mRNA_4556 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|166751
Unique NamemRNA_4556
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|166751 vs. uniprot
Match: A0A836CCP2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCP2_9STRA)

HSP 1 Score: 124 bits (312), Expect = 5.950e-36
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:    1 MRLRLCDQWWSPRHMLTHTEIKAFACGFDLCEYRSTEKSTMVNHERXXXXXXXXXXXXXXXXKTFTATSTRDRH 222
            MRLRLCDQWWSPRHMLTHTEIKAFACGFDLCEYRSTEKSTMVNHERXXXXXXXXXXXXXXXXKTFTATSTRDRH
Sbjct:    1 MRLRLCDQWWSPRHMLTHTEIKAFACGFDLCEYRSTEKSTMVNHERXXXXXXXXXXXXXXXXKTFTATSTRDRH 74
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|166751 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CCP2_9STRA5.950e-36100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_46contigContig_46:75230..75451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|166751|e_gw1.46.171.1
Hectar predicted targeting categoryother localisation
TranscriptId167073
TrackFilteredModels1
ProteinId166751
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166751gene_4556Tribonema minus UTEX_B_3156 geneContig_46 75230..75451 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4556_1exon_4556_1Tribonema minus UTEX_B_3156 exonContig_46 75230..75451 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4556CDS_4556Tribonema minus UTEX_B_3156 CDSContig_46 75230..75451 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166751Trimin1|166751|e_gw1.46.171.1Tribonema minus UTEX_B_3156 polypeptideContig_46 75230..75451 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4556 ID=mRNA_4556|Name=jgi.p|Trimin1|166751|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=222bp|location=Sequence derived from alignment at Contig_46:75230..75451- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGACTTCGCCTCTGTGACCAGTGGTGGTCTCCGCGCCACATGCTGAC
GCATACTGAAATCAAGGCATTTGCATGTGGCTTCGACTTATGTGAATATC
GAAGCACAGAGAAGTCAACTATGGTAAATCACGAGCGAACACATACGGCG
GCGCGGCCTTACTCTTGTTTGGTCAACGACTGCGACAAGACCTTTACAGC
CACAAGTACCAGAGACAGACAT
back to top

protein sequence of jgi.p|Trimin1|166751

>Trimin1|166751|e_gw1.46.171.1 ID=Trimin1|166751|e_gw1.46.171.1|Name=jgi.p|Trimin1|166751|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=74bp
MRLRLCDQWWSPRHMLTHTEIKAFACGFDLCEYRSTEKSTMVNHERTHTA
ARPYSCLVNDCDKTFTATSTRDRH
back to top

mRNA from alignment at Contig_46:75230..75451-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4556 ID=mRNA_4556|Name=jgi.p|Trimin1|166751|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=222bp|location=Sequence derived from alignment at Contig_46:75230..75451- (Tribonema minus UTEX_B_3156 )
ATGCGACTTCGCCTCTGTGACCAGTGGTGGTCTCCGCGCCACATGCTGAC
GCATACTGAAATCAAGGCATTTGCATGTGGCTTCGACTTATGTGAATATC
GAAGCACAGAGAAGTCAACTATGGTAAATCACGAGCGAACACATACGGCG
GCGCGGCCTTACTCTTGTTTGGTCAACGACTGCGACAAGACCTTTACAGC
CACAAGTACCAGAGACAGACAT
back to top

Coding sequence (CDS) from alignment at Contig_46:75230..75451-

>mRNA_4556 ID=mRNA_4556|Name=jgi.p|Trimin1|166751|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=222bp|location=Sequence derived from alignment at Contig_46:75230..75451- (Tribonema minus UTEX_B_3156 )
ATGCGACTTCGCCTCTGTGACCAGTGGTGGTCTCCGCGCCACATGCTGAC
GCATACTGAAATCAAGGCATTTGCATGTGGCTTCGACTTATGTGAATATC
GAAGCACAGAGAAGTCAACTATGGTAAATCACGAGCGAACACATACGGCG
GCGCGGCCTTACTCTTGTTTGGTCAACGACTGCGACAAGACCTTTACAGC
CACAAGTACCAGAGACAGACAT
back to top