mRNA_4113 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|162189
Unique NamemRNA_4113
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|162189 vs. uniprot
Match: A0A836CHG8_9STRA (Folate transporter (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHG8_9STRA)

HSP 1 Score: 466 bits (1199), Expect = 9.460e-166
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 1 
Query:    1 HHLIAGTVAGVTSTTALYPLDLIKTHYQAYDKGKSPYRSLGAAFTTIVKQNGWSGLYSGLGPAVLGSGVSWGGYFYLYEWAKTSMRRFSDTEKLGPVHHLTAGMAAGNALVLLTNPIWLVKTRMQLQQXXXXXXTAAAGRRPYTGLSDAVATIVREEGALALYKGVVPALLLSGQGALQFAAYEWLKARVPRNLAQNDPHESLLMGASSKVFASLVRTPNMLLTLIRTAAARSHIINPTRAC 726
            HHLIAGTVAGVTSTTALYPLDLIKTHYQAYDKGKSPYRSLGAAFTTIVKQNGWSGLYSGLGPAVLGSGVSWGGYFYLYEWAKTSMRRFSDTEKLGPVHHLTAGMAAGNALVLLTNPIWLVKTRMQLQQXXXXXXTAAAGRRPYTGLSDAVATIVREEGALALYKGVVPALLLSGQGALQFAAYEWLKARVPRNLAQNDPHESLLMGASSKVFASLVRTPNMLLTLIRTAAARSHIINPTRAC
Sbjct:    1 HHLIAGTVAGVTSTTALYPLDLIKTHYQAYDKGKSPYRSLGAAFTTIVKQNGWSGLYSGLGPAVLGSGVSWGGYFYLYEWAKTSMRRFSDTEKLGPVHHLTAGMAAGNALVLLTNPIWLVKTRMQLQQXXXXXXTAAAGRRPYTGLSDAVATIVREEGALALYKGVVPALLLSGQGALQFAAYEWLKARVPRNLAQNDPHESLLMGASSKVFASLVRTPNMLLTLIRTAAARSHIINPTRAC 242
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BLAST of jgi.p|Trimin1|162189 vs. uniprot
Match: D7FQB8_ECTSI (Folate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB8_ECTSI)

HSP 1 Score: 265 bits (677), Expect = 5.400e-86
Identity = 136/224 (60.71%), Postives = 163/224 (72.77%), Query Frame = 1 
Query:    1 HHLIAGTVAGVTSTTALYPLDLIKTHYQAYDKGKSPYRSLGAAFTTIVKQNGWSGLYSGLGPAVLGSGVSWGGYFYLYEWAKTSMR-RFSDTEKLGPVHHLTAGMAAGNALVLLTNPIWLVKTRMQLQQXXXXXXTAAAGRRPYTGLSDAVATIVREEGALALYKGVVPALLLSGQGALQFAAYEWLKARVPRNLAQNDPHESLLMGASSKVFASLVRTPNMLL 669
            +HLIAGT AGV +T ALYPLDL+KT YQ YDKG SPY+SLG AF TI+++ G   LY GLGPA+LG+ V+WGG+FY YE  KT++R R      LG VHHL AG  AG  +VL TNP+W++KTRMQLQ         + G RPY+GL DAV TI REEG LALYKG VPAL+L GQGA+QFA YEWLKARVP+   +N P ESLLMG +SK+ ++LV  P   L
Sbjct:   43 NHLIAGTTAGVVTTAALYPLDLVKTRYQVYDKGPSPYKSLGTAFRTIIREEGARALYQGLGPALLGNAVAWGGFFYCYEKIKTAIRARVPQEADLGAVHHLGAGYVAGAMMVLATNPVWMIKTRMQLQDKK----AKSGGVRPYSGLMDAVRTITREEGPLALYKGAVPALMLCGQGAVQFAVYEWLKARVPKR-NENTPQESLLMGGASKILSTLVTYPTQYL 261
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BLAST of jgi.p|Trimin1|162189 vs. uniprot
Match: A0A835YH58_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH58_9STRA)

HSP 1 Score: 265 bits (677), Expect = 7.620e-85
Identity = 141/250 (56.40%), Postives = 171/250 (68.40%), Query Frame = 1 
Query:    4 HLIAGTVAGVTSTTALYPLDLIKTHYQAYDKGKSPYRSLGAAFTTIVKQNGWSGLYSGLGPAVLGSGVSWGGYFYLYEWAKTSMRRFSDTEKLGPVHHLTAGMAAGNALVLLTNPIWLVKTRMQLQQXXXXXXTAAAGRRPYTGLSDAVATIVREEGALALYKGVVPALLLSGQGALQFAAYEWLKARVPRNLAQNDPHESLLMGASSKVFASLVRTPNMLL---------TLIRTAAARSHIINPTRAC 726
            HLIAGT AG+ STTA YPLDL+KT YQAY +G SPY SL +AF TI +Q GW  LY+GL P+V G G++WG YFYLY+ +K +++  +  E+L   HHLTAG    N LVLL NP+WLVKTR+QLQ       T   GRRPY G +DA+ TI REEGALALYKG+VPA+LLS QGALQFAAYEWLK  VPR+L Q+ P ESL+MG  SK+FAS+V  P  ++           +  AAA   I   T  C
Sbjct:   51 HLIAGTAAGLVSTTAFYPLDLVKTRYQAYHQGASPYASLSSAFKTIAEQEGWRALYAGLVPSVWGGGLAWGAYFYLYQMSKDALQTGTGAEQLNVSHHLTAG----NILVLLGNPVWLVKTRLQLQTRDN---TQRLGRRPYRGFTDALVTIAREEGALALYKGIVPAMLLSTQGALQFAAYEWLKGWVPRDLQQSKPVESLVMGGGSKIFASVVTYPTQVIKTRLQDRAAAAVSAAAAGRSIYTGTAQC 293
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BLAST of jgi.p|Trimin1|162189 vs. uniprot
Match: W7T4J3_9STRA (Mitochondrial folate transporter carrier-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T4J3_9STRA)

HSP 1 Score: 186 bits (471), Expect = 5.060e-53
Identity = 107/239 (44.77%), Postives = 142/239 (59.41%), Query Frame = 1 
Query:    4 HLIAGTVAGVTSTTALYPLDLIKTHYQAYDKGKSPYRSLGAAFTTIVKQNGWSGLYSGLGPAVLGSGVSWGGYFYLYEWAKTSMRRFSDTEKLGPVHHLTAGMAAGNALVLLTNPIWLVKTRMQLQ-------QXXXXXXTAAA--------GRR-PYTGLSDAVATIVREEGALALYKGVVPALLLSGQGALQFAAYEWLKARVPRNLAQNDPHES-----LLMGASSKVFASLVRTP 657
            HL+AG VAG  S+  L PLDLIK H Q YD+   P+ S+     +IV+Q G+ GLY GL PA+L +G+SWGGYFY YE AK   R      ++  VHHL +   AG  +V LTNP+WL+KTRMQLQ       +      TA          G++  YTG++ A+ TIVREEG L LYKG++PALLL+  GA+QF  YEWLK  V       +P+++      ++G  +K+ A LV  P
Sbjct:   78 HLVAGLVAGAVSSALLLPLDLIKVHLQVYDRAGRPFPSMYKGMQSIVQQEGYRGLYKGLTPALLANGLSWGGYFYFYEHAKN--RYLRQHRQITSVHHLLSAFEAGIIMVFLTNPLWLIKTRMQLQPGGASALESMTKAVTAPIVASTASHLGKQIAYTGVTQALRTIVREEGVLGLYKGILPALLLTSHGAIQFVTYEWLKKVV-------EPYQAPVFSFSVLGGMAKILAGLVTYP 307
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BLAST of jgi.p|Trimin1|162189 vs. uniprot
Match: A0A485KGD8_9STRA (Aste57867_4021 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KGD8_9STRA)

HSP 1 Score: 178 bits (452), Expect = 1.520e-51
Identity = 109/230 (47.39%), Postives = 136/230 (59.13%), Query Frame = 1 
Query:    4 HLIAGTVAGVTSTTALYPLDLIKTHYQAYDKGKSPYRSLGAAFTTIVKQNGWS--------GLYSGLGPAVLGSGVSWGGYFYLYEWAKTSMRRFSDTEKLGP--VHHLTAGMAAGNALVLLTNPIWLVKTRMQLQQXXXXXXTAAAGRRPYTGLSDAVATIVREEGALALYKGVVPALLLSGQGALQFAAYEWLKARVPRNLAQ--NDPHESLLMGASSKVFASLVRTP 657
            H +AG  AG  ST  LYPLDL+KT YQ ++    P+RSL  AF +IV+ +G +        GLY G+ PA+ G+ +SWG YF  YE AK+    F +     P  V H  AG+ AG   V LTNPIWLVK RMQ+Q          A   PYT +++A+  IV EEGALALYKGVVPALLL+  GA +F AYEWLK     N+    + PH SL MGA ++ FAS    P
Sbjct:   14 HCVAGVAAGGFSTAVLYPLDLVKTRYQVHENSPKPFRSLAHAFASIVRTDGAAPTRRYHVRGLYEGMSPALYGTTISWGLYFLFYEHAKS----FYEQHPAIPASVGHFAAGIQAGAMCVPLTNPIWLVKVRMQVQ-------ATHATAVPYTSMTNALQRIVAEEGALALYKGVVPALLLTTHGAFKFVAYEWLKKEYQTNVGSTLSIPH-SLAMGALAQAFASTATYP 231
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BLAST of jgi.p|Trimin1|162189 vs. uniprot
Match: A0A1W0A9M0_9STRA (Mitochondrial folate transporter/carrier n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9M0_9STRA)

HSP 1 Score: 169 bits (429), Expect = 4.220e-48
Identity = 101/224 (45.09%), Postives = 133/224 (59.38%), Query Frame = 1 
Query:    4 HLIAGTVAGVTSTTALYPLDLIKTHYQAYDKGKSPYRSLGAAFTTIVKQNG-----WSGLYSGLGPAVLGSGVSWGGYFYLYEWAKTSMRRFSDTEKLGPVHHLTAGMAAGNALVLLTNPIWLVKTRMQLQQXXXXXXTAAAGRRPYTGLSDAVATIVREEGALALYKGVVPALLLSGQGALQFAAYEWLKARVPRNLAQNDP-HESLLMGASSKVFASLVRTP 657
            H +AG VAG  ST ALYPLDL+K  YQ +++    YRSL  AFT+++K  G     W  +Y+G+ PA+ G+ +SWG YFY YE AKT     +    +G   H  +G+ AG   V LTNPIWL+K RMQ+Q            + PY  +SDA   IV EEG  ALYKGVVPALLL+  GA +F AYE LK+    +++++     SL +GA S+ FAS    P
Sbjct:   13 HCVAGIVAGGVSTAALYPLDLVKVRYQVHEQSPRAYRSLFHAFTSLLKAPGSTHWHWRAMYTGMSPALYGTTMSWGLYFYFYEHAKTMYANSTIPPSIG---HFLSGIQAGVLCVPLTNPIWLIKVRMQVQ----------GTQVPYKSVSDAFRRIVAEEGIAALYKGVVPALLLTTHGAFKFVAYEKLKSEYYEHVSKDMTIPASLTIGAFSQAFASAATYP 223
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BLAST of jgi.p|Trimin1|162189 vs. uniprot
Match: A0A7S2XN66_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XN66_9STRA)

HSP 1 Score: 169 bits (427), Expect = 6.780e-48
Identity = 115/270 (42.59%), Postives = 146/270 (54.07%), Query Frame = 1 
Query:    1 HH----LIAGTVAGVTSTTALYPLDLIKTHYQAY-DKGKSPYRSLGAAFTT-------IVKQNGWSGLYSGLGPAVLGSGVSWGGYFYLYEWAKTSMRRFS-------DTE-KLGPVHHLTAGMAAGNALVLLTNPIWLVKTRMQLQQXXXXXXTAAAG---RRPYTGLSDAVATIVREEGALALYKGVVPALLLSGQGALQFAAYEWLK------ARVPRNLAQNDPHES-------------LLMGASSKVFASLVRTPNMLLTLIRT 684
            HH    ++AG + G  ST +L+PLDLIK  +QA  D G   YR+ G    T       +++  G  GLY GL PA++GS  SWGGYF+LYE  K  M           +TE KLG + +  A  +AG  +VLLTNP+WL+KTRMQLQ           G   +RPY  +SDAV TIVREEG LALYKG +PAL+L   G +QF AYE+LK       +  R  A +D  +              L MGA SKV AS    P   L +I+T
Sbjct:    8 HHAAAPMVAGILGGAVSTVSLFPLDLIKVRFQANEDPG---YRTKGFRRRTMLRTMGQVIRHEGLVGLYQGLAPALIGSAASWGGYFFLYEGMKKEMLHLKHEASPHDETEHKLGALENFGAACSAGAVMVLLTNPVWLIKTRMQLQMKNVMKERERDGLSMKRPYNNMSDAVRTIVREEGPLALYKGAIPALMLVSHGGIQFVAYEFLKNHFGAYTKEVRTQADSDGSKRNNVIERLEDSVGYLTMGAVSKVMASSTTYP---LQVIKT 271
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BLAST of jgi.p|Trimin1|162189 vs. uniprot
Match: A0A199VJH2_ANACO (Folate transporter 1, chloroplastic (Fragment) n=4 Tax=Ananas comosus TaxID=4615 RepID=A0A199VJH2_ANACO)

HSP 1 Score: 167 bits (423), Expect = 1.400e-46
Identity = 105/240 (43.75%), Postives = 138/240 (57.50%), Query Frame = 1 
Query:   13 AGTVAGVTSTTALYPLDLIKTHYQAYDKGKS---PYRSLGAAFTTIVKQNGWSGLYSGLGPAVLGSGVSWGGYFYLYEWAKTSMRRFSDTEKLGPVHHLTAGMAAGNALVLLTNPIWLVKTRMQLQQXXXXXXTAAAGRRPYTGLSDAVATIVREEGALALYKGVVPALLLSGQGALQFAAYE-------WLKARVPRNLAQNDPHESLL-------MGASSKVFASLVRTPNMLLTLIR 681
            AG VAG  +  AL+PLD+++T +Q  D   S    Y++ G A  TI +  G  GLY+G  PAVLGS VSWG YF+ Y  AK    +  D +KL P HHL +   AG  + L+TNPIWLVKTR+QLQ       T     +PY G SDA+ TI++EEG  ALY+G+ P LLL   GA+QF AYE       ++K+R  R   +N   E LL       +GA+SK+ A L+  P    +L R
Sbjct:   49 AGAVAGFATVAALHPLDVVRTRFQVSDGRPSILPQYKNTGHAIYTIARSEGLRGLYAGFSPAVLGSTVSWGLYFFFYSRAKQRYHK-GDNDKLSPGHHLASAAEAGALVCLITNPIWLVKTRLQLQ-------TPKHHSQPYAGFSDALRTILKEEGLSALYRGIGPGLLLVTHGAIQFTAYEELRSTFIYIKSREVRT--KNTGGEELLNSFDYATLGAASKLAAILLTYPYQASSLFR 278
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BLAST of jgi.p|Trimin1|162189 vs. uniprot
Match: A0A7S4D5I4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5I4_HETAK)

HSP 1 Score: 162 bits (411), Expect = 1.560e-46
Identity = 88/156 (56.41%), Postives = 102/156 (65.38%), Query Frame = 1 
Query:    4 HLIAGTVAGVTSTTALYPLDLIKTHYQAYDKGKSPYRSLGAAFTTIVKQNGWSGLYSGLGPAVLGSGVSWGGYFYLYEWAKTSMRRFSDTEKLGPVHHLTAGMAAGNALVLLTNPIWLVKTRMQLQQXXXXXXTAAAGRRPYTGLSDAVATIVREE 471
            HL+AGT AG+ ST ALYPLDLIK  YQA   G +PY SL      + ++ GW  LYSG+GPA+LGSGVSWGGYFY YE AK   R     ++LG  HHL A   AG  LVLLTNPIWL+KTR+QLQ        A AG   Y G  DA+ TI+REE
Sbjct:   56 HLVAGTTAGLVSTVALYPLDLIKVRYQAMLDGPAPYSSLLGGIKQVARKEGWRALYSGMGPALLGSGVSWGGYFYCYENAKKRYRGGGGAQRLGAGHHLLAAAEAGALLVLLTNPIWLIKTRLQLQVREGG---ARAGHH-YAGPLDALRTILREE 207
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BLAST of jgi.p|Trimin1|162189 vs. uniprot
Match: K3X3X3_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X3X3_GLOUD)

HSP 1 Score: 165 bits (418), Expect = 3.290e-46
Identity = 100/227 (44.05%), Postives = 131/227 (57.71%), Query Frame = 1 
Query:   13 AGTVAGVTSTTALYPLDLIKTHYQAYDKGKSPYRSLGAAFTTIVKQNGWSGLYSGLGPAVLGSGVSWGGYFYLYEWAKTSMRRFSDTEKL-GPVHHLTAGMAAGNALVLLTNPIWLVKTRMQLQQXXXXXX-TAAAGRR---------PYTGLSDAVATIVREEGALALYKGVVPALLLSGQGALQFAAYEWLKARVPRNLA-QNDPHESLLMGASSKVFASLVRTP 657
            +G  AG  ST  LYPLDL+K  YQ ++     YRSLG AF TIV + G   L+ G+ PA+ GS +SWG Y Y Y+ AK    R +DT  + G   +  +G+ AG   V +TNPIWL+K RMQ+Q        TA+AG+          PY G++DA   IV EEG +ALYKGVVPAL L+  GA +F AYE +K+   R+   + D   +L MGA S+  AS    P
Sbjct:   23 SGLGAGAISTALLYPLDLVKVRYQVHETSARRYRSLGHAFRTIVGEEGVRSLFRGMSPALYGSALSWGLYMYFYQNAKERYARLADTGMIQGSWQYFFSGIEAGVICVPITNPIWLIKIRMQVQSSAQLKASTASAGKDAALKLAQNVPYRGITDAFRRIVAEEGVMALYKGVVPALFLTTHGAFKFVAYETVKSVYQRHFGPEMDVIPTLAMGAISQAIASTATYP 249
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|162189 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CHG8_9STRA9.460e-166100.00Folate transporter (Fragment) n=1 Tax=Tribonema mi... [more]
D7FQB8_ECTSI5.400e-8660.71Folate transporter n=1 Tax=Ectocarpus siliculosus ... [more]
A0A835YH58_9STRA7.620e-8556.40Mitochondrial carrier domain-containing protein n=... [more]
W7T4J3_9STRA5.060e-5344.77Mitochondrial folate transporter carrier-like prot... [more]
A0A485KGD8_9STRA1.520e-5147.39Aste57867_4021 protein n=1 Tax=Aphanomyces stellat... [more]
A0A1W0A9M0_9STRA4.220e-4845.09Mitochondrial folate transporter/carrier n=1 Tax=T... [more]
A0A7S2XN66_9STRA6.780e-4842.59Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A199VJH2_ANACO1.400e-4643.75Folate transporter 1, chloroplastic (Fragment) n=4... [more]
A0A7S4D5I4_HETAK1.560e-4656.41Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
K3X3X3_GLOUD3.290e-4644.05Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_20contigContig_20:611788..614169 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|162189|e_gw1.20.250.1
KEGG TC2.A.29.10.1,2.A.29.10.2,2.A.29.10.3,2.A.29.10.5
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko02000,ko03011
KEGG rclassRC00062,RC00189,RC00676,RC01052
KEGG ReactionR02382,R02529,R02613,R03139,R04027,R04300,R06154,R06740
KEGG ModuleM00178
KEGG Pathwayko00260,ko00350,ko00360,ko00410,ko00950,ko00960,ko01100,ko01110,ko03010,map00260,map00350,map00360,map00410,map00950,map00960,map01100,map01110,map03010
KEGG koko:K00276,ko:K02935,ko:K15115
EC1.4.3.21
GOsGO:0001505,GO:0003674,GO:0005215,GO:0005310,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006082,GO:0006520,GO:0006544,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006766,GO:0006767,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006835,GO:0006839,GO:0006855,GO:0006862,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0008517,GO:0009069,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0009987,GO:0015075,GO:0015215,GO:0015230,GO:0015238,GO:0015318,GO:0015605,GO:0015711,GO:0015748,GO:0015849,GO:0015883,GO:0015884,GO:0015893,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0017144,GO:0019752,GO:0019866,GO:0022857,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031966,GO:0031967,GO:0031975,GO:0032592,GO:0034220,GO:0034641,GO:0035350,GO:0035461,GO:0042133,GO:0042221,GO:0042493,GO:0042558,GO:0042886,GO:0042887,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0046483,GO:0046655,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051180,GO:0051181,GO:0051182,GO:0051184,GO:0051186,GO:0051234,GO:0055085,GO:0065007,GO:0065008,GO:0071702,GO:0071704,GO:0071705,GO:0072337,GO:0072349,GO:0090482,GO:0098573,GO:0098656,GO:0098838,GO:1901360,GO:1901564,GO:1901605,GO:1901679,GO:1903825,GO:1904947,GO:1905039,GO:1990542,GO:1990548
Preferred nameSLC25A32
DescriptionBelongs to the mitochondrial carrier (TC 2.A.29) family
COG categoryU
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0764@1|root,KOG0764@2759|Eukaryota
Evalue8.85e-87
Seed ortholog2880.D7FQB8
Hectar predicted targeting categoryother localisation
TranscriptId162511
TrackFilteredModels1
ProteinId162189
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162189gene_4113Tribonema minus UTEX_B_3156 geneContig_20 611788..614169 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162189Trimin1|162189|e_gw1.20.250.1Tribonema minus UTEX_B_3156 polypeptideContig_20 611788..614169 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4113_3exon_4113_3Tribonema minus UTEX_B_3156 exonContig_20 611788..612209 -
exon_4113_2exon_4113_2Tribonema minus UTEX_B_3156 exonContig_20 612998..613073 -
exon_4113_1exon_4113_1Tribonema minus UTEX_B_3156 exonContig_20 613939..614169 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4113CDS_4113Tribonema minus UTEX_B_3156 CDSContig_20 613939..614169 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4113 ID=mRNA_4113|Name=jgi.p|Trimin1|162189|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=729bp|location=Sequence derived from alignment at Contig_20:611788..614169- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CACCACCTCATTGCGGGAACTGTGGCGGGCGTGACGTCCACCACAGCGCT
TTACCCACTGGACCTGATAAAGACGCATTATCAGGCATACGACAAGGGTA
AATCGCCGTACAGGTCGCTGGGGGCAGCCTTCACCACTATTGTCAAGCAG
AATGGATGGAGCGGGCTCTATTCTGGATTGGGACCTGCGGTGCTGGGCAG
CGGAGTATCGTGGGGAGGCTACTTTTACCTGTACGAGTGGGCAAAAACTT
CAATGCGGAGATTCTCGGACACTGAGAAGCTCGGCCCAGTACATCACCTT
ACTGCAGGCATGGCCGCCGGCAACGCGCTCGTCCTCCTCACCAACCCCAT
CTGGCTCGTCAAGACGCGCATGCAGCTGCAGCAGCAGCAGCAGCAGCGCT
CAACCGCTGCCGCCGGCAGGCGCCCCTACACGGGCCTGAGCGACGCCGTC
GCGACGATCGTGCGCGAGGAGGGCGCCCTCGCGCTGTACAAGGGCGTCGT
CCCCGCGCTGCTGCTGAGCGGCCAGGGCGCGCTGCAGTTTGCGGCGTACG
AGTGGCTCAAGGCGCGCGTGCCGCGCAACCTCGCGCAGAACGACCCCCAC
GAGAGCCTGCTCATGGGCGCCAGCAGCAAGGTCTTTGCCAGCCTGGTGAG
AACCCCCAACATGCTCTTGACACTTATTCGAACGGCAGCTGCACGATCTC
ACATAATTAACCCCACGAGAGCCTGCTAA
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protein sequence of jgi.p|Trimin1|162189

>Trimin1|162189|e_gw1.20.250.1 ID=Trimin1|162189|e_gw1.20.250.1|Name=jgi.p|Trimin1|162189|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=243bp
HHLIAGTVAGVTSTTALYPLDLIKTHYQAYDKGKSPYRSLGAAFTTIVKQ
NGWSGLYSGLGPAVLGSGVSWGGYFYLYEWAKTSMRRFSDTEKLGPVHHL
TAGMAAGNALVLLTNPIWLVKTRMQLQQQQQQRSTAAAGRRPYTGLSDAV
ATIVREEGALALYKGVVPALLLSGQGALQFAAYEWLKARVPRNLAQNDPH
ESLLMGASSKVFASLVRTPNMLLTLIRTAAARSHIINPTRAC*
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mRNA from alignment at Contig_20:611788..614169-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4113 ID=mRNA_4113|Name=jgi.p|Trimin1|162189|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2382bp|location=Sequence derived from alignment at Contig_20:611788..614169- (Tribonema minus UTEX_B_3156 )
CACCACCTCATTGCGGGAACTGTGGCGGGCGTGACGTCCACCACAGCGCT
TTACCCACTGGACCTGATAAAGACGCATTATCAGGCATACGACAAGGGTA
AATCGCCGTACAGGTCGCTGGGGGCAGCCTTCACCACTATTGTCAAGCAG
AATGGATGGAGCGGGCTCTATTCTGGATTGGGACCTGCGGTGCTGGGCAG
CGGAGTATCGTGGGGAGGCTACTTTTACCTGGTGAGTCAAGGCTGGCTGT
CACTCCGGTGCTACACAAGAACACAAGGGATGCTATTTTCCATGAAAGGC
TTTGATGAAACTTGGCGCACTCACGCCCAATCGTCCAGGTTGGAGCAAAT
GCGATGCAACGATTGCTGCCAAGTCGCCAAGCCGCTATGTGAGTTGATGT
GCCTCATTGGCCAAGAAAGTGTGTCGGTGTGCAAAGGTAGAGCTGCGCAG
GAACACAGTTGCTCGATTGGAACCTTCTCCGCACGTCGCTGTTGGGTACA
CGTAAGGCGCGTCACGCGGCTACTTAGGGTTAGGGTTAGGGTTAAGTGAC
CTGGGCAAGCAACAAGAACATCGCAGCGTTTGCGATCAGCACTTGTCAGC
CCACTTTGCAATCTCAAGGCGCTCGCACAACAGCGCGTTGACGCACGGTC
ACCTTAACAGCAACTCAGACTGTTGCGTTCACGCTTGTCAGTTCTTGCTG
GTTCGCATGGTGCTCCTGTCGATTATGCACACCTCACTAATAGAGCCACT
ATTTACCTCGCAACCAAAGCGCATGGACCTTGTAAGTGGACTTCAAGCGT
CACTGCGCTGCTGATGCAGCATCACTTATCCATTCACTCAGCGTGCACAT
TGGTGTAGCTTGAGCTAGAAGTGTAGAATTTTCCCAACGTCTGTGTCCGT
GTTAAAGTTGGCGCGCGCGATATTTTCCTCCACACACATGCATGCACGTA
TATGAGTTGTAAATGCTGGTGCGTCGCTTTTGTGCACCAGGTTTGTGTCG
TAACTTGCAACTCATGTGGCGCATGACTTGCAGCGCGCCAGCAGTGTGTG
AGCAATTGCCCTCTCCCCTGTGTCCCATCTGTCTTTTGCGCCGCAGTACG
AGTGGGCAAAAACTTCAATGCGGAGATTCTCGGACACTGAGAAGCTCGGC
CCAGTACATCACCTTACTGCAGGTGAGTTTGTTTGTGGTTATTATAGCTG
CGTGCTACATGTAGTGAAATGAGCGTCATCGCTTATGATAGCACCAGCAC
TGACTGACATGCTTATGCCACACGCAGCACACATCACCAGTAACTGTTCA
GTCCTGAAAGCCTGCAAGTGTGGTAAGCTCACGTCTTGGGCGAAGCTGCC
AATCACTGGCTGCTGCACCTGTCTCACTCAAAGGCTGACTTTGAGGATCA
TGGCGAAGCCCACACCACCGCCGCCTCACGCGCCTCGGCAGCAACTGCGT
GAGCGCTGTTCACACAGTGCCATGCCAGTCGTAAGGGTTAGGGCCAGGCC
CACACCACCACCGCCTCAAACGCGTCAGCCGCGCCCGCGCTAGCGCTGTT
CACGCTGGCACCGTTCACACAACGCACAGCGCGCAGAGGCTGCAGCTCCC
CAGCCTGAGCATCACCTCCATCTGCCGCCAGCAGCGCGCCTCGCGGCCTA
CGCCACCGCGGCTTCAAACGCCTCAGCCGCGCCGGCGCTAGCGCTGTTCA
CGCTAGCACCGTACACACAGCGCACAGCGCGCAGAGGCTTTTTTGTTCAT
ACTGAGCATCACCATCATCTGCAGTCAGCGGCGCGCCATGCGGCCTACAC
CTGCGCCGCCTCAAATGCCTCAGTGCCGGCTGCGCCAGCGCTGTTCACAC
AGCGCACAGCGCGCAGCAGGCCGCAGCACTCCAGCCTCAGCATCACCACC
ATCTGCAGTCAGCGCCGCCCTTCACAGTCGCACTGACGTCGCTCGCCGCC
GCCGCGCCAGGCATGGCCGCCGGCAACGCGCTCGTCCTCCTCACCAACCC
CATCTGGCTCGTCAAGACGCGCATGCAGCTGCAGCAGCAGCAGCAGCAGC
GCTCAACCGCTGCCGCCGGCAGGCGCCCCTACACGGGCCTGAGCGACGCC
GTCGCGACGATCGTGCGCGAGGAGGGCGCCCTCGCGCTGTACAAGGGCGT
CGTCCCCGCGCTGCTGCTGAGCGGCCAGGGCGCGCTGCAGTTTGCGGCGT
ACGAGTGGCTCAAGGCGCGCGTGCCGCGCAACCTCGCGCAGAACGACCCC
CACGAGAGCCTGCTCATGGGCGCCAGCAGCAAGGTCTTTGCCAGCCTGGT
GAGAACCCCCAACATGCTCTTGACACTTATTCGAACGGCAGCTGCACGAT
CTCACATAATTAACCCCACGAGAGCCTGCTAA
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Coding sequence (CDS) from alignment at Contig_20:611788..614169-

>mRNA_4113 ID=mRNA_4113|Name=jgi.p|Trimin1|162189|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=729bp|location=Sequence derived from alignment at Contig_20:611788..614169- (Tribonema minus UTEX_B_3156 )
CACCACCTCATTGCGGGAACTGTGGCGGGCGTGACGTCCACCACAGCGCT
TTACCCACTGGACCTGATAAAGACGCATTATCAGGCATACGACAAGGGTA
AATCGCCGTACAGGTCGCTGGGGGCAGCCTTCACCACTATTGTCAAGCAG
AATGGATGGAGCGGGCTCTATTCTGGATTGGGACCTGCGGTGCTGGGCAG
CGGAGTATCGTGGGGAGGCTACTTTTACCTGTACGAGTGGGCAAAAACTT
CAATGCGGAGATTCTCGGACACTGAGAAGCTCGGCCCAGTACATCACCTT
ACTGCAGGCATGGCCGCCGGCAACGCGCTCGTCCTCCTCACCAACCCCAT
CTGGCTCGTCAAGACGCGCATGCAGCTGCAGCAGCAGCAGCAGCAGCGCT
CAACCGCTGCCGCCGGCAGGCGCCCCTACACGGGCCTGAGCGACGCCGTC
GCGACGATCGTGCGCGAGGAGGGCGCCCTCGCGCTGTACAAGGGCGTCGT
CCCCGCGCTGCTGCTGAGCGGCCAGGGCGCGCTGCAGTTTGCGGCGTACG
AGTGGCTCAAGGCGCGCGTGCCGCGCAACCTCGCGCAGAACGACCCCCAC
GAGAGCCTGCTCATGGGCGCCAGCAGCAAGGTCTTTGCCAGCCTGGTGAG
AACCCCCAACATGCTCTTGACACTTATTCGAACGGCAGCTGCACGATCTC
ACATAATTAACCCCACGAGAGCCTGCTAA
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