mRNA_4621 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|146163
Unique NamemRNA_4621
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|146163 vs. uniprot
Match: A0A836CDT1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDT1_9STRA)

HSP 1 Score: 269 bits (687), Expect = 5.280e-91
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 
Query:    1 FNPSIMTAAAQGGNVPAMQWIKDHCPPLAASSIWEFKAAVRAXXXXXXXXXXXLMEQEYFRPCPNRRRAYGIVLCAAARTGQAAVFVWVRDESSPWRGDDHPMGLAAAGGHLSTVLVLMELGCEATSNSVLNAIRGGHILVL 426
            FNPSIMTAAAQGGNVPAMQWIKDHCPPLAASSIWEFKAAVRAXXXXXXXXXXXLMEQEYFRPCPNRRRAYGIVLCAAARTGQAAVFVWVRDESSPWRGDDHPMGLAAAGGHLSTVLVLMELGCEATSNSVLNAIRGGHILVL
Sbjct:    1 FNPSIMTAAAQGGNVPAMQWIKDHCPPLAASSIWEFKAAVRAXXXXXXXXXXXLMEQEYFRPCPNRRRAYGIVLCAAARTGQAAVFVWVRDESSPWRGDDHPMGLAAAGGHLSTVLVLMELGCEATSNSVLNAIRGGHILVL 142
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|146163 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CDT1_9STRA5.280e-91100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_46contigContig_46:451114..451596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|146163|gw1.46.110.1
Hectar predicted targeting categoryother localisation
TranscriptId146485
TrackFilteredModels1
ProteinId146163
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|146163gene_4621Tribonema minus UTEX_B_3156 geneContig_46 451114..451596 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4621_1exon_4621_1Tribonema minus UTEX_B_3156 exonContig_46 451114..451390 +
exon_4621_2exon_4621_2Tribonema minus UTEX_B_3156 exonContig_46 451448..451596 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4621CDS_4621Tribonema minus UTEX_B_3156 CDSContig_46 451114..451390 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|146163Trimin1|146163|gw1.46.110.1Tribonema minus UTEX_B_3156 polypeptideContig_46 451114..451596 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4621 ID=mRNA_4621|Name=jgi.p|Trimin1|146163|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=426bp|location=Sequence derived from alignment at Contig_46:451114..451596+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTCAACCCCAGCATCATGACGGCAGCCGCCCAGGGGGGCAATGTGCCAGC
GATGCAGTGGATCAAGGACCACTGCCCTCCCCTCGCGGCTAGCAGCATAT
GGGAATTCAAGGCGGCTGTGCGTGCCGCGGAGTCGGGACACGTGCCCGCC
CTGAGCTGGCTGATGGAGCAGGAATACTTCCGGCCGTGCCCGAATCGCAG
ACGAGCCTACGGCATTGTCCTATGCGCAGCGGCGCGCACAGGGCAGGCCG
CCGTCTTCGTGTGGGTGCGCGATGAGTCCTCTCCTTGGCGCGGTGACGAT
CACCCGATGGGGCTGGCGGCGGCCGGCGGTCACTTGAGCACCGTGCTTGT
GCTGATGGAGCTGGGCTGCGAGGCAACTAGCAATTCCGTTCTAAACGCCA
TTCGCGGTGGACACATACTCGTTCTG
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protein sequence of jgi.p|Trimin1|146163

>Trimin1|146163|gw1.46.110.1 ID=Trimin1|146163|gw1.46.110.1|Name=jgi.p|Trimin1|146163|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=142bp
FNPSIMTAAAQGGNVPAMQWIKDHCPPLAASSIWEFKAAVRAAESGHVPA
LSWLMEQEYFRPCPNRRRAYGIVLCAAARTGQAAVFVWVRDESSPWRGDD
HPMGLAAAGGHLSTVLVLMELGCEATSNSVLNAIRGGHILVL
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mRNA from alignment at Contig_46:451114..451596+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4621 ID=mRNA_4621|Name=jgi.p|Trimin1|146163|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=483bp|location=Sequence derived from alignment at Contig_46:451114..451596+ (Tribonema minus UTEX_B_3156 )
TTCAACCCCAGCATCATGACGGCAGCCGCCCAGGGGGGCAATGTGCCAGC
GATGCAGTGGATCAAGGACCACTGCCCTCCCCTCGCGGCTAGCAGCATAT
GGGAATTCAAGGCGGCTGTGCGTGCCGCGGAGTCGGGACACGTGCCCGCC
CTGAGCTGGCTGATGGAGCAGGAATACTTCCGGCCGTGCCCGAATCGCAG
ACGAGCCTACGGCATTGTCCTATGCGCAGCGGCGCGCACAGGGCAGGCCG
CCGTCTTCGTGTGGGTGCGCGATGAGTGTATGTGGCTGCGCCCGTACGCT
AATCGCCCCGAGTTACCCCCTCATAGCTCGTCAGCCTCTCCTTGGCGCGG
TGACGATCACCCGATGGGGCTGGCGGCGGCCGGCGGTCACTTGAGCACCG
TGCTTGTGCTGATGGAGCTGGGCTGCGAGGCAACTAGCAATTCCGTTCTA
AACGCCATTCGCGGTGGACACATACTCGTTCTG
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Coding sequence (CDS) from alignment at Contig_46:451114..451596+

>mRNA_4621 ID=mRNA_4621|Name=jgi.p|Trimin1|146163|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=426bp|location=Sequence derived from alignment at Contig_46:451114..451596+ (Tribonema minus UTEX_B_3156 )
TTCAACCCCAGCATCATGACGGCAGCCGCCCAGGGGGGCAATGTGCCAGC
GATGCAGTGGATCAAGGACCACTGCCCTCCCCTCGCGGCTAGCAGCATAT
GGGAATTCAAGGCGGCTGTGCGTGCCGCGGAGTCGGGACACGTGCCCGCC
CTGAGCTGGCTGATGGAGCAGGAATACTTCCGGCCGTGCCCGAATCGCAG
ACGAGCCTACGGCATTGTCCTATGCGCAGCGGCGCGCACAGGGCAGGCCG
CCGTCTTCGTGTGGGTGCGCGATGAGTCCTCTCCTTGGCGCGGTGACGAT
CACCCGATGGGGCTGGCGGCGGCCGGCGGTCACTTGAGCACCGTGCTTGT
GCTGATGGAGCTGGGCTGCGAGGCAACTAGCAATTCCGTTCTAAACGCCA
TTCGCGGTGGACACATACTCGTTCTG
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