mRNA_4228 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|143585 vs. uniprot
Match: A0A835ZIA8_9STRA (JmjC domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIA8_9STRA) HSP 1 Score: 152 bits (383), Expect = 6.540e-47 Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 Query: 1 PRFQSPISPDELAGLSCADDVESNIVTGGKTPGNSDWAVRHGPFDEGTFEEEELGGSHWTLLVNEVNRYV 210 PRFQSPISPDELAGLSCADDVESNIVTGGKTPGNSDWAVRHGPFDEGTFEEEELGGSHWTLLVNEVNRYV Sbjct: 1 PRFQSPISPDELAGLSCADDVESNIVTGGKTPGNSDWAVRHGPFDEGTFEEEELGGSHWTLLVNEVNRYV 70
BLAST of jgi.p|Trimin1|143585 vs. uniprot
Match: A0A836CR86_9STRA (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CR86_9STRA) HSP 1 Score: 143 bits (361), Expect = 3.670e-39 Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 1 Query: 4 RFQSPISPDELAGLSCADDVESNIVTGGKTPGNSDWAVRHGPFDEGTFEEEELGGSHWTLLVNEVNRYV 210 FQSPISPDELAGLSCADDVES IVTGGKTPGNSDWAVRHGPFDEGTFEEEELGGSHWTLLVNEVNR+V Sbjct: 99 EFQSPISPDELAGLSCADDVESRIVTGGKTPGNSDWAVRHGPFDEGTFEEEELGGSHWTLLVNEVNRHV 167
BLAST of jgi.p|Trimin1|143585 vs. uniprot
Match: A0A6H5JEP9_9PHAE (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JEP9_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 9.150e-17 Identity = 40/70 (57.14%), Postives = 51/70 (72.86%), Query Frame = 1 Query: 7 FQSPISPDELAGLSCADDVESNIVTGGKTPGNS--DWAVRHGPFDEGTFEEEELGGSHWTLLVNEVNRYV 210 F++ ++ DELAGLSC DVE+ +VTGG+ N+ DW V HGPF+E F LG +HWTLLVNEVNR+V Sbjct: 95 FETILTKDELAGLSCCPDVEARVVTGGRYVDNAGKDWEVEHGPFEEKMFSN--LGETHWTLLVNEVNRHV 162
BLAST of jgi.p|Trimin1|143585 vs. uniprot
Match: A0A2A4Y4U0_9GAMM (JmjC domain-containing protein n=2 Tax=Ectothiorhodospiraceae bacterium TaxID=2026737 RepID=A0A2A4Y4U0_9GAMM) HSP 1 Score: 82.0 bits (201), Expect = 9.550e-17 Identity = 40/70 (57.14%), Postives = 48/70 (68.57%), Query Frame = 1 Query: 1 PRFQSPISPDELAGLSCADDVESNIVTGGKTPGNSDWAVRHGPFDEGTFEEEELGGSHWTLLVNEVNRYV 210 P FQ PI+PDELAGL+C DDVES ++ + G S W+V HGP DE F + L +HWTLLV E NRYV Sbjct: 33 PGFQCPITPDELAGLACEDDVESRLIQ--EHSGPSPWSVEHGPLDENRFSD--LPETHWTLLVQECNRYV 98
BLAST of jgi.p|Trimin1|143585 vs. uniprot
Match: A0A251X9A0_9GAMM (JmjC domain-containing protein n=2 Tax=Thioflexithrix psekupsensis TaxID=1570016 RepID=A0A251X9A0_9GAMM) HSP 1 Score: 76.3 bits (186), Expect = 1.130e-14 Identity = 37/70 (52.86%), Postives = 47/70 (67.14%), Query Frame = 1 Query: 1 PRFQSPISPDELAGLSCADDVESNIVTGGKTPGNSDWAVRHGPFDEGTFEEEELGGSHWTLLVNEVNRYV 210 P F+ PI+PDELAGL+C + VES ++ + G W VRHGPF E F + L +HWTLLV EVNR+V Sbjct: 31 PHFKPPITPDELAGLACEEGVESRLIL--EKHGKRPWEVRHGPFPESVFAK--LPKTHWTLLVQEVNRHV 96
BLAST of jgi.p|Trimin1|143585 vs. uniprot
Match: A0A3B1BES7_9ZZZZ (JmjC domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A3B1BES7_9ZZZZ) HSP 1 Score: 75.5 bits (184), Expect = 2.220e-14 Identity = 39/70 (55.71%), Postives = 47/70 (67.14%), Query Frame = 1 Query: 1 PRFQSPISPDELAGLSCADDVESNIVTGGKTPGNSDWAVRHGPFDEGTFEEEELGGSHWTLLVNEVNRYV 210 P F SPISPDELAGL+C D+VES IV + G WA+R GPFD+ F L +HWTLLV E N+Y+ Sbjct: 33 PDFTSPISPDELAGLACEDEVESRIVL--ERDGPQPWALRIGPFDDEHFAH--LPETHWTLLVQECNKYL 98
BLAST of jgi.p|Trimin1|143585 vs. uniprot
Match: A0A3D4PVR6_9GAMM (Cupin n=2 Tax=unclassified Cellvibrio TaxID=2624793 RepID=A0A3D4PVR6_9GAMM) HSP 1 Score: 75.1 bits (183), Expect = 2.960e-14 Identity = 40/71 (56.34%), Postives = 50/71 (70.42%), Query Frame = 1 Query: 1 PRFQSPISPDELAGLSCADDVESNIVT-GGKTPGNSDWAVRHGPFDEGTFEEEELGGSHWTLLVNEVNRYV 210 P F+SP+SPDELAGL+ ++VES IV G+TP W +R+GPFDE TFE L SHWTLLV ++YV Sbjct: 33 PGFESPLSPDELAGLALEEEVESRIVLENGETP----WELRNGPFDEKTFET--LPESHWTLLVQAADQYV 97
BLAST of jgi.p|Trimin1|143585 vs. uniprot
Match: A0A2A4WM74_9GAMM (Transcription factor n=1 Tax=Thiotrichaceae bacterium TaxID=2030882 RepID=A0A2A4WM74_9GAMM) HSP 1 Score: 75.1 bits (183), Expect = 3.040e-14 Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 1 Query: 1 PRFQSPISPDELAGLSCADDVESNIVTGGKTPGNSDWAVRHGPFDEGTFEEEELGGSHWTLLVNEVNRYV 210 P F+SP+S DE+AG++C + VES ++ + G W + HGPFDE F E L SHWTLL+ EV++YV Sbjct: 36 PGFKSPLSADEIAGMACEEGVESRLII--ERDGKQKWQLSHGPFDESIFSE--LPASHWTLLIQEVHKYV 101
BLAST of jgi.p|Trimin1|143585 vs. uniprot
Match: A0A382PZP2_9ZZZZ (JmjC domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382PZP2_9ZZZZ) HSP 1 Score: 71.6 bits (174), Expect = 3.960e-14 Identity = 35/70 (50.00%), Postives = 47/70 (67.14%), Query Frame = 1 Query: 1 PRFQSPISPDELAGLSCADDVESNIVTGGKTPGNSDWAVRHGPFDEGTFEEEELGGSHWTLLVNEVNRYV 210 P F P+SP+ELAGLSC ++ ES +VTG + N+ W + +GPFDE TF + L WTLLV V+RY+ Sbjct: 29 PNFICPLSPEELAGLSCEEEFESRLVTG--STNNNIWKITNGPFDETTFSK--LPKKEWTLLVQGVDRYI 94
BLAST of jgi.p|Trimin1|143585 vs. uniprot
Match: A0A3B0Z117_9ZZZZ (JmjC domain-containing protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0Z117_9ZZZZ) HSP 1 Score: 74.3 bits (181), Expect = 5.820e-14 Identity = 32/70 (45.71%), Postives = 50/70 (71.43%), Query Frame = 1 Query: 1 PRFQSPISPDELAGLSCADDVESNIVTGGKTPGNSDWAVRHGPFDEGTFEEEELGGSHWTLLVNEVNRYV 210 P F++P+S +E+AG++C + +ES ++ + G++ W +RHGPFDE F E L SHWTLL+ EV++YV Sbjct: 39 PGFKTPLSANEIAGMACEEGIESRLIL--ERDGDTKWQLRHGPFDESVFSE--LPQSHWTLLIQEVHKYV 104 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|143585 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4228 ID=mRNA_4228|Name=jgi.p|Trimin1|143585|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=210bp|location=Sequence derived from alignment at Contig_10:155624..155833- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CCCAGATTTCAGAGCCCCATATCACCGGATGAGCTGGCGGGCCTCTCCTGback to top protein sequence of jgi.p|Trimin1|143585 >Trimin1|143585|gw1.10.133.1 ID=Trimin1|143585|gw1.10.133.1|Name=jgi.p|Trimin1|143585|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=70bp PRFQSPISPDELAGLSCADDVESNIVTGGKTPGNSDWAVRHGPFDEGTFEback to top mRNA from alignment at Contig_10:155624..155833- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_4228 ID=mRNA_4228|Name=jgi.p|Trimin1|143585|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=210bp|location=Sequence derived from alignment at Contig_10:155624..155833- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_10:155624..155833- >mRNA_4228 ID=mRNA_4228|Name=jgi.p|Trimin1|143585|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=210bp|location=Sequence derived from alignment at Contig_10:155624..155833- (Tribonema minus UTEX_B_3156 )back to top |