTGCGGAGGCGCGTGACGGCGCACCGGCAGGTGG
CAACAGCGCTCTGGAGGACGCCGACAGCATCATGGTTTGCGACCTCCACT
CAGGCACGCCATCGCTGCTAGCGCTGCGGTCCACAGCCGCGGCCAGCGCA
CCGCCGTCGCCGGCGCTGTCCGCAGGCTCGGCTGCGGCGCTTAGTGATGA
TACTGCTGCCGCCACTGCCGCCGCGCCGCTGCAGCAGTGGCTGGCGGCGC
GGCAGCGGCAGGCCGCGCTGCCGCCGTCGTGGGGGCCGGACTCGGATGAC
GAGAATGGCATTGTGACGGCAACAGAGGTCCTGGCAGCGCTGCGCGAGAC
ATTGGAGAGCGCTGCTGCAGCAGCGACGGCGGCTGTCGAGGCGTCGTCGT
CCCGCGGCGCAGCGTTGCTGTCGCCTGAAGACCTTGGAGAGGCGTGTGAG
GGGGCTCGCAGCGGCGACGGCGGCAGCGGCAGCGGCAGCACAGGCAGCAG
AAGTGGCGACGTTGGCAGTTGCACAACTGCGCAAAGCTCAAGTGCACTGG
CAAGCGCTGCAGCGGCAGAGCGCACTCCCCGCAGCACCGCCGCCGAGGGC
GCCGCGGCGCCGCCGCCGCCGCCGGGCACCTCTGCGCGCGACGCCGCGGC
CGGCAGCGACAGCAGCAGCAGCGCTCAACAGGCGCCGCCTCCTCTGCCGG
AGCCGCCGCAGCAGCAGGCCGGCGCCTCCTGGGCCCATCTCGGCGGCGCT
GCGAGCTGGAAGCAAGTTCTAGACCGCATGGCCAGTGCGGTGCAGGAGGG
GGCCAAGGGGGGGGAGGCGGGGGGGGCGGCGGCGGCGGCGGGGGGGAGCG
CGTTCGCAGGGCGCGCTGCTGCCGCGATGAGCGCCGGCTGGCTGTTCCGG
CAGCGGCGCTCAGAGCCCAGCGGCGAGGGCCATGAAGCGGCAGCAGCGCC
GACATGCGGCATGGAGGTGGGGATGGAAGCTGGGGGCACGGGGCTGGGCG
CACCCGTGCTGTTCGGGCAGCAGCGCTCTGCAGCGAAGGCCGCCTTGACA
GCCATGACCATGGACGAAGTCCAGCTGCTGTAGAAATCAAGGCCTCACGC
ACAGCCGTGCTCACTTAAAGCGATCACAAGCACACACTGGCATCCGGGGC
AGCAGCGCTCAGCATCAGGTGACGGCGCTGCTGCAGCGGCACAAAGCGCT
GAGCGCAGGCGCTGCGCGCGGGTGGTCGGTCACCGCGTTCGCGGCAGCGT
CTTGTTGCAAAGGATGAAGCACCGCAGTTGCACTGCAATCGAAAGAGTGG
GTAGCCTGCGAGACGCGCACCGGCCGTTTGCGTTCTGTCGAGCTGACACC
TGCAGGGGGGCATTGCCTTGACACAAGCGCGACACTGCATACTTCAACCG
CTTGAAGTATGTGATGGCATGATCGCTGATGATTTTAAATAATGTTGCTG
TGGTGTCGTCGGAAGCTGAGGATGCGCGCATCATCATGGCATGTACATAG
TTCTGTTGATGCTGATGTGAATTACAAGTGCAAGTTGAATGGCATGACGG
CAAATTCAA

protein sequence of jgi.p|Trimin1|349646

>Trimin1|349646|estExt_Genemark1.C_Ctg_460114 ID=Trimin1|349646|estExt_Genemark1.C_Ctg_460114|Name=jgi.p|Trimin1|349646|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=811bp
MSGGGSTLATMPLLRHAAAAVDRGRRRVLEAAGLEDMIPDLNTTITIKAS
PPKTAAALAARALRSGRALKRNKQLEWHGRVCMVVPHAFLYYFGEDDLAA
PHGIIDLEAYTRSEVLEGNVLRVYADAADSAAAAADPAAAAEPALRPRDI
YLCLASDAEARAWAAALAPDALRLRAVAAARDAAAARCAGAQAAAAAAAE
AALREVRGARAQRDAAAAEAAARAAAAARAAAHARGDAVGGLGELVELLR
GEKVALTAQVEAAAAARAEREACSAGAQAAELEAMRAELDAARQAAAAAQ
RQRAGMAQELQALRAALDDACADAAEARANMAAVAAERRQAADAAATLAA
QRRVLSRELRAARVDAAAAAASHARLAEAYSALEARAAAAAAAHGSYPCG
TPPLSPPPPLGGAVLPSPQGAASPPPPLLTASPLLRSTSQSPLPRSSGQA
ASSPHFAEARDGAPAGGNSALEDADSIMVCDLHSGTPSLLALRSTAAASA
PPSPALSAGSAAALSDDTAAATAAAPLQQWLAARQRQAALPPSWGPDSDD
ENGIVTATEVLAALRETLESAAAAATAAVEASSSRGAALLSPEDLGEACE
GARSGDGGSGSGSTGSRSGDVGSCTTAQSSSALASAAAAERTPRSTAAEG
AAAPPPPPGTSARDAAAGSDSSSSAQQAPPPLPEPPQQQAGASWAHLGGA
ASWKQVLDRMASAVQEGAKGGEAGGAAAAAGGSAFAGRAAAAMSAGWLFR
QRRSEPSGEGHEAAAAPTCGMEVGMEAGGTGLGAPVLFGQQRSAAKAALT
AMTMDEVQLL*

mRNA from alignment at Contig_46:726595..733552+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4671 ID=mRNA_4671|Name=jgi.p|Trimin1|349646|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6958bp|location=Sequence derived from alignment at Contig_46:726595..733552+ (Tribonema minus UTEX_B_3156 )
ATGTCAGGAGGCGGCAGCACGCTGGCCACGATGCCTTTGCTGCGGCACGC
GGCAGCTGCCGTGGACAGGGGTCGACGCAGGTGAGGCACTCATCAGCGTG
TTCGCAGATGCCGCGGGGATGCACCAAGAACAGACCTCGGCTAATCTCCA
CTGTCTGCACGCGCCCTTCAAGGAGGCTACATAGCACTTATAATATACGG
CTGCGATCTGCGCTCAGGCTGACGCATGCTGAAGCACGAAGTACTCTCCA
GAAAAACTTGGTCGGTCGTAATGCACTATTCAAACCCGTCGCGCACCTGA
ATCTGCCCTAGTTACTGGGCCTCATAGCTCTTGTACTGGTTACGAGTTCT
ATTGGAATGCGGTTCGACGTGCATGTTCGTGGGACATTCCCACAACTTGA
GCTCTCACTCAGTTCCCAGTACCAGTCTCAGATGCGCAACCGCACCAGCA
CAGCAGTGAAGCAGTGAAACCTCGCTATGAAGTAAGCCTGCGCAGCGCAG
CAATCTTGAAGAGGTTTCACAGCGCTCATCTCAGCTTATGTTGATGTATG
CACTGCTGCTTGAGGTTTCAACAGCTTCAACACTCGCTCCCAGAGCCCCC
ATGTGTTGCGCCTCTGAGAGGGCCTGTGGTGAGCACTGCTGCAATTTGAG
GCCTCATACAGCTCCAACTGGCAACATCACATTTCCTCTGTAGGGCGCGC
GCACGGTGCTGGAAACGACGGGCCTGGAGGGGACATGATTCCCGACCCAA
TACGACCATCACCATCAAGGCACCGCTGTCAAACGCTGCTGCTGACAGAC
AGCAACCCCTCACGCACTGTTTCCCGCTCCCCACGCCCGCCGTGTGCGCT
CATCCGCGCCGCCGCCGCCGCAACACCGCGCGCCGCCGCCGCCGCCGCGC
GCAGGGTGCTCGAGGCGGCGGGCCTGGAGGACATGATCCCCGACCTCAAC
ACGACCATCACCATCAAGGCCTCGCCGCCGAAGACGGCGGCGGCGCTGGC
CGCGCGCGCGCTGCGCAGCGGGCGCGCCCTCAAGCGCAACAAGCAGCTCG
AGTGGCACGGCCGCGTGTGCATGGTCGTGCCGCACGCGTTCCTGTACTAC
TTTGGCGAGGACGACCTCGCCGCTCCGCACGGCATCATAGACCTCGAGGC
GTACACGCGCTCCGAGGTGCTGGAAGGTGAGCAGTTAAAGTTTTATACTT
CTCGTGCATCTGCTGTTGGAGTACTGCCGCACCTGTATACTTCAAGTATA
TGTAGTTGCTGTTCAAGTACCGCCGTGCCGCACGGCATTATAGACCTCGA
GGCGTACACGCGGTCGGAGGTGCTGGAAGTGTGCGCAGTTGAAGTTTTGA
AGTGTAGTTGCTGTTGAAGTGTTGCAGCGCTGCACAGCATCATCGCACTC
GAGGCGTACACGCGCTACAAAGCGCTCGAGGGTGGGCAGTTGAAGTTGCC
ATTGAAGTAATGCTGTGCTGCATGGACATAGACCTCGAGGCGTGCACACG
GTCCAAGGTGCTCGAAGGTGGGCAGCTGAAGCTTTGAGGTGTAGGTTGCT
GTGTAGTTGCTGTTGAAGTGTTGAAGTGTAGTTGCTGTTGAAGTACTGCC
GCGCCGCACGGCATCATGGACCTCAAGGCGTACACGCACTCCAAGGTGCT
CGAAGGTGGGCTGTTGGCAGTGTTTGTAATGCCTTCGATAATGTTGAAGT
ATCGCCGCGCTGCATGGCATCATCAAGCAATGGCGCGTACATGCGGTCAA
AGGTGCTTAAAAGTGGGTAGGCGGTGCCGTGCACAGTCAAGAAATGCGGC
GCACACCAGTTAGTTGAAAGCAGTGCAGCACAAGCCAAATGTGGAGCAAT
GCTGCCGCGCACGCCTTTGCCAGCGTGCGCAGGCGCGTATGCCGCCAGAA
AACACCATCAATCACCACGCCCCCCCCTCCGCTCCACCCCCGTGCTGAGC
ACTGCTGCAGGCAACGTGCTGCGCGTCTACGCCGACGCTGCCGACAGCGC
CGCCGCCGCCGCCGACCCTGCTGCTGCCGCGGAGCCCGCGCTGCGCCCGC
GCGACATCTACCTGTGCCTCGCCAGCGACGCCGAGGCGCGGGCATGGGCA
GCAGCGCTGGCGCCGGACGCGCTGCGGCTGCGCGCCGTCGCCGCCGCGCG
CGATGCCGCCGCGGCGCGCTGCGCCGGCGCGCAGGCCGCAGCGGCGGCGG
CGGCCGAGGCGGCGCTGCGCGAGGTGCGCGGCGCGCGCGCGCAGCGCGAC
GCGGCGGCGGCAGAGGCGGCGGCGCGCGCGGCGGCGGCGGCGCGCGCAGC
GGCACATGCGCGCGGGGTGCTCGGGATGGGGTTGGGTTTAGGCGGAGGCG
ACGGTCGGGTGGTGGTGGGGGGGATGAGATTGGGGCTGTGGAGGATGCGG
TGGGGGGCCTGGGAGAACTGGTGGAGCTGCTGCGGGGGGAGAAGGTGGCG
CTGACAGCGCAGGTGGAGGCGGCGGCGGCGGCGCGCGCGGAGCGCGAGGC
GTGCAGCGCTGGCGCTCAGGTGAACTGCAGCGATGTAGTGTTCTGTGGCA
ATGTACTTCGAAGTATAGGGAGTATGGTATGGAGATATTTTTAAGTGGTG
CGCGATCGTGCCTGCTGCGGCGCAGCGCACTGCAGTGAGCAGCAGCAGTG
CATCAGTGAGCTGCAGCAGTGCATGCTGTGTTGCGCATCATCTCTTTCGC
ACTTGTGCTTTCGCGACTGTGCCTGTGGCGGCAGCAACGGCGAACGTTCT
CGAATTCCTTGCACCTTGTACCATCATCATAGTTTGTCACTGCGCCGATA
TCGCGATTAATTGTCCGGTGTTTTCATCAGCACAGCGATTCATCTCCGCA
ATCCGCATCAACTCTGCTCACGTATTAAGCTGCTCCCTTCCGTACCCCTG
AATCGTGCAGTATCACGCACAGTATACATGCTTCAATGCGATGAGCACAA
GGATTTGCGGGTAGCACATTGCTCGTAGCTTTGACATCCGTGTTGAGCTT
TGTTCCCCCACATGTCATGGATCGCTGCTCTGACACTCTGTTGGTGCATC
TGACGCGTGGCTGATCAGGCTGCGGAGCTGGAGGCGATGCGAGCTGAGCT
GGACGCAGGTCAGTAGCATCGCTCAACCCCTGCCCCATACAAAATACACA
GTGATGTCATGTTAGGGTTTGAAGTCCAACCAACTGCAAGTCGACGTTCG
TGTGTTTTGTGATCAGAATAACTAGGTTTAGGCCCACAGCTGCGCACAGT
CAGGGTCACTCAGCATTAGAGCATGCCTCATTGATCGGGGTGCCCCATGC
GCGACAGAACCACGCAGCGCACGCATTGCGCAGTGTTGTGCTTTGCAGGT
GTGAGCCTGAATGTGCATGGGATGTGGTAGGGTTACAATTAGACCTAGAG
CTGCTGTTGGCCTAGCCCTAAGCACCGGCGCAGCGTACACGTTCACGCAT
CTGCTGCGCAGGGTGGCGGCGAAGTCTACCCCAATGTGTCCTGCAGATGT
TGCGCCATGATGCTTTCACCACCCCACGCCTCAAGTCATATGTTTAGGAA
CGGCTAAACTGGCGCCAGGGCATTTGCCTCCCCCCCCCCCCACCTCCCCC
CACATACTTCGAAGTCAATTAAACAAGCGTATCCCTCATCCGCAGTGCCA
ACCATCAACGCCGCGTGCGCAGTCAGAGTACTCGTGACCCTTGTGCACAA
GCAGTCGTTTTTTGCCGTTGGTGCTGAGAAGTGACACCGCCCCTGCCTGT
CGCCCCCACGCAGCGCGAGAGGCCACCGCGGCGGCGCAGCGGCATACCTA
CCCACCCCTCATTCCAGCAGAGCGGCAAAGGTGTACTTTATTATATTCCA
CTTGTGGCTGTGGAAATGCCATGTTGTAGGTGTGTCGCCTTGTTCTCACT
CTTGGATGTAGCATGCAAAGCTTGCACGCCACACCCCGCCCCCCACATCA
CCCCCAACAAAGCACCCGCAAGCGACTGTCCCCCACATACTAGCAGGGAT
ACCAAACAAAGCTACAAGACTCTCCCCCCACAGACAGACCCACCCAGCTC
CACGCAGACTCCATCTCAAATTTTTCATGCAGGCCAAGGTCACCATAATC
GGCCCTGAACTGGTGTACATCAGCAGCGCCGTGTGCGCAGTCAGAGCTCA
ACCCCCCCCCCGTGCACAAGCCATCTCTGTTTTGTGGTATGTGCTGAGAC
GTGATGCCAACTGGTGCCTGTCTCCCCCGCGCAGCGCGACAGGCCGCCGC
GGCGGCGCAGCGGCAGCGCGCGGGCATGGCGCAGGAGTTGCAGGTGCGCG
CGATGGCCCTGTGGACGCGCAGCACATGCGCTGAGCACTGATTTACTGAG
CACTGATTTGCTGAGTGCTGATTTGCTGAGCGGTGATGACCACACGGGGG
CTGCAGCAGCGGCAAACATTGTCTGACTGCAGGCACTGCCTATCTCACAC
ACGCTCAAGCAGGGTCAGAAATAGGGTTAAGGTTTACAGACACACACACA
CACACACACACACCAGGCTCCAGCGAGCGCCCTGGCATCAGCACTATCAA
AAAATGGTGCGCTACCGTCAGTGCGGCCACAAGTCCCGCGAACACCGTTG
CAGCCGGCGCACACACGCTGCCGTGCTGGTGCTGCTGCGGCGCTGGCCGC
CGCCGCCGCTGCGGCGCCAGCGCAGCTGCCCTCATTGCGCTGGGAAGGCT
CACCGGCGCCTCAGCGAAATCTGCAGCCAGCAACACACGCCCGTCGCACG
CGCTGACGGCGCTGCGCCGCTGCCGCCGCTGCTGCCGCCGCAGGCCCTGC
GCGCGGCGCTCGACGACGCGTGCGCCGACGCCGCCGAGGCACGCGCCAAC
ATGGCGGCGGTCGCGGCGGAGCGGCGCCAGGCGGCGGACGCCGCAGCAAC
GCTCGCGGCGCAGCGCCGCGTGCTGTCGCGCGAGCTGCGCGCCGCACGCG
TGGACGCCGCCGCCGCCGCCGCGTCGCACGCGCGCCTGGCGGAGGCGTAC
AGCGCGCTGGAGGCGAGGGCGGCCGCGGCGGCGGCGGCGCACGGGTCTTA
CCCTTGCGGCACGCCGCCGCTGTCGCCGCCGCCGCCGCTGGGCGGTGCTG
TACTGCCGTCGCCGCAGGGCGCTGCATCGCCGCCGCCGCCGCTGCTGACA
GCGTCGCCGCTGCTGCGCAGTACCAGCCAGTCGCCGCTGCCACGCAGCAG
CGGCCAGGCGGCATCCTCGCCTCACTTTGCGGAGGCGCGTGACGGCGCAC
CGGCAGGTGGCAACAGCGCTCTGGAGGACGCCGACAGCATCATGGTTTGC
GACCTCCACTCAGGCACGCCATCGCTGCTAGCGCTGCGGTCCACAGCCGC
GGCCAGCGCACCGCCGTCGCCGGCGCTGTCCGCAGGCTCGGCTGCGGCGC
TTAGTGATGATACTGCTGCCGCCACTGCCGCCGCGCCGCTGCAGCAGTGG
CTGGCGGCGCGGCAGCGGCAGGCCGCGCTGCCGCCGTCGTGGGGGCCGGA
CTCGGATGACGAGAATGGCATTGTGACGGCAACAGAGGTCCTGGCAGCGC
TGCGCGAGACATTGGAGAGCGCTGCTGCAGCAGCGACGGCGGCTGTCGAG
GCGTCGTCGTCCCGCGGCGCAGCGTTGCTGTCGCCTGAAGACCTTGGAGA
GGCGTGTGAGGGGGCTCGCAGCGGCGACGGCGGCAGCGGCAGCGGCAGCA
CAGGCAGCAGAAGTGGCGACGTTGGCAGTTGCACAACTGCGCAAAGCTCA
AGTGCACTGGCAAGCGCTGCAGCGGCAGAGCGCACTCCCCGCAGCACCGC
CGCCGAGGGCGCCGCGGCGCCGCCGCCGCCGCCGGGCACCTCTGCGCGCG
ACGCCGCGGCCGGCAGCGACAGCAGCAGCAGCGCTCAACAGGCGCCGCCT
CCTCTGCCGGAGCCGCCGCAGCAGCAGGCCGGCGCCTCCTGGGCCCATCT
CGGCGGCGCTGCGAGCTGGAAGCAAGTTCTAGACCGCATGGCCAGTGCGG
TGCAGGAGGGGGCCAAGGGGGGGGAGGCGGGGGGGGCGGCGGCGGCGGCG
GGGGGGAGCGCGTTCGCAGGGCGCGCTGCTGCCGCGATGAGCGCCGGCTG
GCTGTTCCGGCAGCGGCGCTCAGAGCCCAGCGGCGAGGGCCATGAAGCGG
TTGACCGTCAGGGATAGCGGCCGCGTCGCAGCTGCTGAGCGTTGAGAGTG
TTTTCCTGCTGAGAGAGGCTCCTTGTGAACGGGGTGCTCGCAAGGGAGGC
GCATCGATGCGCGGTTGCTGGCCGTGCAGGCAGCAGCGCCGACATGCGGC
ATGGAGGTGGGGATGGAAGCTGGGGGCACGGGGCTGGGCGCACGTGCTTG
TTGTAGGCGTCACTGCTGAGGGTTCGGGTAGACGACGGCGTGGTCCTGCG
AGCCGTGCTGTTCGGGCAGCAGCGCTCTGCAGCGAAGGCCGCCTTGACAG
CCATGACCATGGACGAAGTCCAGCTGCTGTAGAAATCAAGGCCTCACGCA
CAGCCGTGCTCACTTAAAGCGATCACAAGCACACACTGGCATCCGGGGCA
GCAGCGCTCAGCATCAGGTGACGGCGCTGCTGCAGCGGCACAAAGCGCTG
AGCGCAGGCGCTGCGCGCGGGTGGTCGGTCACCGCGTTCGCGGCAGCGTC
TTGTTGCAAAGGATGAAGCACCGCAGTTGCACTGCAATCGAAAGAGTGGG
TAGCCTGCGAGACGCGCACCGGCCGTTTGCGTTCTGTCGAGCTGACACCT
GCAGGGGGGCATTGCCTTGACACAAGCGCGACACTGCATACTTCAACCGC
TTGAAGTATGTGATGGCATGATCGCTGATGATTTTAAATAATGTTGCTGT
GGTGTCGTCGGAAGCTGAGGATGCGCGCATCATCATGGCATGTACATAGT
TCTGTTGATGCTGATGTGAATTACAAGTGCAAGTTGAATGGCATGACGGC
AAATTCAA

Coding sequence (CDS) from alignment at Contig_46:726595..733552+

>mRNA_4671 ID=mRNA_4671|Name=jgi.p|Trimin1|349646|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2433bp|location=Sequence derived from alignment at Contig_46:726595..733552+ (Tribonema minus UTEX_B_3156 )
ATGTCAGGAGGCGGCAGCACGCTGGCCACGATGCCTTTGCTGCGGCACGC
GGCAGCTGCCGTGGACAGGGGTCGACGCAGGGTGCTCGAGGCGGCGGGCC
TGGAGGACATGATCCCCGACCTCAACACGACCATCACCATCAAGGCCTCG
CCGCCGAAGACGGCGGCGGCGCTGGCCGCGCGCGCGCTGCGCAGCGGGCG
CGCCCTCAAGCGCAACAAGCAGCTCGAGTGGCACGGCCGCGTGTGCATGG
TCGTGCCGCACGCGTTCCTGTACTACTTTGGCGAGGACGACCTCGCCGCT
CCGCACGGCATCATAGACCTCGAGGCGTACACGCGCTCCGAGGTGCTGGA
AGGCAACGTGCTGCGCGTCTACGCCGACGCTGCCGACAGCGCCGCCGCCG
CCGCCGACCCTGCTGCTGCCGCGGAGCCCGCGCTGCGCCCGCGCGACATC
TACCTGTGCCTCGCCAGCGACGCCGAGGCGCGGGCATGGGCAGCAGCGCT
GGCGCCGGACGCGCTGCGGCTGCGCGCCGTCGCCGCCGCGCGCGATGCCG
CCGCGGCGCGCTGCGCCGGCGCGCAGGCCGCAGCGGCGGCGGCGGCCGAG
GCGGCGCTGCGCGAGGTGCGCGGCGCGCGCGCGCAGCGCGACGCGGCGGC
GGCAGAGGCGGCGGCGCGCGCGGCGGCGGCGGCGCGCGCAGCGGCACATG
CGCGCGGGGATGCGGTGGGGGGCCTGGGAGAACTGGTGGAGCTGCTGCGG
GGGGAGAAGGTGGCGCTGACAGCGCAGGTGGAGGCGGCGGCGGCGGCGCG
CGCGGAGCGCGAGGCGTGCAGCGCTGGCGCTCAGGCTGCGGAGCTGGAGG
CGATGCGAGCTGAGCTGGACGCAGCGCGACAGGCCGCCGCGGCGGCGCAG
CGGCAGCGCGCGGGCATGGCGCAGGAGTTGCAGGCCCTGCGCGCGGCGCT
CGACGACGCGTGCGCCGACGCCGCCGAGGCACGCGCCAACATGGCGGCGG
TCGCGGCGGAGCGGCGCCAGGCGGCGGACGCCGCAGCAACGCTCGCGGCG
CAGCGCCGCGTGCTGTCGCGCGAGCTGCGCGCCGCACGCGTGGACGCCGC
CGCCGCCGCCGCGTCGCACGCGCGCCTGGCGGAGGCGTACAGCGCGCTGG
AGGCGAGGGCGGCCGCGGCGGCGGCGGCGCACGGGTCTTACCCTTGCGGC
ACGCCGCCGCTGTCGCCGCCGCCGCCGCTGGGCGGTGCTGTACTGCCGTC
GCCGCAGGGCGCTGCATCGCCGCCGCCGCCGCTGCTGACAGCGTCGCCGC
TGCTGCGCAGTACCAGCCAGTCGCCGCTGCCACGCAGCAGCGGCCAGGCG
GCATCCTCGCCTCACTTTGCGGAGGCGCGTGACGGCGCACCGGCAGGTGG
CAACAGCGCTCTGGAGGACGCCGACAGCATCATGGTTTGCGACCTCCACT
CAGGCACGCCATCGCTGCTAGCGCTGCGGTCCACAGCCGCGGCCAGCGCA
CCGCCGTCGCCGGCGCTGTCCGCAGGCTCGGCTGCGGCGCTTAGTGATGA
TACTGCTGCCGCCACTGCCGCCGCGCCGCTGCAGCAGTGGCTGGCGGCGC
GGCAGCGGCAGGCCGCGCTGCCGCCGTCGTGGGGGCCGGACTCGGATGAC
GAGAATGGCATTGTGACGGCAACAGAGGTCCTGGCAGCGCTGCGCGAGAC
ATTGGAGAGCGCTGCTGCAGCAGCGACGGCGGCTGTCGAGGCGTCGTCGT
CCCGCGGCGCAGCGTTGCTGTCGCCTGAAGACCTTGGAGAGGCGTGTGAG
GGGGCTCGCAGCGGCGACGGCGGCAGCGGCAGCGGCAGCACAGGCAGCAG
AAGTGGCGACGTTGGCAGTTGCACAACTGCGCAAAGCTCAAGTGCACTGG
CAAGCGCTGCAGCGGCAGAGCGCACTCCCCGCAGCACCGCCGCCGAGGGC
GCCGCGGCGCCGCCGCCGCCGCCGGGCACCTCTGCGCGCGACGCCGCGGC
CGGCAGCGACAGCAGCAGCAGCGCTCAACAGGCGCCGCCTCCTCTGCCGG
AGCCGCCGCAGCAGCAGGCCGGCGCCTCCTGGGCCCATCTCGGCGGCGCT
GCGAGCTGGAAGCAAGTTCTAGACCGCATGGCCAGTGCGGTGCAGGAGGG
GGCCAAGGGGGGGGAGGCGGGGGGGGCGGCGGCGGCGGCGGGGGGGAGCG
CGTTCGCAGGGCGCGCTGCTGCCGCGATGAGCGCCGGCTGGCTGTTCCGG
CAGCGGCGCTCAGAGCCCAGCGGCGAGGGCCATGAAGCGGCAGCAGCGCC
GACATGCGGCATGGAGGTGGGGATGGAAGCTGGGGGCACGGGGCTGGGCG
CACCCGTGCTGTTCGGGCAGCAGCGCTCTGCAGCGAAGGCCGCCTTGACA
GCCATGACCATGGACGAAGTCCAGCTGCTGTAG