mRNA_4350 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|143910
Unique NamemRNA_4350
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|143910 vs. uniprot
Match: A0A835ZE61_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE61_9STRA)

HSP 1 Score: 246 bits (629), Expect = 4.260e-83
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1 
Query:    1 MAAYNVCLYHMKGIGPYLAVWDIDEYLVLGDASLAADAVVTLVERVENAQCPDWCFLTFPSQYVYARDLSVDRTGEVRLPSENICPDLQWAWEKSILRTKNVWVGGFHYGGAC 339
            MAAYNVCLYHMKGIGPYLAVWDIDEYLVLGDASLAADAVVTLVERVENAQCPDWCFLTFPSQYVYARDLSVDRTGEVRLPSENICPDLQWAWEKSILRTKNVWVGGFHYGGAC
Sbjct:    1 MAAYNVCLYHMKGIGPYLAVWDIDEYLVLGDASLAADAVVTLVERVENAQCPDWCFLTFPSQYVYARDLSVDRTGEVRLPSENICPDLQWAWEKSILRTKNVWVGGFHYGGAC 113
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BLAST of jgi.p|Trimin1|143910 vs. uniprot
Match: A0A482S3L0_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S3L0_9ARCH)

HSP 1 Score: 51.6 bits (122), Expect = 3.120e-5
Identity = 33/110 (30.00%), Postives = 52/110 (47.27%), Query Frame = 1 
Query:    7 AYNVCLYHMKGIGPYLAVWDIDEYLVLGDASLAADAVVTLVERVENAQCPDWCFLTFPSQYVYARDLSVDRTGEVRLPSENICPDLQWAWEKSILRTK----NVWVGGFH 324
            A N+CLY  KG+  YLAVWD+DE+LV          ++  V+R       ++C+L  PS   +  D        + LP E   P+L  A  K+   +     N+W+  ++
Sbjct:   77 AINMCLYFSKGLADYLAVWDVDEFLVPAHPEQTIQDILGSVDR-------EYCYLELPSSTYFRVD------DYINLPKET--PNLPSALIKNRYTSASVYYNLWITKYY 171
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|143910 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835ZE61_9STRA4.260e-83100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A482S3L0_9ARCH3.120e-530.00Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_10contigContig_10:1336597..1337688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|143910|gw1.10.140.1
Hectar predicted targeting categoryother localisation
TranscriptId144232
TrackFilteredModels1
ProteinId143910
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|143910gene_4350Tribonema minus UTEX_B_3156 geneContig_10 1336597..1337688 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4350_1exon_4350_1Tribonema minus UTEX_B_3156 exonContig_10 1336597..1336851 +
exon_4350_2exon_4350_2Tribonema minus UTEX_B_3156 exonContig_10 1337605..1337688 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4350CDS_4350Tribonema minus UTEX_B_3156 CDSContig_10 1336597..1336851 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|143910Trimin1|143910|gw1.10.140.1Tribonema minus UTEX_B_3156 polypeptideContig_10 1336597..1337688 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4350 ID=mRNA_4350|Name=jgi.p|Trimin1|143910|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=339bp|location=Sequence derived from alignment at Contig_10:1336597..1337688+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCGTACAACGTGTGCCTCTACCACATGAAGGGCATCGGCCCCTA
CTTGGCGGTGTGGGATATAGACGAGTACCTGGTGTTGGGCGATGCGTCGC
TGGCTGCGGACGCGGTCGTGACCCTCGTGGAGCGGGTGGAGAACGCGCAG
TGCCCGGACTGGTGCTTCCTGACGTTTCCGTCGCAGTACGTGTACGCACG
GGACCTGAGTGTCGACCGCACAGGTGAAGTGCGGCTTCCGAGCGAGAATA
TATGTCCGGACCTGCAGTGGGCCTGGGAGAAATCCATACTGCGCACCAAG
AATGTGTGGGTAGGGGGGTTTCACTACGGGGGCGCGTGC
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protein sequence of jgi.p|Trimin1|143910

>Trimin1|143910|gw1.10.140.1 ID=Trimin1|143910|gw1.10.140.1|Name=jgi.p|Trimin1|143910|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=113bp
MAAYNVCLYHMKGIGPYLAVWDIDEYLVLGDASLAADAVVTLVERVENAQ
CPDWCFLTFPSQYVYARDLSVDRTGEVRLPSENICPDLQWAWEKSILRTK
NVWVGGFHYGGAC
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mRNA from alignment at Contig_10:1336597..1337688+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4350 ID=mRNA_4350|Name=jgi.p|Trimin1|143910|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1092bp|location=Sequence derived from alignment at Contig_10:1336597..1337688+ (Tribonema minus UTEX_B_3156 )
ATGGCCGCGTACAACGTGTGCCTCTACCACATGAAGGGCATCGGCCCCTA
CTTGGCGGTGTGGGATATAGACGAGTACCTGGTGTTGGGCGATGCGTCGC
TGGCTGCGGACGCGGTCGTGACCCTCGTGGAGCGGGTGGAGAACGCGCAG
TGCCCGGACTGGTGCTTCCTGACGTTTCCGTCGCAGTACGTGTACGCACG
GGACCTGAGTGTCGACCGCACAGGTGAAGTGCGGCTTCCGAGCGAGAATA
TATGTGTAGAGTAGCTGTAGTGAAGGCTGCTGCAACTGCACCTACTGTTG
CGTATTCAATGGGCACTATTGTGGAAAGAGCTGCGCGGGTTTCAGCAGCG
CCATCGCCTGACGCAGGGCTTTCCACATGCAGTGACGTTTCCGTGCGCGG
CCTCGGCGCCAACTTCAAAGGCGAATCATTGCGCTACGCTACGCCTGTGC
GCCTCTTCTTGTCTGCCGCTGACGGTCGCTCGTAGCGCGTGCACCCGGGT
TTCGCGTGAACATTACAATAGCCCTGTGCGTGCACCCGCAAGCATACATC
GCCGGACAGATGCTCTGCGCATTCAGCACTCGTCGCAGCGCAAGCCTGGC
GCGGAGGCAAAGCTGGCACCATATGACGCACCGCGTGCGCTGTACACTCT
GACTCTGAGCTCGGCTGCACGCATTGACGCCGCTGCTGGTCTCTCTTTCG
AGCCGCGCTGTGGCGGCTTGTGGCGCGACGCTCACATCACTGCCGTTGCA
TTCAGAACACATGGGGGGACGTGCTAACTTTAGATCGACCGTGTCATTTG
TTTCTGTCGCCGCCACTGCCGACGCTCGTTGCGTCCAGTTGGCGTGCGTC
AATTGTGCCTCCCCTTCTGCAACTGTTACCCCCTAAGGCTTCGGCAGGAC
CCTCGACCTCACATGCCCCCCCCCCCCCCCCCCCCCCCACCCTCCCCCGC
AACTGCCACCCCCCCAGGGTACAACGGCGTCGACTTCACCGCCGCGCAGC
CGCCGCAGCCGGACCTGCAGTGGGCCTGGGAGAAATCCATACTGCGCACC
AAGAATGTGTGGGTAGGGGGGTTTCACTACGGGGGCGCGTGC
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Coding sequence (CDS) from alignment at Contig_10:1336597..1337688+

>mRNA_4350 ID=mRNA_4350|Name=jgi.p|Trimin1|143910|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=339bp|location=Sequence derived from alignment at Contig_10:1336597..1337688+ (Tribonema minus UTEX_B_3156 )
ATGGCCGCGTACAACGTGTGCCTCTACCACATGAAGGGCATCGGCCCCTA
CTTGGCGGTGTGGGATATAGACGAGTACCTGGTGTTGGGCGATGCGTCGC
TGGCTGCGGACGCGGTCGTGACCCTCGTGGAGCGGGTGGAGAACGCGCAG
TGCCCGGACTGGTGCTTCCTGACGTTTCCGTCGCAGTACGTGTACGCACG
GGACCTGAGTGTCGACCGCACAGGTGAAGTGCGGCTTCCGAGCGAGAATA
TATGTCCGGACCTGCAGTGGGCCTGGGAGAAATCCATACTGCGCACCAAG
AATGTGTGGGTAGGGGGGTTTCACTACGGGGGCGCGTGC
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