mRNA_4134 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|155685
Unique NamemRNA_4134
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|155685 vs. uniprot
Match: A0A835Z3F1_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3F1_9STRA)

HSP 1 Score: 120 bits (300), Expect = 4.030e-34
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:    1 QQRLLLLRHASKCPAEANKCPVTPHCANMKKLWQHIALCKVQTCNVXXXXXXXXXXXXXXXXXDHKCAVCAPVR 222
            QQRLLLLRHASKCPAEANKCPVTPHCANMKKLWQHIALCKVQTCNVXXXXXXXXXXXXXXXXXDHKCAVCAPVR
Sbjct:    1 QQRLLLLRHASKCPAEANKCPVTPHCANMKKLWQHIALCKVQTCNVXXXXXXXXXXXXXXXXXDHKCAVCAPVR 74
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BLAST of jgi.p|Trimin1|155685 vs. uniprot
Match: B8LBX0_THAPS (Histone acetyltransferase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LBX0_THAPS)

HSP 1 Score: 77.8 bits (190), Expect = 2.390e-17
Identity = 55/74 (74.32%), Postives = 60/74 (81.08%), Query Frame = 1 
Query:    1 QQRLLLLRHASKCPAEANKCPVTPHCANMKKLWQHIALCKVQTCNVXXXXXXXXXXXXXXXXXDHKCAVCAPVR 222
            QQRLLLLRHA+KCP + N+CPVTPHCA MK+LW+HIA CK Q C  XXXXXXXXXXXXXXXXX     VC PVR
Sbjct:    1 QQRLLLLRHAAKCPHQDNQCPVTPHCAGMKRLWKHIAECKDQKCVXXXXXXXXXXXXXXXXXXXXXXPVCGPVR 74
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BLAST of jgi.p|Trimin1|155685 vs. uniprot
Match: A0A6V0BSR0_9STRA (Histone acetyltransferase n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6V0BSR0_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 4.530e-17
Identity = 43/74 (58.11%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:    1 QQRLLLLRHASKCPAEANKCPVTPHCANMKKLWQHIALCKVQTCNVXXXXXXXXXXXXXXXXXDHKCAVCAPVR 222
            QQRLLLLRHAS+C  ++N CPVTPHCANMKKLW+HIA CK Q CNV XX              + +C  C PVR
Sbjct:  692 QQRLLLLRHASRCEHKSN-CPVTPHCANMKKLWEHIAHCKDQYCNVAXXLSSRYVLSHYRRCKNEECPACGPVR 764
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BLAST of jgi.p|Trimin1|155685 vs. uniprot
Match: A0A7S4S4V4_9STRA (Histone acetyltransferase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S4V4_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 6.080e-17
Identity = 56/74 (75.68%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:    1 QQRLLLLRHASKCPAEANKCPVTPHCANMKKLWQHIALCKVQTCNVXXXXXXXXXXXXXXXXXDHKCAVCAPVR 222
            QQRLLLLRHASKC  E  KCP+TPHC  MK LW+HIA CK Q CNV XXXXXXXXXXXXXXXX   CA C PVR
Sbjct:  109 QQRLLLLRHASKCEYENGKCPITPHCQEMKTLWKHIASCKDQNCNVRXXXXXXXXXXXXXXXXXXXCAACGPVR 182
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BLAST of jgi.p|Trimin1|155685 vs. uniprot
Match: A0A7S3QH66_9STRA (Histone acetyltransferase (Fragment) n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QH66_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 6.090e-17
Identity = 40/74 (54.05%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:    1 QQRLLLLRHASKCPAEANKCPVTPHCANMKKLWQHIALCKVQTCNVXXXXXXXXXXXXXXXXXDHKCAVCAPVR 222
            QQRLLLLRHASKC AE  KC VTPHCA+MK+LW HI+ C  + C V                 D KC  CAPVR
Sbjct:  584 QQRLLLLRHASKCDAEDGKCEVTPHCASMKRLWAHISTCAQKDCQVAHCLSSRYVLMHYRKCKDSKCPACAPVR 657
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BLAST of jgi.p|Trimin1|155685 vs. uniprot
Match: A0A7S4S3L3_9STRA (Histone acetyltransferase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S3L3_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 6.160e-17
Identity = 56/74 (75.68%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:    1 QQRLLLLRHASKCPAEANKCPVTPHCANMKKLWQHIALCKVQTCNVXXXXXXXXXXXXXXXXXDHKCAVCAPVR 222
            QQRLLLLRHASKC  E  KCP+TPHC  MK LW+HIA CK Q CNV XXXXXXXXXXXXXXXX   CA C PVR
Sbjct:  109 QQRLLLLRHASKCEYENGKCPITPHCQEMKTLWKHIASCKDQNCNVRXXXXXXXXXXXXXXXXXXXCAACGPVR 182
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BLAST of jgi.p|Trimin1|155685 vs. uniprot
Match: A0A7S1Z8B2_9STRA (Histone acetyltransferase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z8B2_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 6.180e-17
Identity = 56/74 (75.68%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:    1 QQRLLLLRHASKCPAEANKCPVTPHCANMKKLWQHIALCKVQTCNVXXXXXXXXXXXXXXXXXDHKCAVCAPVR 222
            QQRLLLLRHASKC  E  KCP+TPHC  MK LW+HIA CK Q CNV XXXXXXXXXXXXXXXX   CA C PVR
Sbjct:  471 QQRLLLLRHASKCEYENGKCPITPHCQEMKTLWKHIASCKDQNCNVRXXXXXXXXXXXXXXXXXXXCAACGPVR 544
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BLAST of jgi.p|Trimin1|155685 vs. uniprot
Match: A0A7S1UV84_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UV84_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.570e-16
Identity = 57/74 (77.03%), Postives = 59/74 (79.73%), Query Frame = 1 
Query:    1 QQRLLLLRHASKCPAEANKCPVTPHCANMKKLWQHIALCKVQTCNVXXXXXXXXXXXXXXXXXDHKCAVCAPVR 222
            QQRLLLLRHASKC  EA KCPVTPHCA+MKKLW+HIA CK Q C V XXXXXXXXXXXXXXXX      C PVR
Sbjct:  655 QQRLLLLRHASKCQYEAGKCPVTPHCASMKKLWEHIAHCKNQQCTVQXXXXXXXXXXXXXXXXXXXXPACGPVR 728
[Close]
BLAST of jgi.p|Trimin1|155685 vs. uniprot
Match: A0A7S2VVC1_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VVC1_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.980e-16
Identity = 57/74 (77.03%), Postives = 60/74 (81.08%), Query Frame = 1 
Query:    1 QQRLLLLRHASKCPAEANKCPVTPHCANMKKLWQHIALCKVQTCNVXXXXXXXXXXXXXXXXXDHKCAVCAPVR 222
            QQRLLLLRHA+KCP E  KCPVTPHCA MK+LW+HIA CK Q C VXXXXXXXXXXXXXXXXX     VC PVR
Sbjct:  199 QQRLLLLRHAAKCPHENGKCPVTPHCAGMKRLWKHIAECKDQKCQVXXXXXXXXXXXXXXXXXXXXXPVCMPVR 272
[Close]
BLAST of jgi.p|Trimin1|155685 vs. uniprot
Match: A0A1Z5JQE5_FISSO (Histone acetyltransferase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JQE5_FISSO)

HSP 1 Score: 80.5 bits (197), Expect = 5.480e-16
Identity = 52/74 (70.27%), Postives = 56/74 (75.68%), Query Frame = 1 
Query:    1 QQRLLLLRHASKCPAEANKCPVTPHCANMKKLWQHIALCKVQTCNVXXXXXXXXXXXXXXXXXDHKCAVCAPVR 222
            QQRLLLLRHAS+C  E   CPVTPHCA+MKKLW HIA CK Q C V XXXXXXXXXXXXX   + +C  C PVR
Sbjct:  613 QQRLLLLRHASRCQHELGTCPVTPHCASMKKLWDHIAHCKDQQCKVQXXXXXXXXXXXXXRCKNARCPSCGPVR 686
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155685 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z3F1_9STRA4.030e-34100.00Histone acetyltransferase (Fragment) n=1 Tax=Tribo... [more]
B8LBX0_THAPS2.390e-1774.32Histone acetyltransferase (Fragment) n=1 Tax=Thala... [more]
A0A6V0BSR0_9STRA4.530e-1758.11Histone acetyltransferase n=1 Tax=Pseudo-nitzschia... [more]
A0A7S4S4V4_9STRA6.080e-1775.68Histone acetyltransferase n=1 Tax=Ditylum brightwe... [more]
A0A7S3QH66_9STRA6.090e-1754.05Histone acetyltransferase (Fragment) n=2 Tax=Chaet... [more]
A0A7S4S3L3_9STRA6.160e-1775.68Histone acetyltransferase n=1 Tax=Ditylum brightwe... [more]
A0A7S1Z8B2_9STRA6.180e-1775.68Histone acetyltransferase n=1 Tax=Ditylum brightwe... [more]
A0A7S1UV84_9STRA1.570e-1677.03Histone acetyltransferase (Fragment) n=1 Tax=Gramm... [more]
A0A7S2VVC1_9STRA3.980e-1677.03Histone acetyltransferase (Fragment) n=1 Tax=Tripa... [more]
A0A1Z5JQE5_FISSO5.480e-1670.27Histone acetyltransferase n=2 Tax=Fistulifera sola... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_20contigContig_20:759232..760354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|155685|gw1.20.290.1
BRITEko00000,ko00001,ko01000,ko03000,ko03029,ko03036
KEGG Pathwayko04024,ko04066,ko04068,ko04110,ko04310,ko04330,ko04350,ko04520,ko04630,ko04720,ko04916,ko04919,ko04922,ko05016,ko05152,ko05161,ko05164,ko05165,ko05166,ko05167,ko05168,ko05169,ko05200,ko05203,ko05206,ko05211,ko05215,map04024,map04066,map04068,map04110,map04310,map04330,map04350,map04520,map04630,map04720,map04916,map04919,map04922,map05016,map05152,map05161,map05164,map05165,map05166,map05167,map05168,map05169,map05200,map05203,map05206,map05211,map05215
KEGG koko:K04498
EC2.3.1.48
Descriptionhistone acetyltransferase activity
COG categoryBK
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5076@1|root,KOG1778@2759|Eukaryota
Evalue3.91e-18
Seed ortholog35128.Thaps263786
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, TAZ-type
Ec32 orthologEc-11_001290.1
TranscriptId156007
TrackFilteredModels1
ProteinId155685
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155685gene_4134Tribonema minus UTEX_B_3156 geneContig_20 759232..760354 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155685Trimin1|155685|gw1.20.290.1Tribonema minus UTEX_B_3156 polypeptideContig_20 759232..760354 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4134_2exon_4134_2Tribonema minus UTEX_B_3156 exonContig_20 759232..759295 -
exon_4134_1exon_4134_1Tribonema minus UTEX_B_3156 exonContig_20 760197..760354 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4134CDS_4134Tribonema minus UTEX_B_3156 CDSContig_20 760197..760354 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4134 ID=mRNA_4134|Name=jgi.p|Trimin1|155685|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=222bp|location=Sequence derived from alignment at Contig_20:759232..760354- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGCAGCGGCTGCTGCTGCTGCGGCACGCGAGCAAGTGCCCTGCGGAGGC
GAACAAGTGCCCGGTGACGCCGCACTGCGCCAACATGAAGAAGCTCTGGC
AGCACATCGCGCTCTGCAAGGTGCAGACGTGCAACGTGCCGCACTGCGTC
AGCTCCAGGTTCGTGCTGAGCCACTACCACCGCTGCAAGGACCACAAGTG
CGCTGTCTGCGCGCCTGTGCGC
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protein sequence of jgi.p|Trimin1|155685

>Trimin1|155685|gw1.20.290.1 ID=Trimin1|155685|gw1.20.290.1|Name=jgi.p|Trimin1|155685|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=74bp
QQRLLLLRHASKCPAEANKCPVTPHCANMKKLWQHIALCKVQTCNVPHCV
SSRFVLSHYHRCKDHKCAVCAPVR
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mRNA from alignment at Contig_20:759232..760354-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4134 ID=mRNA_4134|Name=jgi.p|Trimin1|155685|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1123bp|location=Sequence derived from alignment at Contig_20:759232..760354- (Tribonema minus UTEX_B_3156 )
CAGCAGCGGCTGCTGCTGCTGCGGCACGCGAGCAAGTGCCCTGCGGAGGC
GAACAAGTGCCCGGTGACGCCGCACTGCGCCAACATGAAGAAGCTCTGGC
AGCACATCGCGCTCTGCAAGGTGCAGACGTGCAACGTGCCGCACTGCGTC
AGCTCCAGGTGCGTGGCTGGGGTTAGGGTTGGGGCGCGTGCGCGGCGGCG
CTGCGCTGCACTCGTTGCATGCCCGCATGCAATGCCCTGCCTGCCTGCAT
GTATGTATGCGTGCGTGTAGGGCGCTGTAGCGCGCGGGCGCGGCACTGTC
CCGTGCAGAACCGTCGGCGTGCAAGTGAGAAGGGGTCACCCCAACGCTAC
TATTGAGGAGCGCGTCAGCCACACCCGCACCGACGTACGCATCAAACATG
CTTCATTCTAGGTCCATGAAAGACGCCGAAGCCAGGATGGCCGCAGGGGT
TGTGCGCTGGGGCCACTGCTCAGCAACCCTAGGGTTAGAACTGGGTTGAG
GGCTTGGCCCTGCTTAGGTAGCCGTCGGTGCGGTCACTCCCAAGCTCTGA
GCACAGGCCTCTGACGTCATGACGACGTCTGCAAGCGCCTGAAGTTGAAG
TTGAACTTGCAGTTGAAGGTCGTCTCGCCGCTCTGCGCAACACTTGACAT
CAGGAGGCCGCTGCAGGCCGCCAGCAGCTGCACGCGCGATAAACCTGTGC
TCCGCCCCCCCTCCCCCCCCCCCCCACACACTCACGGAGCACTGCCGCAG
CACGGCCCCGCGCGCAGCAGCGCTCATTGCGTCTGCAGCCCGACGTGACG
TGCACGTGCGGCGCCTTGCACCGCGGCGACAGCTTTCATCATGGCGGGAG
CACACTGCTACTTACAATCATCACACCGGCCTCGCGCCGCCCCCTGCGCC
ACAACCTTACATACCTATACCTACCCGTGCGGATTTGCGCAGCGCGCTCA
CCTGGAAGATGTCGTACCTGAAGACGTCGAGGTTGAATCACTTCCGCAAC
CCCCCCACCACTCCCCCCCCCCCCCCCCCCCCCACCCGCCCGCCCTCTGC
TGCCCGCAGGTTCGTGCTGAGCCACTACCACCGCTGCAAGGACCACAAGT
GCGCTGTCTGCGCGCCTGTGCGC
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Coding sequence (CDS) from alignment at Contig_20:759232..760354-

>mRNA_4134 ID=mRNA_4134|Name=jgi.p|Trimin1|155685|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=222bp|location=Sequence derived from alignment at Contig_20:759232..760354- (Tribonema minus UTEX_B_3156 )
CAGCAGCGGCTGCTGCTGCTGCGGCACGCGAGCAAGTGCCCTGCGGAGGC
GAACAAGTGCCCGGTGACGCCGCACTGCGCCAACATGAAGAAGCTCTGGC
AGCACATCGCGCTCTGCAAGGTGCAGACGTGCAACGTGCCGCACTGCGTC
AGCTCCAGGTTCGTGCTGAGCCACTACCACCGCTGCAAGGACCACAAGTG
CGCTGTCTGCGCGCCTGTGCGC
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