mRNA_4405 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349303
Unique NamemRNA_4405
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|349303 vs. uniprot
Match: A0A835YUH2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUH2_9STRA)

HSP 1 Score: 811 bits (2095), Expect = 5.500e-292
Identity = 518/518 (100.00%), Postives = 518/518 (100.00%), Query Frame = 1 
Query:    1 MESKAPAAAEECITVDGRSAALLIDPARPAAHAAQRMSSVILLSDSADTHCSSSGVGGGSGGHTRHLADALVQAGFIVLVCDVLPPGAPTAASHEPLNSKHLSSAVTAVLTTANYMRNTLLLARVGVLGFGGXXXXXXXXXAGEDAALDAVVAISPARSLEPPLGFTCTPTLYLAPASDALDERQSPSCSGXXXXXXXXXXXXXXXXXXXTTRTIAVPVATPKQLLSDARALEEVLAWLHVHLHPNGGAWEVARIAAAAPQQADWWVPAASGGAGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXXXEGMQFRSVGLQRWEAARARWRVRRVPRPRAPSPPPFEQLVEGLAGMQRTFELPGPIALPDVIDVLNEVWEQRRQSTLGXXXXXXXXXXXXXWQRQLLPSAPEGPRRGSASEQRPPQHHNVRELTCGRDRKCGTAAAQMAEHGQKMRGPVFEDQNILHVAERARALRCCRCCASSCAGDRLHSALRKGACDGACVR 1554
            MESKAPAAAEECITVDGRSAALLIDPARPAAHAAQRMSSVILLSDSADTHCSSSGVGGGSGGHTRHLADALVQAGFIVLVCDVLPPGAPTAASHEPLNSKHLSSAVTAVLTTANYMRNTLLLARVGVLGFGGXXXXXXXXXAGEDAALDAVVAISPARSLEPPLGFTCTPTLYLAPASDALDERQSPSCSGXXXXXXXXXXXXXXXXXXXTTRTIAVPVATPKQLLSDARALEEVLAWLHVHLHPNGGAWEVARIAAAAPQQADWWVPAASGGAGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXXXEGMQFRSVGLQRWEAARARWRVRRVPRPRAPSPPPFEQLVEGLAGMQRTFELPGPIALPDVIDVLNEVWEQRRQSTLGXXXXXXXXXXXXXWQRQLLPSAPEGPRRGSASEQRPPQHHNVRELTCGRDRKCGTAAAQMAEHGQKMRGPVFEDQNILHVAERARALRCCRCCASSCAGDRLHSALRKGACDGACVR
Sbjct:    1 MESKAPAAAEECITVDGRSAALLIDPARPAAHAAQRMSSVILLSDSADTHCSSSGVGGGSGGHTRHLADALVQAGFIVLVCDVLPPGAPTAASHEPLNSKHLSSAVTAVLTTANYMRNTLLLARVGVLGFGGXXXXXXXXXAGEDAALDAVVAISPARSLEPPLGFTCTPTLYLAPASDALDERQSPSCSGXXXXXXXXXXXXXXXXXXXTTRTIAVPVATPKQLLSDARALEEVLAWLHVHLHPNGGAWEVARIAAAAPQQADWWVPAASGGAGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXXXEGMQFRSVGLQRWEAARARWRVRRVPRPRAPSPPPFEQLVEGLAGMQRTFELPGPIALPDVIDVLNEVWEQRRQSTLGXXXXXXXXXXXXXWQRQLLPSAPEGPRRGSASEQRPPQHHNVRELTCGRDRKCGTAAAQMAEHGQKMRGPVFEDQNILHVAERARALRCCRCCASSCAGDRLHSALRKGACDGACVR 518
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BLAST of jgi.p|Trimin1|349303 vs. uniprot
Match: A0A7S2H7R4_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H7R4_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 7.000e-10
Identity = 32/72 (44.44%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:  970 EGMQFRSVGLQRWEAARARWRVRRVPRPRAPSPPP--FEQLVEGLAGMQRTFELPGPIALPDVIDVLNEVWE 1179
            +G +F + GL+ WEAAR +W    V + R P PPP  ++++V GL  + RT+ELPG + LPD++DV  ++WE
Sbjct:  122 DGAEFHNCGLETWEAARKKWTTGTV-KERPPHPPPVRYDEVVRGLTQVVRTYELPGRMTLPDIVDVFVDIWE 192
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BLAST of jgi.p|Trimin1|349303 vs. uniprot
Match: A0A7S2QZV9_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2QZV9_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.990e-9
Identity = 31/68 (45.59%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:  982 FRSVGLQRWEAARARWRVRRVPRPRAPSPPP--FEQLVEGLAGMQRTFELPGPIALPDVIDVLNEVWE 1179
            F++VGL  W+ AR  WRV  V   R P PPP  ++++V GL  +QRT+ELPG + LPD+I +  ++W+
Sbjct:   74 FQNVGLIHWKLARQAWRVCTV-ETRPPHPPPVRYDEVVRGLCQVQRTYELPGAMTLPDIISIFGDIWD 140
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BLAST of jgi.p|Trimin1|349303 vs. uniprot
Match: A0A7S2VZ09_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VZ09_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.000e-8
Identity = 31/68 (45.59%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:  982 FRSVGLQRWEAARARWRVRRVPRPRAPSPPP--FEQLVEGLAGMQRTFELPGPIALPDVIDVLNEVWE 1179
            F++VGL  W+ AR  WRV  V   R P PPP  ++++V GL  +QRT+ELPG + LPD+I +  ++W+
Sbjct:  106 FQNVGLIHWKLARQAWRVCTV-ETRPPHPPPVRYDEVVRGLCQVQRTYELPGAMTLPDIISIFGDIWD 172
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BLAST of jgi.p|Trimin1|349303 vs. uniprot
Match: A0A024ULN5_9STRA (DLH domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024ULN5_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 7.570e-8
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:  982 FRSVGLQRWEAARARWRVRRVPRPRAPSPPPFEQLVEGLAGMQRTFELPGPIALPDVIDVLNEVWE 1179
            F +VGL RW+A RA W     PRP  P P   E L+EGL  M+RT++LP P+AL D++ +  ++W+
Sbjct:  261 FYNVGLGRWQAQRASWLTVTRPRPPKPEPVALELLLEGLTSMKRTYDLPHPMALADLVGIYIDIWD 326
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BLAST of jgi.p|Trimin1|349303 vs. uniprot
Match: A0A6G0X5T3_9STRA (DLH domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X5T3_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 9.450e-8
Identity = 29/66 (43.94%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:  982 FRSVGLQRWEAARARWRVRRVPRPRAPSPPPFEQLVEGLAGMQRTFELPGPIALPDVIDVLNEVWE 1179
            F +VGL RW+A R  W    +PRP    P P E + EGL+ M+RTFELP P+ L D++++  ++W+
Sbjct:  252 FFNVGLSRWQAQRLEWTTSVLPRPPKRPPVPSESIFEGLSSMKRTFELPQPMNLGDIVELYVDIWD 317
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BLAST of jgi.p|Trimin1|349303 vs. uniprot
Match: A0A7S1G7I8_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G7I8_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.520e-7
Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:  982 FRSVGLQRWEAARARWRVRRVPRPRAPSPPP--FEQLVEGLAGMQRTFELPGPIALPDVIDVLNEVW 1176
            F + GLQ W   R  W  R     R PSPPP   E+++E LA +QR++ELPGP+ LPD+IDV  ++W
Sbjct: 1301 FCNAGLQSWRETREAWNERPAGFKRPPSPPPVPIEEVMEELAKLQRSYELPGPMRLPDIIDVYVDIW 1367
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BLAST of jgi.p|Trimin1|349303 vs. uniprot
Match: A0A485LBB4_9STRA (Aste57867_17418 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBB4_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.410e-6
Identity = 28/66 (42.42%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:  982 FRSVGLQRWEAARARWRVRRVPRPRAPSPPPFEQLVEGLAGMQRTFELPGPIALPDVIDVLNEVWE 1179
            F + GL  W+  RA W    +PRP    P P E + EGL+ M+RTFELP P+AL D++++  ++W+
Sbjct:  260 FYNAGLGLWQQQRAEWIKPVLPRPPKRPPVPSETIFEGLSSMKRTFELPQPMALADIVELYVDIWD 325
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BLAST of jgi.p|Trimin1|349303 vs. uniprot
Match: A0A1V9Y9Z3_9STRA (DLH domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y9Z3_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 3.170e-6
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:  982 FRSVGLQRWEAARARWRVRRVPRPRAPSPPPFEQLVEGLAGMQRTFELPGPIALPDVIDVLNEVWE 1179
            F +VGL  W+A RA+W    VPRP    P     ++EGLA M+RT+ELP P+ L DVI +  ++W+
Sbjct:  258 FYNVGLANWQANRAKWTTPVVPRPPRRPPVDGSLILEGLASMRRTYELPQPMNLADVIALYVDIWD 323
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BLAST of jgi.p|Trimin1|349303 vs. uniprot
Match: A0A067C378_SAPPC (DLH domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C378_SAPPC)

HSP 1 Score: 59.7 bits (143), Expect = 5.640e-6
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:  982 FRSVGLQRWEAARARWRVRRVPRPRAPSPPPFEQ--LVEGLAGMQRTFELPGPIALPDVIDVLNEVWE 1179
            F +VGL  W+A RA+W      RPR P  PP +   ++EGLA M+RTFELP P+ L DVI +  ++W+
Sbjct:  258 FYNVGLANWQANRAQWTT--PVRPRPPRRPPVDSSLILEGLASMRRTFELPQPMNLSDVIALYVDIWD 323
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BLAST of jgi.p|Trimin1|349303 vs. uniprot
Match: A0A836CFV0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFV0_9STRA)

HSP 1 Score: 779 bits (2011), Expect = 1.870e-277
Identity = 598/598 (100.00%), Postives = 598/598 (100.00%), Query Frame = 1 
Query:    1 MADNKFSIKHHQEGKRHQELVVQSERDKREGKAKTEHDEKMLKKELRAIEAAAAAAQAADMEFFGKPPGAKEGEEGPNPELADEGLYQVGGSWYFDGKRHEDKLVKHAHCQLYIEGGIPGAPRRRAVKPEAVKREAAEAEPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRVKEEAREAAEHDYEGAIPXXXXXLLEATDVKXXXXXLPELEVAHGGDVXXXXXXXXLETASDEMIDVKXXXXXXXXXXXXXXXXXXXLXXXXPPLLPGMQEAVGGEDGLAPXXXXPVGDEVDVXXXXXXXXXXXXXXXPPLVDAGDAAEPEETDDGGVEEWIDALILEVALVAVPNTDIRLRRHKVAYFAPGAEHETVVEDIPSDRLRIPAGEDAEWTAPDDAQLINVIIESDELKRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPPXXXXXXXDENTGIGRWQTVKVTTFSQEELDARQAKAEVAKSAKQKRRAXXXXRAERDMELDLAMEADDAMGSYDPLGTGRYKGFDLERGGHDAEEVSAEQKAAIAAALEAEKGAAAPVAFKXXXXXXXXXXXXXRTDDE 1794
            MADNKFSIKHHQEGKRHQELVVQSERDKREGKAKTEHDEKMLKKELRAIEAAAAAAQAADMEFFGKPPGAKEGEEGPNPELADEGLYQVGGSWYFDGKRHEDKLVKHAHCQLYIEGGIPGAPRRRAVKPEAVKREAAEAEPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRVKEEAREAAEHDYEGAIPXXXXXLLEATDVKXXXXXLPELEVAHGGDVXXXXXXXXLETASDEMIDVKXXXXXXXXXXXXXXXXXXXLXXXXPPLLPGMQEAVGGEDGLAPXXXXPVGDEVDVXXXXXXXXXXXXXXXPPLVDAGDAAEPEETDDGGVEEWIDALILEVALVAVPNTDIRLRRHKVAYFAPGAEHETVVEDIPSDRLRIPAGEDAEWTAPDDAQLINVIIESDELKRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPPXXXXXXXDENTGIGRWQTVKVTTFSQEELDARQAKAEVAKSAKQKRRAXXXXRAERDMELDLAMEADDAMGSYDPLGTGRYKGFDLERGGHDAEEVSAEQKAAIAAALEAEKGAAAPVAFKXXXXXXXXXXXXXRTDDE
Sbjct:    1 MADNKFSIKHHQEGKRHQELVVQSERDKREGKAKTEHDEKMLKKELRAIEAAAAAAQAADMEFFGKPPGAKEGEEGPNPELADEGLYQVGGSWYFDGKRHEDKLVKHAHCQLYIEGGIPGAPRRRAVKPEAVKREAAEAEPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRVKEEAREAAEHDYEGAIPXXXXXLLEATDVKXXXXXLPELEVAHGGDVXXXXXXXXLETASDEMIDVKXXXXXXXXXXXXXXXXXXXLXXXXPPLLPGMQEAVGGEDGLAPXXXXPVGDEVDVXXXXXXXXXXXXXXXPPLVDAGDAAEPEETDDGGVEEWIDALILEVALVAVPNTDIRLRRHKVAYFAPGAEHETVVEDIPSDRLRIPAGEDAEWTAPDDAQLINVIIESDELKRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPPXXXXXXXDENTGIGRWQTVKVTTFSQEELDARQAKAEVAKSAKQKRRAXXXXRAERDMELDLAMEADDAMGSYDPLGTGRYKGFDLERGGHDAEEVSAEQKAAIAAALEAEKGAAAPVAFKXXXXXXXXXXXXXRTDDE 598
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BLAST of jgi.p|Trimin1|349303 vs. uniprot
Match: A0A6H5JFI0_9PHAE (Matrin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFI0_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 6.650e-10
Identity = 75/222 (33.78%), Postives = 94/222 (42.34%), Query Frame = 1 
Query: 1009 WIDALILEVALVAVPNTDIRL------------RRHKVAYFAPGAEHETVVEDIPSDRLRIPAGEDAEWTAPDDAQLINVIIESDELKRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPPXXXXXXXDENTGIGRWQTVKVTTFS-QEELDARQAKAEVAKSAKQKRRAXXXXRAERDMELDLAMEADDAMGSYDPLGTGRYKGFDL 1635
            W+DA++L +A    P  D               RR  +AYF  GAE ETV+  + +  +R+PAGE   W AP +                                                           PPXXXX   DENTG+G WQTV V       E +AR+ K EV    K     XXXX   R+  L  AM+ADDAMGSYDP GTG+YKGF++
Sbjct:  238 WVDAVVLALADSEQPPHDATAAGDASAGIMATTRRLDLAYFEAGAEKETVLRGVEAAAVRLPAGEGGAWPAPREM----------------------------------------------------------PPXXXX---DENTGLGGWQTVSVRMVDVAAEAEARRVKKEV----KXXXXXXXXXXXXREKMLVEAMDADDAMGSYDPWGTGKYKGFEI 394
[Close]
BLAST of jgi.p|Trimin1|349303 vs. uniprot
Match: K3WLJ6_GLOUD (Matrin-type domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLJ6_GLOUD)

HSP 1 Score: 61.2 bits (147), Expect = 2.440e-6
Identity = 45/148 (30.41%), Postives = 68/148 (45.95%), Query Frame = 1 
Query:    1 MADNKFSIKHHQEGKRHQELVVQSERDKREGKAKTEHDEKMLKKELRAIEAAAAAAQAADMEFFGKPPGAKEGEEGPNPELA---------------------------------DEGLYQVGGSWYFDGKRHEDKLVKHAHCQLYIE 345
            M  +K +IKHH++GK+H+ELV ++ + KR+ K++  H E+ L+ +LR IE AA A  A DM   G  P                                               D G+Y + G  + +GKRHEDKL   + CQ+++E
Sbjct:   14 MQGDKTAIKHHEQGKKHKELVEETLKQKRKAKSEAYHSERDLQDQLREIEEAAQAKYAQDMARSGVLPXXXXXXXXXXXXXXXXXXXARXXXXXXXXXXXXXXXXXXXXXXXKEDDHGIYAIRGEVFLEGKRHEDKLETGSACQIWVE 161
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349303 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A835YUH2_9STRA5.500e-292100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2H7R4_9STRA7.000e-1044.44Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2QZV9_9STRA4.990e-945.59Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2VZ09_9STRA1.000e-845.59Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A024ULN5_9STRA7.570e-845.45DLH domain-containing protein n=2 Tax=Aphanomyces ... [more]
A0A6G0X5T3_9STRA9.450e-843.94DLH domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A7S1G7I8_9STRA2.520e-747.76Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A485LBB4_9STRA2.410e-642.42Aste57867_17418 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9Y9Z3_9STRA3.170e-645.45DLH domain-containing protein n=1 Tax=Achlya hypog... [more]
A0A067C378_SAPPC5.640e-647.06DLH domain-containing protein n=2 Tax=Saprolegnia ... [more]

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BLAST of jgi.p|Trimin1|349303 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CFV0_9STRA1.870e-277100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JFI0_9PHAE6.650e-1033.78Matrin-type domain-containing protein n=2 Tax=Ecto... [more]
K3WLJ6_GLOUD2.440e-630.41Matrin-type domain-containing protein n=1 Tax=Glob... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_41contigContig_41:169080..171404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349303|estExt_Genemark1.C_Ctg_410023
Max annot lvl2759|Eukaryota
EggNOG OGs2A884@1|root,2RYFX@2759|Eukaryota
Evalue1.04e-08
Seed ortholog157072.XP_008865165.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-15_001680.1
TranscriptId349625
TrackFilteredModels1
ProteinId349303
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349303gene_4405Tribonema minus UTEX_B_3156 geneContig_41 169080..171404 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349303Trimin1|349303|estExt_Genemark1.C_Ctg_410023Tribonema minus UTEX_B_3156 polypeptideContig_41 169268..171404 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4405_5exon_4405_5Tribonema minus UTEX_B_3156 exonContig_41 169080..169366 -
exon_4405_4exon_4405_4Tribonema minus UTEX_B_3156 exonContig_41 169473..169524 -
exon_4405_3exon_4405_3Tribonema minus UTEX_B_3156 exonContig_41 169675..169901 -
exon_4405_2exon_4405_2Tribonema minus UTEX_B_3156 exonContig_41 169984..171150 -
exon_4405_1exon_4405_1Tribonema minus UTEX_B_3156 exonContig_41 171393..171404 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_4405UTR3_4405Tribonema minus UTEX_B_3156 three_prime_UTRContig_41 169080..169267 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4405CDS_4405Tribonema minus UTEX_B_3156 CDSContig_41 171393..171404 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4405 ID=mRNA_4405|Name=jgi.p|Trimin1|349303|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1745bp|location=Sequence derived from alignment at Contig_41:169080..171404- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAGCAAGGCGCCTGCGGCCGCCGAGGAGTGCATCACCGTGGACGG
CCGCAGCGCCGCGCTGCTGATCGACCCAGCACGCCCCGCCGCGCACGCTG
CACAGCGCATGTCCAGCGTCATCCTGCTGAGCGATAGCGCTGACACACAC
TGCAGCAGCAGCGGAGTAGGCGGCGGCAGCGGCGGTCACACGCGGCACCT
GGCAGATGCCTTGGTGCAGGCAGGGTTCATCGTGCTCGTGTGCGACGTGC
TGCCGCCAGGCGCGCCCACCGCAGCCTCACACGAACCCCTGAACAGCAAG
CACCTGTCATCCGCCGTGACGGCCGTCCTCACCACCGCCAACTACATGAG
GAACACGCTGTTGCTGGCGCGGGTGGGGGTTCTGGGGTTCGGCGGCGGCG
CGGCGGCGGCAGCGGCGGCGGGCGCAGGCGAGGACGCGGCTTTGGACGCT
GTCGTCGCCATCTCTCCTGCGCGCTCATTAGAACCTCCCTTAGGATTCAC
GTGCACGCCTACGCTGTACCTGGCGCCTGCCTCCGACGCGCTTGACGAAC
GGCAATCGCCGAGCTGCAGCGGCGGCGGCGGCGGCGGCGCAGCAGCGGCA
GCAGCGCCGTCGTCGAGCCTCGCCGCCGCCACAACGCGCACGATCGCTGT
GCCAGTGGCCACTCCTAAGCAGCTGCTGAGCGACGCGCGCGCCCTCGAAG
AGGTGCTGGCGTGGTTGCACGTGCACCTTCACCCAAACGGCGGCGCGTGG
GAGGTCGCGCGCATCGCCGCCGCAGCGCCGCAGCAGGCGGACTGGTGGGT
GCCCGCCGCCAGCGGCGGCGCCGGCGTTGGCAGCAGCAATGGCAACGGAG
ACAGCTACAGCAGCAGCGGCGGCGGCAGCAATGGCGACGGCGGCGGCGGC
GGAGGCGGCGGTGGCGGCGGTGATGGCGGCGGCAGCGGCGGCGGCAGCAG
CGGGGCGGAGGGCGGATGCGAAGGGATGCAGTTTCGGAGCGTTGGGCTGC
AGCGGTGGGAGGCGGCGCGGGCGCGATGGCGCGTGCGGCGCGTGCCGCGG
CCGCGCGCACCGTCGCCGCCGCCGTTCGAGCAGCTGGTGGAGGGGCTCGC
GGGCATGCAGCGCACGTTTGAGCTGCCGGGTCCCATAGCGCTGCCGGATG
TGATCGACGTTTTAAACGAGGTGTGGGAGCAGCGGCGCCAGAGCACGCTC
GGCGGCGCCGGCGGCGGCGAAGTGCTGCTGCAGCAGCGGCGCTGGCAGCG
GCAGCTGCTGCCATCTGCACCAGAGGGGCCGCGCCGCGGAAGCGCGTCAG
AGCAGCGGCCGCCGCAGCATCACAACGTCAGAGAGCTGACGTGCGGGCGT
GACCGCAAGTGCGGCACGGCCGCCGCACAGATGGCCGAACACGGCCAGAA
GATGCGCGGACCGGTCTTCGAGGACCAGAACATTCTGCACGTCGCAGAAC
GCGCAAGAGCGCTGCGCTGCTGCCGCTGCTGCGCGTCGAGCTGCGCTGGC
GACCGACTGCACAGCGCGCTGCGCAAGGGTGCATGCGACGGCGCATGCGT
ACGATGACAGCTTTGCTCAGAACGTGCGCATCGCGCGCGCTGTGCGCTCG
CGCATGCTTGACAGCCGCAGCGCGCGCGCACAGAGCGCATTGTAGTCATC
AGGTGTACCGGTAAAGCCTTGAAGTTTTCTGCTGCACGCGGCGGTTGTAC
AGCCTTGCGCTCCTCTCCCTTTCAATACGTCCCCCCCGGTCAGCG
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protein sequence of jgi.p|Trimin1|349303

>Trimin1|349303|estExt_Genemark1.C_Ctg_410023 ID=Trimin1|349303|estExt_Genemark1.C_Ctg_410023|Name=jgi.p|Trimin1|349303|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=519bp
MESKAPAAAEECITVDGRSAALLIDPARPAAHAAQRMSSVILLSDSADTH
CSSSGVGGGSGGHTRHLADALVQAGFIVLVCDVLPPGAPTAASHEPLNSK
HLSSAVTAVLTTANYMRNTLLLARVGVLGFGGGAAAAAAAGAGEDAALDA
VVAISPARSLEPPLGFTCTPTLYLAPASDALDERQSPSCSGGGGGGAAAA
AAPSSSLAAATTRTIAVPVATPKQLLSDARALEEVLAWLHVHLHPNGGAW
EVARIAAAAPQQADWWVPAASGGAGVGSSNGNGDSYSSSGGGSNGDGGGG
GGGGGGGDGGGSGGGSSGAEGGCEGMQFRSVGLQRWEAARARWRVRRVPR
PRAPSPPPFEQLVEGLAGMQRTFELPGPIALPDVIDVLNEVWEQRRQSTL
GGAGGGEVLLQQRRWQRQLLPSAPEGPRRGSASEQRPPQHHNVRELTCGR
DRKCGTAAAQMAEHGQKMRGPVFEDQNILHVAERARALRCCRCCASSCAG
DRLHSALRKGACDGACVR*
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mRNA from alignment at Contig_41:169080..171404-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4405 ID=mRNA_4405|Name=jgi.p|Trimin1|349303|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2325bp|location=Sequence derived from alignment at Contig_41:169080..171404- (Tribonema minus UTEX_B_3156 )
ATGGAGAGCAAGGTGACGCTGCCAACTTGTCTGCATGGTGTAGAAGTTAG
CGCGTAAGACATGTTGTGGGTTGTAGTAGGTCGTGTCGGAGCTATAAGCA
CTCCAGAACATGCCACTGTAATGACCAATAACCGCCTCGTCTGCGTCGTC
TGCGTCGTCTGCGACGTGCAGGGGCAAGCAATGCTGTGCCCGCTATTGCT
GTGCGCTAAGTCATGGCGCTGCCTTTCCTCGCTCATTTCTTGTCTGATTC
ACAGGCGCCTGCGGCCGCCGAGGAGTGCATCACCGTGGACGGCCGCAGCG
CCGCGCTGCTGATCGACCCAGCACGCCCCGCCGCGCACGCTGCACAGCGC
ATGTCCAGCGTCATCCTGCTGAGCGATAGCGCTGACACACACTGCAGCAG
CAGCGGAGTAGGCGGCGGCAGCGGCGGTCACACGCGGCACCTGGCAGATG
CCTTGGTGCAGGCAGGGTTCATCGTGCTCGTGTGCGACGTGCTGCCGCCA
GGCGCGCCCACCGCAGCCTCACACGAACCCCTGAACAGCAAGCACCTGTC
ATCCGCCGTGACGGCCGTCCTCACCACCGCCAACTACATGAGGAACACGC
TGTTGCTGGCGCGGGTGGGGGTTCTGGGGTTCGGCGGCGGCGCGGCGGCG
GCAGCGGCGGCGGGCGCAGGCGAGGACGCGGCTTTGGACGCTGTCGTCGC
CATCTCTCCTGCGCGCTCATTAGAACCTCCCTTAGGATTCACGTGCACGC
CTACGCTGTACCTGGCGCCTGCCTCCGACGCGCTTGACGAACGGCAATCG
CCGAGCTGCAGCGGCGGCGGCGGCGGCGGCGCAGCAGCGGCAGCAGCGCC
GTCGTCGAGCCTCGCCGCCGCCACAACGCGCACGATCGCTGTGCCAGTGG
CCACTCCTAAGCAGCTGCTGAGCGACGCGCGCGCCCTCGAAGAGGTGCTG
GCGTGGTTGCACGTGCACCTTCACCCAAACGGCGGCGCGTGGGAGGTCGC
GCGCATCGCCGCCGCAGCGCCGCAGCAGGCGGACTGGTGGGTGCCCGCCG
CCAGCGGCGGCGCCGGCGTTGGCAGCAGCAATGGCAACGGAGACAGCTAC
AGCAGCAGCGGCGGCGGCAGCAATGGCGACGGCGGCGGCGGCGGAGGCGG
CGGTGGCGGCGGTGATGGCGGCGGCAGCGGCGGCGGCAGCAGCGGGGCGG
AGGGCGGATGCGAAGGGATGCAGTTTCGGAGCGTTGGGCTGCAGCGGTGG
GAGGCGGCGCGGGCGCGATGGCGCGTGCGGCGCGTGCCGCGGCCGCGCGC
ACCGTCGCCGCCGCCGTTCGAGCAGCTGGTGGAGGGGCTCGCGGGCATGC
AGCGCACGTTTGAGCTGCCGGGTCCCATAGCGCTGCCGGATGTGATCGAC
GTTTTAAACGAGGTGTGGGAGGTGGAAGGCGGCTGCTAGCCCTAGTCCAC
AAGCCCTGCTTCTTAGCGGTGGCGTCCCGCTCAATGCGCCACAATGGGCG
CAGCAGCGGCGCCAGAGCACGCTCGGCGGCGCCGGCGGCGGCGAAGTGCT
GCTGCAGCAGCGGCGCTGGCAGCGGCAGCTGCTGCCATCTGCACCAGAGG
GGCCGCGCCGCGGAAGCGCGTCAGAGCAGCGGCCGCCGCAGCATCACAAC
GTCAGAGAGCTGACGTGCGGGCGTGACCGCAAGTGCGGCACGGCCGCCGC
ACAGATGGCCGAACACGGCCAGAAGATGCGGTGCGCCTGCTGGCTGGTGC
TGGTGCTGGGCGCTGTCGCACGCCATTGCGGTGGGGGTCATTGTATCACA
AGTGTTGTTGTGGCACTACACAGTTTGCTGCGGCGGCCGGCTGCCGAGGA
GAGAGCGCGCGCCGCACGCGCGCCCCTCAGCGGACCGGTCTTCGAGGACC
AGAACATTCTGCACGTCGCAGAACGCGCAAGAGTGCGTGCTGCGGACGCA
ATCACCACACCGCAGCCAGAAAGAGCCACACAGGTGTGGTTTTTCGGGCG
GAGGCTGCGCAGCAGTGCGCGCCGCTGTCGCTCGCGAGGCGCTGCGCTGC
TGCCGCTGCTGCGCGTCGAGCTGCGCTGGCGACCGACTGCACAGCGCGCT
GCGCAAGGGTGCATGCGACGGCGCATGCGTACGATGACAGCTTTGCTCAG
AACGTGCGCATCGCGCGCGCTGTGCGCTCGCGCATGCTTGACAGCCGCAG
CGCGCGCGCACAGAGCGCATTGTAGTCATCAGGTGTACCGGTAAAGCCTT
GAAGTTTTCTGCTGCACGCGGCGGTTGTACAGCCTTGCGCTCCTCTCCCT
TTCAATACGTCCCCCCCGGTCAGCG
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Coding sequence (CDS) from alignment at Contig_41:169080..171404-

>mRNA_4405 ID=mRNA_4405|Name=jgi.p|Trimin1|349303|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1557bp|location=Sequence derived from alignment at Contig_41:169080..171404- (Tribonema minus UTEX_B_3156 )
ATGGAGAGCAAGGCGCCTGCGGCCGCCGAGGAGTGCATCACCGTGGACGG
CCGCAGCGCCGCGCTGCTGATCGACCCAGCACGCCCCGCCGCGCACGCTG
CACAGCGCATGTCCAGCGTCATCCTGCTGAGCGATAGCGCTGACACACAC
TGCAGCAGCAGCGGAGTAGGCGGCGGCAGCGGCGGTCACACGCGGCACCT
GGCAGATGCCTTGGTGCAGGCAGGGTTCATCGTGCTCGTGTGCGACGTGC
TGCCGCCAGGCGCGCCCACCGCAGCCTCACACGAACCCCTGAACAGCAAG
CACCTGTCATCCGCCGTGACGGCCGTCCTCACCACCGCCAACTACATGAG
GAACACGCTGTTGCTGGCGCGGGTGGGGGTTCTGGGGTTCGGCGGCGGCG
CGGCGGCGGCAGCGGCGGCGGGCGCAGGCGAGGACGCGGCTTTGGACGCT
GTCGTCGCCATCTCTCCTGCGCGCTCATTAGAACCTCCCTTAGGATTCAC
GTGCACGCCTACGCTGTACCTGGCGCCTGCCTCCGACGCGCTTGACGAAC
GGCAATCGCCGAGCTGCAGCGGCGGCGGCGGCGGCGGCGCAGCAGCGGCA
GCAGCGCCGTCGTCGAGCCTCGCCGCCGCCACAACGCGCACGATCGCTGT
GCCAGTGGCCACTCCTAAGCAGCTGCTGAGCGACGCGCGCGCCCTCGAAG
AGGTGCTGGCGTGGTTGCACGTGCACCTTCACCCAAACGGCGGCGCGTGG
GAGGTCGCGCGCATCGCCGCCGCAGCGCCGCAGCAGGCGGACTGGTGGGT
GCCCGCCGCCAGCGGCGGCGCCGGCGTTGGCAGCAGCAATGGCAACGGAG
ACAGCTACAGCAGCAGCGGCGGCGGCAGCAATGGCGACGGCGGCGGCGGC
GGAGGCGGCGGTGGCGGCGGTGATGGCGGCGGCAGCGGCGGCGGCAGCAG
CGGGGCGGAGGGCGGATGCGAAGGGATGCAGTTTCGGAGCGTTGGGCTGC
AGCGGTGGGAGGCGGCGCGGGCGCGATGGCGCGTGCGGCGCGTGCCGCGG
CCGCGCGCACCGTCGCCGCCGCCGTTCGAGCAGCTGGTGGAGGGGCTCGC
GGGCATGCAGCGCACGTTTGAGCTGCCGGGTCCCATAGCGCTGCCGGATG
TGATCGACGTTTTAAACGAGGTGTGGGAGCAGCGGCGCCAGAGCACGCTC
GGCGGCGCCGGCGGCGGCGAAGTGCTGCTGCAGCAGCGGCGCTGGCAGCG
GCAGCTGCTGCCATCTGCACCAGAGGGGCCGCGCCGCGGAAGCGCGTCAG
AGCAGCGGCCGCCGCAGCATCACAACGTCAGAGAGCTGACGTGCGGGCGT
GACCGCAAGTGCGGCACGGCCGCCGCACAGATGGCCGAACACGGCCAGAA
GATGCGCGGACCGGTCTTCGAGGACCAGAACATTCTGCACGTCGCAGAAC
GCGCAAGAGCGCTGCGCTGCTGCCGCTGCTGCGCGTCGAGCTGCGCTGGC
GACCGACTGCACAGCGCGCTGCGCAAGGGTGCATGCGACGGCGCATGCGT
ACGATGA
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