mRNA_4610 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|166761
Unique NamemRNA_4610
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|166761 vs. uniprot
Match: A0A835YRV8_9STRA (Armadillo-type protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRV8_9STRA)

HSP 1 Score: 110 bits (276), Expect = 9.010e-25
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1 
Query:    1 MRQYAEQTTGSPQAAGEIVAAMQAHVPNSEVQQHGAWAVAILAAKNDENRRTXXXXXXXXXXXXXXXXXXXXXXXXXXXLVAVVNLAAN 267
            MRQYAEQTTGSPQAAGEIVAAMQAHVPNSEVQQHGAWAVAILAAKNDENRRTXXXXXXXXXXXXXXXXXXXXXXXXXXXLVAVVNLAAN
Sbjct:    1 MRQYAEQTTGSPQAAGEIVAAMQAHVPNSEVQQHGAWAVAILAAKNDENRRTXXXXXXXXXXXXXXXXXXXXXXXXXXXLVAVVNLAAN 89
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|166761 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YRV8_9STRA9.010e-25100.00Armadillo-type protein (Fragment) n=1 Tax=Tribonem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_46contigContig_46:407878..408792 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|166761|e_gw1.46.60.1
Hectar predicted targeting categoryother localisation
TranscriptId167083
TrackFilteredModels1
ProteinId166761
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166761gene_4610Tribonema minus UTEX_B_3156 geneContig_46 407878..408792 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4610_1exon_4610_1Tribonema minus UTEX_B_3156 exonContig_46 407878..408792 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4610CDS_4610Tribonema minus UTEX_B_3156 CDSContig_46 407878..408792 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166761Trimin1|166761|e_gw1.46.60.1Tribonema minus UTEX_B_3156 polypeptideContig_46 407878..408792 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4610 ID=mRNA_4610|Name=jgi.p|Trimin1|166761|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=915bp|location=Sequence derived from alignment at Contig_46:407878..408792- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGCAGTATGCCGAACAGACCACTGGCAGCCCACAGGCAGCTGGCGA
GATAGTTGCTGCTATGCAGGCCCACGTGCCCAACAGCGAAGTGCAGCAGC
ATGGAGCGTGGGCCGTGGCGATCCTTGCTGCCAAAAACGACGAGAACAGG
AGGACCCTCGGCTCTGCAGGCGCGTGCGCGGCGGTGCTGGGCGCAATGCA
GGCCCACTTGTCCAGCAGCGAAGTGCAGCACCGGGGACTAGTGGCCGTGG
TTAACCTTGCTGCCAACGACGACAACGGGAGGACCCTCGGCTCGGCAGGC
GCGTGCGCGGCGGTGGTGGGCGCCATGCAGGCCCACGTGTCCAACAGCGA
AGTGCGGCAGTATGGAGCGTGGGCCGTGGCGAACCTTGCTGCCAATAACG
ACGACAACAGGAGGACCCTCGGCTCTGCAGGCGCGTGCGCGGCGGTGGTG
GGCGCCATGCAGGCCCACGTGTCCAACAGCGAAGTGCAGCAGTATGGAGC
GTGGGCCGTGGCGAACCTTGCTGCCAATAACGACGACAACAGGAGGACCC
TCGGCTCTGCAGGCGCGTGCGCGGCGGTGGTGGGCGCAATGCAGGCCCAC
TTGTCCAGCAGCGAAGTGCAGCAGTATGGAGCGTGGGCCGTGGCGAACCT
TGCTGCCAATAACGACGACAACAGGAGGACCCTCGGCTCTGCAGGCGCGT
GCGCGGCGGTGCTGGGCGCAATGCAGGCCCACTTGTCCAGCAGCGAAGTG
CAGCACCGGGGACTAGTGGCCGTGGTTATCCTTGCTGCCAACGACGAAAA
CGGGAGGACCCTCGGCTCGGCAGGCGTGTGCGCGGCGGTGGTGGGCGCCA
TGCAGGCCCACGTGTCCAACAGCGAAGTGCAGCAGTATGGAGCGTGGGCC
GTGGCGAACCTTGCT
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protein sequence of jgi.p|Trimin1|166761

>Trimin1|166761|e_gw1.46.60.1 ID=Trimin1|166761|e_gw1.46.60.1|Name=jgi.p|Trimin1|166761|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=305bp
MRQYAEQTTGSPQAAGEIVAAMQAHVPNSEVQQHGAWAVAILAAKNDENR
RTLGSAGACAAVLGAMQAHLSSSEVQHRGLVAVVNLAANDDNGRTLGSAG
ACAAVVGAMQAHVSNSEVRQYGAWAVANLAANNDDNRRTLGSAGACAAVV
GAMQAHVSNSEVQQYGAWAVANLAANNDDNRRTLGSAGACAAVVGAMQAH
LSSSEVQQYGAWAVANLAANNDDNRRTLGSAGACAAVLGAMQAHLSSSEV
QHRGLVAVVILAANDENGRTLGSAGVCAAVVGAMQAHVSNSEVQQYGAWA
VANLA
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mRNA from alignment at Contig_46:407878..408792-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4610 ID=mRNA_4610|Name=jgi.p|Trimin1|166761|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=915bp|location=Sequence derived from alignment at Contig_46:407878..408792- (Tribonema minus UTEX_B_3156 )
ATGAGGCAGTATGCCGAACAGACCACTGGCAGCCCACAGGCAGCTGGCGA
GATAGTTGCTGCTATGCAGGCCCACGTGCCCAACAGCGAAGTGCAGCAGC
ATGGAGCGTGGGCCGTGGCGATCCTTGCTGCCAAAAACGACGAGAACAGG
AGGACCCTCGGCTCTGCAGGCGCGTGCGCGGCGGTGCTGGGCGCAATGCA
GGCCCACTTGTCCAGCAGCGAAGTGCAGCACCGGGGACTAGTGGCCGTGG
TTAACCTTGCTGCCAACGACGACAACGGGAGGACCCTCGGCTCGGCAGGC
GCGTGCGCGGCGGTGGTGGGCGCCATGCAGGCCCACGTGTCCAACAGCGA
AGTGCGGCAGTATGGAGCGTGGGCCGTGGCGAACCTTGCTGCCAATAACG
ACGACAACAGGAGGACCCTCGGCTCTGCAGGCGCGTGCGCGGCGGTGGTG
GGCGCCATGCAGGCCCACGTGTCCAACAGCGAAGTGCAGCAGTATGGAGC
GTGGGCCGTGGCGAACCTTGCTGCCAATAACGACGACAACAGGAGGACCC
TCGGCTCTGCAGGCGCGTGCGCGGCGGTGGTGGGCGCAATGCAGGCCCAC
TTGTCCAGCAGCGAAGTGCAGCAGTATGGAGCGTGGGCCGTGGCGAACCT
TGCTGCCAATAACGACGACAACAGGAGGACCCTCGGCTCTGCAGGCGCGT
GCGCGGCGGTGCTGGGCGCAATGCAGGCCCACTTGTCCAGCAGCGAAGTG
CAGCACCGGGGACTAGTGGCCGTGGTTATCCTTGCTGCCAACGACGAAAA
CGGGAGGACCCTCGGCTCGGCAGGCGTGTGCGCGGCGGTGGTGGGCGCCA
TGCAGGCCCACGTGTCCAACAGCGAAGTGCAGCAGTATGGAGCGTGGGCC
GTGGCGAACCTTGCT
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Coding sequence (CDS) from alignment at Contig_46:407878..408792-

>mRNA_4610 ID=mRNA_4610|Name=jgi.p|Trimin1|166761|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=915bp|location=Sequence derived from alignment at Contig_46:407878..408792- (Tribonema minus UTEX_B_3156 )
ATGAGGCAGTATGCCGAACAGACCACTGGCAGCCCACAGGCAGCTGGCGA
GATAGTTGCTGCTATGCAGGCCCACGTGCCCAACAGCGAAGTGCAGCAGC
ATGGAGCGTGGGCCGTGGCGATCCTTGCTGCCAAAAACGACGAGAACAGG
AGGACCCTCGGCTCTGCAGGCGCGTGCGCGGCGGTGCTGGGCGCAATGCA
GGCCCACTTGTCCAGCAGCGAAGTGCAGCACCGGGGACTAGTGGCCGTGG
TTAACCTTGCTGCCAACGACGACAACGGGAGGACCCTCGGCTCGGCAGGC
GCGTGCGCGGCGGTGGTGGGCGCCATGCAGGCCCACGTGTCCAACAGCGA
AGTGCGGCAGTATGGAGCGTGGGCCGTGGCGAACCTTGCTGCCAATAACG
ACGACAACAGGAGGACCCTCGGCTCTGCAGGCGCGTGCGCGGCGGTGGTG
GGCGCCATGCAGGCCCACGTGTCCAACAGCGAAGTGCAGCAGTATGGAGC
GTGGGCCGTGGCGAACCTTGCTGCCAATAACGACGACAACAGGAGGACCC
TCGGCTCTGCAGGCGCGTGCGCGGCGGTGGTGGGCGCAATGCAGGCCCAC
TTGTCCAGCAGCGAAGTGCAGCAGTATGGAGCGTGGGCCGTGGCGAACCT
TGCTGCCAATAACGACGACAACAGGAGGACCCTCGGCTCTGCAGGCGCGT
GCGCGGCGGTGCTGGGCGCAATGCAGGCCCACTTGTCCAGCAGCGAAGTG
CAGCACCGGGGACTAGTGGCCGTGGTTATCCTTGCTGCCAACGACGAAAA
CGGGAGGACCCTCGGCTCGGCAGGCGTGTGCGCGGCGGTGGTGGGCGCCA
TGCAGGCCCACGTGTCCAACAGCGAAGTGCAGCAGTATGGAGCGTGGGCC
GTGGCGAACCTTGCT
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