mRNA_4521 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|166035
Unique NamemRNA_4521
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|166035 vs. uniprot
Match: A0A835YX16_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX16_9STRA)

HSP 1 Score: 337 bits (864), Expect = 2.190e-109
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1 
Query:    1 MKWCDDHRSYAKCRREGCDKQPSFNVRGAGAQWCSEHKSPGMIDITSARCKCGRAGPSLGQPGDRKPTCCAKCREPGMVSLRKVHPKCRSEGCEKRPTFNVPGAGAQWCAAHKGPEMIDCVSARCKCGSLVPRYGFEGDRRPTSCLRC 444
            MKWCDDHRSYAKCRREGCDKQPSFNVRGAGAQWCSEHKSPGMIDITSARCKCGRAGPSLGQPGDRKPTCCAKCREPGMVSLRKVHPKCRSEGCEKRPTFNVPGAGAQWCAAHKGPEMIDCVSARCKCGSLVPRYGFEGDRRPTSCLRC
Sbjct:    1 MKWCDDHRSYAKCRREGCDKQPSFNVRGAGAQWCSEHKSPGMIDITSARCKCGRAGPSLGQPGDRKPTCCAKCREPGMVSLRKVHPKCRSEGCEKRPTFNVPGAGAQWCAAHKGPEMIDCVSARCKCGSLVPRYGFEGDRRPTSCLRC 148
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BLAST of jgi.p|Trimin1|166035 vs. uniprot
Match: A0A835ZBE1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBE1_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 4.590e-10
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:    4 KWCDDHRSYAKCRREGCDKQPSFNVRGAGAQWCSEHKSPGMIDITSARC-KCGRAGPSLGQPGDRKPT 204
            KWC +H+ +  CR +GC K P +N+ GA AQWC EHK+  M D+   RC +CG   P  G   D +PT
Sbjct:  340 KWCGEHKRFQVCRHQGCSKAPIYNIPGAAAQWCREHKTGDMQDVAHKRCMRCGLKIPKFGTE-DGRPT 406
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BLAST of jgi.p|Trimin1|166035 vs. uniprot
Match: A0A836CPB0_9STRA (EsV-1-7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPB0_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.440e-9
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    4 KWCDDHRSYAKCRREGCDKQPSFNVRGAGAQWCSEHKSPGMIDITSARC 150
            KWCD+H+   +C+++GC+K+PS+N+ GAGAQ+C  H   GM DI   RC
Sbjct:   21 KWCDEHKRLDECKKDGCNKKPSYNIPGAGAQYCKNHAEEGMEDIVHKRC 69
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|166035 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YX16_9STRA2.190e-109100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZBE1_9STRA4.590e-1045.59Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CPB0_9STRA1.440e-951.02EsV-1-7 n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_41contigContig_41:929682..931007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|166035|e_gw1.41.198.1
Hectar predicted targeting categoryother localisation
TranscriptId166357
TrackFilteredModels1
ProteinId166035
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166035gene_4521Tribonema minus UTEX_B_3156 geneContig_41 929682..931007 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4521_1exon_4521_1Tribonema minus UTEX_B_3156 exonContig_41 929682..929929 +
exon_4521_2exon_4521_2Tribonema minus UTEX_B_3156 exonContig_41 930002..931007 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4521CDS_4521Tribonema minus UTEX_B_3156 CDSContig_41 929682..929929 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166035Trimin1|166035|e_gw1.41.198.1Tribonema minus UTEX_B_3156 polypeptideContig_41 929682..931007 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4521 ID=mRNA_4521|Name=jgi.p|Trimin1|166035|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1254bp|location=Sequence derived from alignment at Contig_41:929682..931007+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTGGTGCGACGACCACAGGAGCTACGCCAAGTGCAGGCGCGAGGG
CTGCGACAAGCAGCCTTCTTTCAACGTGCGGGGCGCCGGCGCCCAGTGGT
GCTCCGAACACAAGAGTCCCGGCATGATCGACATCACCAGCGCCAGGTGC
AAGTGCGGCAGAGCGGGGCCCTCGCTGGGGCAGCCGGGAGACCGGAAGCC
GACCTGCTGCGCGAAGTGCAGGGAACCGGGCATGGTCAGTCTCAGGAAGG
TCCACCCGAAGTGCAGGAGCGAGGGCTGCGAGAAGCGTCCGACGTTCAAC
GTGCCGGGTGCGGGCGCCCAGTGGTGCGCCGCCCACAAGGGCCCGGAGAT
GATCGACTGCGTGAGCGCGAGGTGCAAGTGCGGCAGTCTAGTGCCGCGGT
ACGGCTTCGAGGGAGACCGGCGGCCCACCAGCTGCCTGCGCTGCAAGCAG
CCAGACATGGTCGACCTCACGACCAAGCGCTGCGATTGCGGCAGAGCGCT
GCCGACGTTCGCCTTCGCCGGAGACCGGGCGTCGCGCTGCGCGAAGTGCA
GGGAGCCCGGAATGGTCGACGTCAGGAGCAAGAAGTGCAGGTGCGGCAGA
GCGTGCCCGACGTTCGGACTCGAGGGCCAGCGGCCGCAGTGCTGCGCGCA
ATGCAGAGAGCCGGGCATGGTCGACGTCAAGGGCAGGCGGTGCGCGTGCG
GCAAGACGCAACCGAATTTCGGACTCCCCGGCGACGACCGCGCGTCCTGC
TGCGCCTCGTGCAAGAGGGACGGCATGGTAGACATCAGGAGCAGGCGCTG
CGTCTGCGGCAAGTCTCAGCCGTCGTACGGCTTCGAGGGAGACCCACGCG
CCACGTGCTGCGCGAAATGCAGGAAGTCCGGCATGGTCGACGTCGTCAAC
GAGAGGTGCCGCTGCGGCCGCGCCCGCCCCAACTTCGGGCACGAGAGCGA
CGGCAAGGCCGTCTGCTGCGCCGCCTGCAAGGATCCCGACATGGTGAATG
TGAAGAGCACGGTGTGCGAGTGCGGCGCCGCTCAGCCGGGATTCGGTTTC
GAGAGCGACCCGAGGCCGACGCGGTGCGTCCGATGTCAACTTCCGGGGAT
GCTCGACATCAGGAACAGGCGGTGCCACTGCGGCTCGGCGGTGCCGAACT
TCGGCCACGACGGCGCCCCCCGCGCCACTCACTGCGCGCGATGCAAGGAG
GACGGCATGATCGACGTCAACAATCGGAGGTGCGAGCACGGGGGGTTCCT
GAAG
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protein sequence of jgi.p|Trimin1|166035

>Trimin1|166035|e_gw1.41.198.1 ID=Trimin1|166035|e_gw1.41.198.1|Name=jgi.p|Trimin1|166035|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=418bp
MKWCDDHRSYAKCRREGCDKQPSFNVRGAGAQWCSEHKSPGMIDITSARC
KCGRAGPSLGQPGDRKPTCCAKCREPGMVSLRKVHPKCRSEGCEKRPTFN
VPGAGAQWCAAHKGPEMIDCVSARCKCGSLVPRYGFEGDRRPTSCLRCKQ
PDMVDLTTKRCDCGRALPTFAFAGDRASRCAKCREPGMVDVRSKKCRCGR
ACPTFGLEGQRPQCCAQCREPGMVDVKGRRCACGKTQPNFGLPGDDRASC
CASCKRDGMVDIRSRRCVCGKSQPSYGFEGDPRATCCAKCRKSGMVDVVN
ERCRCGRARPNFGHESDGKAVCCAACKDPDMVNVKSTVCECGAAQPGFGF
ESDPRPTRCVRCQLPGMLDIRNRRCHCGSAVPNFGHDGAPRATHCARCKE
DGMIDVNNRRCEHGGFLK
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mRNA from alignment at Contig_41:929682..931007+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4521 ID=mRNA_4521|Name=jgi.p|Trimin1|166035|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1326bp|location=Sequence derived from alignment at Contig_41:929682..931007+ (Tribonema minus UTEX_B_3156 )
ATGAAGTGGTGCGACGACCACAGGAGCTACGCCAAGTGCAGGCGCGAGGG
CTGCGACAAGCAGCCTTCTTTCAACGTGCGGGGCGCCGGCGCCCAGTGGT
GCTCCGAACACAAGAGTCCCGGCATGATCGACATCACCAGCGCCAGGTGC
AAGTGCGGCAGAGCGGGGCCCTCGCTGGGGCAGCCGGGAGACCGGAAGCC
GACCTGCTGCGCGAAGTGCAGGGAACCGGGCATGGTCAGTCTCAGGAAGT
ACAAGCCGAAGCCGTGCGCGGCGGAGGGGTGCGACGCCCCCACCGCGCGC
AAGTGGTGCGGCGAGCACAGGGTCCACCCGAAGTGCAGGAGCGAGGGCTG
CGAGAAGCGTCCGACGTTCAACGTGCCGGGTGCGGGCGCCCAGTGGTGCG
CCGCCCACAAGGGCCCGGAGATGATCGACTGCGTGAGCGCGAGGTGCAAG
TGCGGCAGTCTAGTGCCGCGGTACGGCTTCGAGGGAGACCGGCGGCCCAC
CAGCTGCCTGCGCTGCAAGCAGCCAGACATGGTCGACCTCACGACCAAGC
GCTGCGATTGCGGCAGAGCGCTGCCGACGTTCGCCTTCGCCGGAGACCGG
GCGTCGCGCTGCGCGAAGTGCAGGGAGCCCGGAATGGTCGACGTCAGGAG
CAAGAAGTGCAGGTGCGGCAGAGCGTGCCCGACGTTCGGACTCGAGGGCC
AGCGGCCGCAGTGCTGCGCGCAATGCAGAGAGCCGGGCATGGTCGACGTC
AAGGGCAGGCGGTGCGCGTGCGGCAAGACGCAACCGAATTTCGGACTCCC
CGGCGACGACCGCGCGTCCTGCTGCGCCTCGTGCAAGAGGGACGGCATGG
TAGACATCAGGAGCAGGCGCTGCGTCTGCGGCAAGTCTCAGCCGTCGTAC
GGCTTCGAGGGAGACCCACGCGCCACGTGCTGCGCGAAATGCAGGAAGTC
CGGCATGGTCGACGTCGTCAACGAGAGGTGCCGCTGCGGCCGCGCCCGCC
CCAACTTCGGGCACGAGAGCGACGGCAAGGCCGTCTGCTGCGCCGCCTGC
AAGGATCCCGACATGGTGAATGTGAAGAGCACGGTGTGCGAGTGCGGCGC
CGCTCAGCCGGGATTCGGTTTCGAGAGCGACCCGAGGCCGACGCGGTGCG
TCCGATGTCAACTTCCGGGGATGCTCGACATCAGGAACAGGCGGTGCCAC
TGCGGCTCGGCGGTGCCGAACTTCGGCCACGACGGCGCCCCCCGCGCCAC
TCACTGCGCGCGATGCAAGGAGGACGGCATGATCGACGTCAACAATCGGA
GGTGCGAGCACGGGGGGTTCCTGAAG
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Coding sequence (CDS) from alignment at Contig_41:929682..931007+

>mRNA_4521 ID=mRNA_4521|Name=jgi.p|Trimin1|166035|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1254bp|location=Sequence derived from alignment at Contig_41:929682..931007+ (Tribonema minus UTEX_B_3156 )
ATGAAGTGGTGCGACGACCACAGGAGCTACGCCAAGTGCAGGCGCGAGGG
CTGCGACAAGCAGCCTTCTTTCAACGTGCGGGGCGCCGGCGCCCAGTGGT
GCTCCGAACACAAGAGTCCCGGCATGATCGACATCACCAGCGCCAGGTGC
AAGTGCGGCAGAGCGGGGCCCTCGCTGGGGCAGCCGGGAGACCGGAAGCC
GACCTGCTGCGCGAAGTGCAGGGAACCGGGCATGGTCAGTCTCAGGAAGG
TCCACCCGAAGTGCAGGAGCGAGGGCTGCGAGAAGCGTCCGACGTTCAAC
GTGCCGGGTGCGGGCGCCCAGTGGTGCGCCGCCCACAAGGGCCCGGAGAT
GATCGACTGCGTGAGCGCGAGGTGCAAGTGCGGCAGTCTAGTGCCGCGGT
ACGGCTTCGAGGGAGACCGGCGGCCCACCAGCTGCCTGCGCTGCAAGCAG
CCAGACATGGTCGACCTCACGACCAAGCGCTGCGATTGCGGCAGAGCGCT
GCCGACGTTCGCCTTCGCCGGAGACCGGGCGTCGCGCTGCGCGAAGTGCA
GGGAGCCCGGAATGGTCGACGTCAGGAGCAAGAAGTGCAGGTGCGGCAGA
GCGTGCCCGACGTTCGGACTCGAGGGCCAGCGGCCGCAGTGCTGCGCGCA
ATGCAGAGAGCCGGGCATGGTCGACGTCAAGGGCAGGCGGTGCGCGTGCG
GCAAGACGCAACCGAATTTCGGACTCCCCGGCGACGACCGCGCGTCCTGC
TGCGCCTCGTGCAAGAGGGACGGCATGGTAGACATCAGGAGCAGGCGCTG
CGTCTGCGGCAAGTCTCAGCCGTCGTACGGCTTCGAGGGAGACCCACGCG
CCACGTGCTGCGCGAAATGCAGGAAGTCCGGCATGGTCGACGTCGTCAAC
GAGAGGTGCCGCTGCGGCCGCGCCCGCCCCAACTTCGGGCACGAGAGCGA
CGGCAAGGCCGTCTGCTGCGCCGCCTGCAAGGATCCCGACATGGTGAATG
TGAAGAGCACGGTGTGCGAGTGCGGCGCCGCTCAGCCGGGATTCGGTTTC
GAGAGCGACCCGAGGCCGACGCGGTGCGTCCGATGTCAACTTCCGGGGAT
GCTCGACATCAGGAACAGGCGGTGCCACTGCGGCTCGGCGGTGCCGAACT
TCGGCCACGACGGCGCCCCCCGCGCCACTCACTGCGCGCGATGCAAGGAG
GACGGCATGATCGACGTCAACAATCGGAGGTGCGAGCACGGGGGGTTCCT
GAAG
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