mRNA_4516 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|165937
Unique NamemRNA_4516
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|165937 vs. uniprot
Match: A0A835YTA6_9STRA (Armadillo-type protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTA6_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.740e-14
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 MRAPGASAEVVLQSLRAVANLSSNTAENQTALGVAGACQAVVEAM 135
            MRAPGASAEVVLQSLRAVANLSSNTAENQTALGVAGACQAVVEAM
Sbjct:    1 MRAPGASAEVVLQSLRAVANLSSNTAENQTALGVAGACQAVVEAM 45
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|165937 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YTA6_9STRA1.740e-14100.00Armadillo-type protein (Fragment) n=1 Tax=Tribonem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_41contigContig_41:914744..915541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|165937|e_gw1.41.87.1
Hectar predicted targeting categoryother localisation
TranscriptId166259
TrackFilteredModels1
ProteinId165937
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165937gene_4516Tribonema minus UTEX_B_3156 geneContig_41 914744..915541 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4516_1exon_4516_1Tribonema minus UTEX_B_3156 exonContig_41 914744..915541 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4516CDS_4516Tribonema minus UTEX_B_3156 CDSContig_41 914744..915541 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165937Trimin1|165937|e_gw1.41.87.1Tribonema minus UTEX_B_3156 polypeptideContig_41 914744..915541 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4516 ID=mRNA_4516|Name=jgi.p|Trimin1|165937|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=798bp|location=Sequence derived from alignment at Contig_41:914744..915541+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGCGCCCGGGGCCAGCGCAGAGGTGGTCCTGCAGTCATTGCGGGC
TGTGGCGAACCTCAGTTCTAATACCGCCGAAAACCAAACGGCGCTCGGAG
TCGCCGGGGCGTGTCAGGCGGTGGTGGAGGCCATGCGCGCGCCCGGGGCA
AGCGCGGAGGTGGTCCTGCAGGCGTTGCGGGCGGTGGTGAACCTCAGTGC
TAATAACGCCGACAACAAAACGGCGCTCGGAGAGGCCGGGGCGTGTCAGG
CGGTGGTGGAGGCCATGCGCGCGCCCGGGGCAAGCGCGGAGGTGGTCCTG
CAGGCGTTGCGGGCGGTGGTGAACCTCAGTGCTAATAACGCCGACAACAA
AACGGCGCTCGGAGTAGCCGGGGCGTGTCAGACGGTGGTGGACGCCATGC
GCGCGCCCCGGGCAAGCGCGGAGGTGGTCCTGCAGGCGTTGTGGGCTGTG
GCGAACGTCAGTTCTAGTACCGCCGAAAACCAAACGGCGCTCGGAGTGGC
CGGGGCGTGTCAGGCGGTGGTGGACGCCATGCGCGCGCCCGGGGCCAGCG
CAGAGGTGGTCCTGCAGTCATTGCGGGCTGTGGCGAACCTCAGTTCTAAT
ACCGCCGAAAACCAAACGGCGCTCGGAGTCGCCGGGGCGTGTCAGGCGGT
GGTGGAGGCCATGCGCGCGCCCGGGGCAAGCGCGGAGGTGGTCCTGCAGG
CGTTGCGGGCGGTGGTGAACCTCAGTGCTAATAACGCCGACAACAAAACG
GCGCTCGGAGTAGCCGGGGCGTGTCAGACGGTGGTGGACGCCATGCGC
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protein sequence of jgi.p|Trimin1|165937

>Trimin1|165937|e_gw1.41.87.1 ID=Trimin1|165937|e_gw1.41.87.1|Name=jgi.p|Trimin1|165937|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=266bp
MRAPGASAEVVLQSLRAVANLSSNTAENQTALGVAGACQAVVEAMRAPGA
SAEVVLQALRAVVNLSANNADNKTALGEAGACQAVVEAMRAPGASAEVVL
QALRAVVNLSANNADNKTALGVAGACQTVVDAMRAPRASAEVVLQALWAV
ANVSSSTAENQTALGVAGACQAVVDAMRAPGASAEVVLQSLRAVANLSSN
TAENQTALGVAGACQAVVEAMRAPGASAEVVLQALRAVVNLSANNADNKT
ALGVAGACQTVVDAMR
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mRNA from alignment at Contig_41:914744..915541+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4516 ID=mRNA_4516|Name=jgi.p|Trimin1|165937|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=798bp|location=Sequence derived from alignment at Contig_41:914744..915541+ (Tribonema minus UTEX_B_3156 )
ATGCGCGCGCCCGGGGCCAGCGCAGAGGTGGTCCTGCAGTCATTGCGGGC
TGTGGCGAACCTCAGTTCTAATACCGCCGAAAACCAAACGGCGCTCGGAG
TCGCCGGGGCGTGTCAGGCGGTGGTGGAGGCCATGCGCGCGCCCGGGGCA
AGCGCGGAGGTGGTCCTGCAGGCGTTGCGGGCGGTGGTGAACCTCAGTGC
TAATAACGCCGACAACAAAACGGCGCTCGGAGAGGCCGGGGCGTGTCAGG
CGGTGGTGGAGGCCATGCGCGCGCCCGGGGCAAGCGCGGAGGTGGTCCTG
CAGGCGTTGCGGGCGGTGGTGAACCTCAGTGCTAATAACGCCGACAACAA
AACGGCGCTCGGAGTAGCCGGGGCGTGTCAGACGGTGGTGGACGCCATGC
GCGCGCCCCGGGCAAGCGCGGAGGTGGTCCTGCAGGCGTTGTGGGCTGTG
GCGAACGTCAGTTCTAGTACCGCCGAAAACCAAACGGCGCTCGGAGTGGC
CGGGGCGTGTCAGGCGGTGGTGGACGCCATGCGCGCGCCCGGGGCCAGCG
CAGAGGTGGTCCTGCAGTCATTGCGGGCTGTGGCGAACCTCAGTTCTAAT
ACCGCCGAAAACCAAACGGCGCTCGGAGTCGCCGGGGCGTGTCAGGCGGT
GGTGGAGGCCATGCGCGCGCCCGGGGCAAGCGCGGAGGTGGTCCTGCAGG
CGTTGCGGGCGGTGGTGAACCTCAGTGCTAATAACGCCGACAACAAAACG
GCGCTCGGAGTAGCCGGGGCGTGTCAGACGGTGGTGGACGCCATGCGC
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Coding sequence (CDS) from alignment at Contig_41:914744..915541+

>mRNA_4516 ID=mRNA_4516|Name=jgi.p|Trimin1|165937|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=798bp|location=Sequence derived from alignment at Contig_41:914744..915541+ (Tribonema minus UTEX_B_3156 )
ATGCGCGCGCCCGGGGCCAGCGCAGAGGTGGTCCTGCAGTCATTGCGGGC
TGTGGCGAACCTCAGTTCTAATACCGCCGAAAACCAAACGGCGCTCGGAG
TCGCCGGGGCGTGTCAGGCGGTGGTGGAGGCCATGCGCGCGCCCGGGGCA
AGCGCGGAGGTGGTCCTGCAGGCGTTGCGGGCGGTGGTGAACCTCAGTGC
TAATAACGCCGACAACAAAACGGCGCTCGGAGAGGCCGGGGCGTGTCAGG
CGGTGGTGGAGGCCATGCGCGCGCCCGGGGCAAGCGCGGAGGTGGTCCTG
CAGGCGTTGCGGGCGGTGGTGAACCTCAGTGCTAATAACGCCGACAACAA
AACGGCGCTCGGAGTAGCCGGGGCGTGTCAGACGGTGGTGGACGCCATGC
GCGCGCCCCGGGCAAGCGCGGAGGTGGTCCTGCAGGCGTTGTGGGCTGTG
GCGAACGTCAGTTCTAGTACCGCCGAAAACCAAACGGCGCTCGGAGTGGC
CGGGGCGTGTCAGGCGGTGGTGGACGCCATGCGCGCGCCCGGGGCCAGCG
CAGAGGTGGTCCTGCAGTCATTGCGGGCTGTGGCGAACCTCAGTTCTAAT
ACCGCCGAAAACCAAACGGCGCTCGGAGTCGCCGGGGCGTGTCAGGCGGT
GGTGGAGGCCATGCGCGCGCCCGGGGCAAGCGCGGAGGTGGTCCTGCAGG
CGTTGCGGGCGGTGGTGAACCTCAGTGCTAATAACGCCGACAACAAAACG
GCGCTCGGAGTAGCCGGGGCGTGTCAGACGGTGGTGGACGCCATGCGC
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