mRNA_4561 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349600
Unique NamemRNA_4561
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|349600 vs. uniprot
Match: A0A835YT76_9STRA (DH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT76_9STRA)

HSP 1 Score: 330 bits (847), Expect = 4.550e-113
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 2 
Query:  173 MVRTTGRLVFGGSGPATEQQDDDDKLQQLTKEEGNRSKAVAELLSTEKTFVSEMTAAVLVLQQGLVPFAAAHTRFHLLVEVFLEPLRRYGAELAAEAEAAAEDRADAGKARLAVTPEDLTVIFSNVEQLLGFNRSFLADLEAAMAAGGQGAVVEVFLKAAPFMRMFSVYVNNFDRAR 703
            MVRTTGRLVFGGSGPATEQQDDDDKLQQLTKEEGNRSKAVAELLSTEKTFVSEMTAAVLVLQQGLVPFAAAHTRFHLLVEVFLEPLRRYGAELAAEAEAAAEDRADAGKARLAVTPEDLTVIFSNVEQLLGFNRSFLADLEAAMAAGGQGAVVEVFLKAAPFMRMFSVYVNNFDRAR
Sbjct:    1 MVRTTGRLVFGGSGPATEQQDDDDKLQQLTKEEGNRSKAVAELLSTEKTFVSEMTAAVLVLQQGLVPFAAAHTRFHLLVEVFLEPLRRYGAELAAEAEAAAEDRADAGKARLAVTPEDLTVIFSNVEQLLGFNRSFLADLEAAMAAGGQGAVVEVFLKAAPFMRMFSVYVNNFDRAR 177
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BLAST of jgi.p|Trimin1|349600 vs. uniprot
Match: A0A835Z4U4_9STRA (DH domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4U4_9STRA)

HSP 1 Score: 187 bits (474), Expect = 1.150e-56
Identity = 110/134 (82.09%), Postives = 110/134 (82.09%), Query Frame = 2 
Query:  173 MVRTTGRLVFGGSGPATEQQDDDDKLQQLTKEEGNRSKAVAELLSTEKTFVSEMTAAVLVLQQGLVPFAAAHTRFHLLVEVFLEPLRRYGAELAAEAEAAAEDRADAGKARLAVTPEDLTVIFSNVEQLLGFNR 574
            MV TTGRLVFGGSGPA EQQDDDDKLQQL KEEGNRSKAVAELLSTEKTFVSEMT                     LLVEVFLEPLRRYGAELAAEAEAAAEDRADAGKARLAVTPEDLTVIFSNVEQLLGFNR
Sbjct:    1 MVTTTGRLVFGGSGPA-EQQDDDDKLQQLAKEEGNRSKAVAELLSTEKTFVSEMT---------------------LLVEVFLEPLRRYGAELAAEAEAAAEDRADAGKARLAVTPEDLTVIFSNVEQLLGFNR 112
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BLAST of jgi.p|Trimin1|349600 vs. uniprot
Match: D8LKY8_ECTSI (Pleckstrin homology (PH) domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKY8_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 7.060e-8
Identity = 63/201 (31.34%), Postives = 83/201 (41.29%), Query Frame = 2 
Query:  269 EGNRSKAVAELLSTEKTFVSEMTAAVLVLQQGLVPFAAAHTRFHLLVEVFLEPLRRYGAELAAEAEAAAEDRADAG---KARLA--VTPEDLTVIFSNVEQLLGFNRSFLADLEAA----MAAGGQGAV-----------------------------------------------VEVFLKAAPFMRMFSVYVNNFDRAR 703
            E  R +AVAELLS+E  +VS++                      LLV+VFL PL+R+  EL A+ +   +  A  G   +AR A   T  D   IF+N  +L  FNR FL DL  A       G  G V                                               ++VFLK+APF++M+S YVNNFD AR
Sbjct:    7 ERRRDEAVAELLSSEAEYVSDLK---------------------LLVDVFLLPLQRWAKELEAQQDPVLDHAAVHGGSIQARSAPSFTQADCKEIFANTLELAHFNRQFLLDLRKAHGGPFVPGSVGVVSPVSTSTECNEWRKVTSAGRDCLEGEDIGDPLRPTSPNISEKGPRQMLQVFLKSAPFLKMYSEYVNNFDTAR 186
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BLAST of jgi.p|Trimin1|349600 vs. uniprot
Match: A0A835Z6E2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6E2_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.620e-7
Identity = 29/61 (47.54%), Postives = 39/61 (63.93%), Query Frame = 2 
Query:  512 VTPEDLTVIFSNVEQLLGFNRSFLADLEAAMAAGGQGAVVEVFLKAAPFMRMFSVYVNNFD 694
            VT  +L  +FSN EQ+  FNR  L DLE A   GG  A+++  LKAAPF +M+  +V NF+
Sbjct:  172 VTRAELLSVFSNTEQIAAFNRQLLLDLERARRDGGNKAMLDQLLKAAPFFKMYGTFVRNFE 232
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BLAST of jgi.p|Trimin1|349600 vs. uniprot
Match: A0A4P9ZJB8_9FUNG (Dbl homology domain-containing protein n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZJB8_9FUNG)

HSP 1 Score: 57.4 bits (137), Expect = 7.080e-6
Identity = 33/82 (40.24%), Postives = 49/82 (59.76%), Query Frame = 2 
Query:  491 AGKARLAVTPEDLTVIFSNVEQLLGFNRS-FLADLEAAMAAGGQGAVVEVFLKAAPFMRMFSVYVNNFDRAR*VFHDNESLR 733
            A K R  ++P ++  IF NV+ +L F+R   L +LE  +    +  V +VFL+ A F+R++SVYVNNFD A  +  D E  R
Sbjct:  302 ATKFRGVLSPVEMKTIFGNVDTILMFHRDHILPELEQTIRDDAKARVGKVFLRNAAFIRIYSVYVNNFDHAAQLLTDLEKSR 383
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349600 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YT76_9STRA4.550e-113100.00DH domain-containing protein n=1 Tax=Tribonema min... [more]
A0A835Z4U4_9STRA1.150e-5682.09DH domain-containing protein (Fragment) n=1 Tax=Tr... [more]
D8LKY8_ECTSI7.060e-831.34Pleckstrin homology (PH) domain-containing protein... [more]
A0A835Z6E2_9STRA1.620e-747.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4P9ZJB8_9FUNG7.080e-640.24Dbl homology domain-containing protein n=1 Tax=Dim... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_46contigContig_46:95641..99283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349600|estExt_Genemark1.C_Ctg_460017
DescriptionRho guanyl-nucleotide exchange factor activity
COG categoryT
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5422@1|root,KOG4424@2759|Eukaryota
Evalue1.42e-09
Seed ortholog2880.D8LKY8
Hectar predicted targeting categoryother localisation
TranscriptId349922
TrackFilteredModels1
ProteinId349600
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349600gene_4561Tribonema minus UTEX_B_3156 geneContig_46 95641..99283 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349600Trimin1|349600|estExt_Genemark1.C_Ctg_460017Tribonema minus UTEX_B_3156 polypeptideContig_46 95813..99249 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4561_1exon_4561_1Tribonema minus UTEX_B_3156 exonContig_46 95641..95977 +
exon_4561_2exon_4561_2Tribonema minus UTEX_B_3156 exonContig_46 97123..97146 +
exon_4561_3exon_4561_3Tribonema minus UTEX_B_3156 exonContig_46 97287..97325 +
exon_4561_4exon_4561_4Tribonema minus UTEX_B_3156 exonContig_46 97449..97621 +
exon_4561_5exon_4561_5Tribonema minus UTEX_B_3156 exonContig_46 99117..99283 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_4561UTR5_4561Tribonema minus UTEX_B_3156 five_prime_UTRContig_46 95641..95812 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4561CDS_4561Tribonema minus UTEX_B_3156 CDSContig_46 95813..95977 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_4561UTR3_4561Tribonema minus UTEX_B_3156 three_prime_UTRContig_46 99250..99283 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4561 ID=mRNA_4561|Name=jgi.p|Trimin1|349600|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=740bp|location=Sequence derived from alignment at Contig_46:95641..99283+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TATACAACTTCAAAGTTCGAGCTCAGCCTTGAGCGCCGAGAGGAGGGTGC
ACGAGGCGATACACAGCACCTTTTGGCGGGGCTTAGAAAGCAGCATGAGA
GCTCAGAGCGGGGGCGGATTTGATTCATGCGCTTCCACGACAATGCCCTC
ACTCGATGACAGATAACGTGCAATGGTCCGGACAACGGGTCGGTTGGTGT
TCGGGGGCTCTGGCCCGGCTACGGAGCAGCAAGACGATGATGATAAGCTG
CAGCAGCTGACGAAAGAAGAGGGAAACAGGAGCAAAGCCGTGGCGGAGCT
GCTCAGCACGGAGAAAACCTTCGTGTCTGAGATGACGGCGGCGGTCCTGG
TGCTGCAGCAGGGCCTGGTTCCATTTGCCGCTGCGCACACCCGCTTCCAC
CTGCTCGTGGAGGTCTTCCTGGAGCCGCTGCGACGCTACGGCGCGGAGCT
CGCAGCGGAGGCAGAGGCTGCAGCGGAGGACAGGGCCGATGCCGGCAAGG
CACGCTTGGCTGTTACGCCGGAGGACTTGACTGTTATATTCAGCAACGTG
GAGCAGTTGCTGGGCTTCAACAGGTCTTTCCTAGCGGATCTGGAGGCTGC
CATGGCGGCGGGGGGTCAGGGGGCGGTTGTTGAAGTTTTCCTCAAGGCCG
CGCCGTTCATGCGAATGTTCAGCGTCTACGTCAACAACTTTGACAGGGCC
CGATGAGTTTTTCACGATAATGAATCGTTGCGATAAATGA
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protein sequence of jgi.p|Trimin1|349600

>Trimin1|349600|estExt_Genemark1.C_Ctg_460017 ID=Trimin1|349600|estExt_Genemark1.C_Ctg_460017|Name=jgi.p|Trimin1|349600|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=178bp
MVRTTGRLVFGGSGPATEQQDDDDKLQQLTKEEGNRSKAVAELLSTEKTF
VSEMTAAVLVLQQGLVPFAAAHTRFHLLVEVFLEPLRRYGAELAAEAEAA
AEDRADAGKARLAVTPEDLTVIFSNVEQLLGFNRSFLADLEAAMAAGGQG
AVVEVFLKAAPFMRMFSVYVNNFDRAR*
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mRNA from alignment at Contig_46:95641..99283+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4561 ID=mRNA_4561|Name=jgi.p|Trimin1|349600|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3643bp|location=Sequence derived from alignment at Contig_46:95641..99283+ (Tribonema minus UTEX_B_3156 )
TATACAACTTCAAAGTTCGAGCTCAGCCTTGAGCGCCGAGAGGAGGGTGC
ACGAGGCGATACACAGCACCTTTTGGCGGGGCTTAGAAAGCAGCATGAGA
GCTCAGAGCGGGGGCGGATTTGATTCATGCGCTTCCACGACAATGCCCTC
ACTCGATGACAGATAACGTGCAATGGTCCGGACAACGGGTCGGTTGGTGT
TCGGGGGCTCTGGCCCGGCTACGGAGCAGCAAGACGATGATGATAAGCTG
CAGCAGCTGACGAAAGAAGAGGGAAACAGGAGCAAAGCCGTGGCGGAGCT
GCTCAGCACGGAGAAAACCTTCGTGTCTGAGATGACGGTGAGGTCTTCGC
CAGACGCGCAACTGACAAAAGTTCATCATGGAGCAGTGTATCGTGCTCCA
GCTAATGTGTGCAGTGACATGCTTCACAGCAATTAACGTCACCGCAATGC
GTTCCTCACACGTGCTTTTTTAAATGCTATACAGAAGGAGAGGACACTCG
TTTCTTCACAACTTCTTTGGTGTAGTTTTCGTTTTCGCTGCCTTCCTCAG
TAGAAAACGAAATCTCTGTTAGATTCAGCAGTGCAGGCAAATCATTCGTG
CGATTACGTAATTGTTAATGACACTGCTGAGTGCTCCAGCGCACCACTTG
TGCAGCGTACCATAAGTAGAAATCAGTTGCACGCAGCGCATGATTGTCAA
ATGTTGCCTCAGCTAGCAAAGACTCACTGATTGAGGTTTCCATATTATGT
GGCGACGTTGCACTTGTGCAAATGCCGTGCTTCGCTTTTGTGCATCAAAC
GGGCATATCAAACTTGGCCGCACATGCGAACAGAGTTTGCTCCGTGCCTG
CCAGCTCCAGTTTCACATCAGACTTTCATAACGCCATGTCGAAGCCACCA
TGGTGCTGTCGTTGGCCGCCATGACACGCAATGAAGACCTTGAAAGCTCC
GTTCTCATACAAACATTGCGCTGACATGACATGCAACGAAAACCTTTGCA
GCCCAATTCTCAGGGAAACAGTACGCTGACATGATACGCAATACACCCCT
AAAGTACGCAGGAAACGGTTACGCTGACGCATGGTAACTGCCAATTTACA
CCCTCCAGTAGCCGGAGCTGCAAATGCGTATACCACACAGCTGTTGCGAC
ATTGCATTCTTGCTGTTGCGTTACCTTTTCAGCTTGCTCCACGAGGCTTG
CGGGATCAGCTTTGTGCATCACATGTTGCACCCCCCTACCGTCATCGTGT
GAGGCCTGAGTCGTGTATATGGAAGCTATTGTACAGGGTGTGGGGGGTAA
TCGCCGCGCTGGTCAGATTTTCATGCGCGCTTGACGCAGCTTGCTGCGGT
CACACGTGGTGCACCATGGGCGAGCCAGAGGAGGCTGCTGACTGCTGTTG
CACATCAGAGCTGTAACATTGCAGTAGCACGCCAGAAGCAGACAGCTCCA
AAGTCACTGCAGCTGCCGCTCTAGCGCGCCAGGCGGCGGTCCTGGTGCTG
CAGCAGGTCCGTCTCCTGCCGCATCACCTGATCGCACTCGCAAGGAACCT
GCATGCCAAACTCAAGCTTCGCAGGCTATTGCAAGGTCGTTTAGACCCGC
ACATCACACTGCAGACGCGGTTTGCGCCCCTCATCTGCTGCTGCAGGGCC
TGGTTCCATTTGCCGCTGCGCACACCCGCTTCCACGTGCAGAAACAACCT
GCTCGCTGTGTTTCTTACAAAACGTGCCGCATGCGTGCACGCACATATGT
ACGTATCCAGTTTTACATGACAGTGCTCAACTTTGCGCCCCTCGTCACTG
TCCTGCAGCTGCTCGTGGAGGTCTTCCTGGAGCCGCTGCGACGCTACGGC
GCGGAGCTCGCAGCGGAGGCAGAGGCTGCAGCGGAGGACAGGGCCGATGC
CGGCAAGGCACGCTTGGCTGTTACGCCGGAGGACTTGACTGTTATATTCA
GCAACGTGGAGCAGTTGCTGGGCTTCAACAGGTGCGTGCGTGCATGCTGA
TCTGATTTGAAATTCATCTTGAAGTATGCAGCAATGTTCAGAGCTGCTCG
GTTGCGACGGGTGTGCACGTGCGCGCCGCCTAGCGTTGCCAGCGCCCGGC
ACCTCAGCTTTGTGCTGTGGTAGGTAGGTATACTGCGTGTGCAACTTCAA
CAAACCGTGGAGCGTCACCGTTGATCAGTGCTCAGTGCAGCGCCTCACAC
GAGTGCGCTTGAACAGTGGCAACATGGGTATGTGGCGTGCAACTTCCACA
AGAGCGGAGCGTCAGCGGCACAGCTGCGGCAGGTTCAATGTGATGCTCGG
CGATGTGCACGTGTGGAAGTGTAACGGTGCCCTCGTTGCTGCATTGCGCG
TGCAGCAAGAGGGGTCAGGCTAGCGTTGCGGTAGCAATAGGCCAGGGTTG
TGCAGACAATGGTTCAGTTATGGTCGTGCACGCACCTCACTGGACTAGTG
GCCACCAGCGCCCTTGCGCTTCCACAGCCAGCTGCTGTGAGCGGTGCGGG
AGGCAATGCACATTCATGCTGAGCACTGGTGCAGCTGTTGCAGTAGCTTC
AACGCGAGAAAGTTGCACCTCGATGACGTCGACCATACGTACTGAAGCAT
TTGCCACGACACCGCAGAGGCCGCTTGTAGGCTGCGTGACCGTACAACTA
TGGCTGATGCACACGCGGCTTCTTGACGTCATTAGGCGATGTTGAAGATG
AGTGTTGAAGATGAGTGTGTATGTGCCCTTGGCAGCGCTCAACATAAATG
TATCCTCAATCAATCTCAGGCTCATGTTTAGGGACTGTTGTCGAGGCGCA
GAGAAGGGGGTGAGATGTCCTGTTGACGATCAGGGACACAGCATCGACTG
TCAAGGCTGCTTGAGCATACCAAGACCCAACCAAGTATGAGCGTCCAATG
TGTAGTATCTGCCTGAATGGCTCAAAAAGCCATTCCGGCTCCACTTTGGA
GAACCAGGAGTAAATAAGTGGGTCAGACTGTGTAGTACCTGCCTGAGTGG
CTCAAAAGCCATTCAGGCCCCACTTTGGAGGACCAGGAGTAAACAAGTGG
GTCTGACCGCCTTCGGCCGTCTCATCTATTGCACTTGTTTGCTGACGGCA
CAGATCGTTTCTGGCGTAACTGGGAGGCTGCCATGGCGGCTCGAGCATAC
CAAGTACCTTTGATCATCCAATGCTGACATGGTGTTGTACTCGGCAAGTA
CCTGCTCAAGTGGCTCAGGCCCCACTATGGAAAACCAGGGCCAAGGCGTA
AATATGCGGGCTTGTGCACCTTCAGCCGTTTCATTTATTGCACTGATATG
CTGACGGCACACAGGTCGTTTCTGACGCATTGCACTTGTATGCTGACAGC
ACAGGTCATTTCTGGCGTCTTGCACTGCTATGCTGACAGCACAGATCATT
TCTGGCGTCTTGCACTGCCATGCTGACAGCACAGGTCATTTCTGGTGTAT
CGCACTTGTATTTTGACGGCAAACAGGTCTTTCCTAGCGGATCTGGAGGC
TGCCATGGCGGCGGGGGGTCAGGGGGCGGTTGTTGAAGTTTTCCTCAAGG
CCGCGCCGTTCATGCGAATGTTCAGCGTCTACGTCAACAACTTTGACAGG
GCCCGATGAGTTTTTCACGATAATGAATCGTTGCGATAAATGA
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Coding sequence (CDS) from alignment at Contig_46:95641..99283+

>mRNA_4561 ID=mRNA_4561|Name=jgi.p|Trimin1|349600|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=534bp|location=Sequence derived from alignment at Contig_46:95641..99283+ (Tribonema minus UTEX_B_3156 )
ATGGTCCGGACAACGGGTCGGTTGGTGTTCGGGGGCTCTGGCCCGGCTAC
GGAGCAGCAAGACGATGATGATAAGCTGCAGCAGCTGACGAAAGAAGAGG
GAAACAGGAGCAAAGCCGTGGCGGAGCTGCTCAGCACGGAGAAAACCTTC
GTGTCTGAGATGACGGCGGCGGTCCTGGTGCTGCAGCAGGGCCTGGTTCC
ATTTGCCGCTGCGCACACCCGCTTCCACCTGCTCGTGGAGGTCTTCCTGG
AGCCGCTGCGACGCTACGGCGCGGAGCTCGCAGCGGAGGCAGAGGCTGCA
GCGGAGGACAGGGCCGATGCCGGCAAGGCACGCTTGGCTGTTACGCCGGA
GGACTTGACTGTTATATTCAGCAACGTGGAGCAGTTGCTGGGCTTCAACA
GGTCTTTCCTAGCGGATCTGGAGGCTGCCATGGCGGCGGGGGGTCAGGGG
GCGGTTGTTGAAGTTTTCCTCAAGGCCGCGCCGTTCATGCGAATGTTCAG
CGTCTACGTCAACAACTTTGACAGGGCCCGATGA
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