mRNA_4108 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|162454
Unique NamemRNA_4108
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|162454 vs. uniprot
Match: A0A836CI49_9STRA (Bromo domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI49_9STRA)

HSP 1 Score: 434 bits (1116), Expect = 4.240e-153
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 1 
Query:    1 MHHPFLEEPPRIQSSNPAEKYKLGLVLDKPVALLYPGIADAYLEAIAEPMDLGTIRRMLGAGRVPSAQAFADTVLLVFNNAIAFNAPAVASDPGLATIVDACKALRRMFRWWCLEAFPDLPPGDAEAGXXXXXXXXXXXXXXXXXXXXXXPEESLRLTRAERDRQRALRVAKVMALRADKINCKKLVHYFKQKRNSPIKHFIGRVPVEQLTDYKVSYMVKLRLCPCSVHPEQFQLLHQQAWH 726
            MHHPFLEEPPRIQSSNPAEKYKLGLVLDKPVALLYPGIADAYLEAIAEPMDLGTIRRMLGAGRVPSAQAFADTVLLVFNNAIAFNAPAVASDPGLATIVDACKALRRMFRWWCLEAFPDLPPGDAEAGXXXXXXXXXXXXXXXXXXXXXXPEESLRLTRAERDRQRALRVAKVMALRADKINCKKLVHYFKQKRNSPIKHFIGRVPVEQLTDYKVSYMVKLRLCPCSVHPEQFQLLHQQAWH
Sbjct:    1 MHHPFLEEPPRIQSSNPAEKYKLGLVLDKPVALLYPGIADAYLEAIAEPMDLGTIRRMLGAGRVPSAQAFADTVLLVFNNAIAFNAPAVASDPGLATIVDACKALRRMFRWWCLEAFPDLPPGDAEAGXXXXXXXXXXXXXXXXXXXXXXPEESLRLTRAERDRQRALRVAKVMALRADKINCKKLVHYFKQKRNSPIKHFIGRVPVEQLTDYKVSYMVKLRLCPCSVHPEQFQLLHQQAWH 242
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BLAST of jgi.p|Trimin1|162454 vs. uniprot
Match: F0YH22_AURAN (Bromo domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YH22_AURAN)

HSP 1 Score: 67.8 bits (164), Expect = 2.380e-9
Identity = 39/96 (40.62%), Postives = 50/96 (52.08%), Query Frame = 1 
Query:   85 KPVALLYPGIADAYLEAIAEPMDLGTIRRMLGAGRVPSAQAFADTVLLVFNNAIAFNAPAVASDPG-----LATIVDACKALRRMFRWWCLEAFPD 357
            +P    +P I   YL  IA PMDLG + R L  GR  + QA  D ++LVF+NAIAFNA A     G      A +VD    ++ +   W LE F D
Sbjct:  513 RPAVEAFPLIRHEYLAKIARPMDLGQVHRQLNGGRYATFQAVVDDLVLVFDNAIAFNADAATGVNGPKDDLAAKMVDIASHMKHVIHHWALEFFKD 608
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BLAST of jgi.p|Trimin1|162454 vs. uniprot
Match: A0A1D9QNQ3_SCLS1 (Uncharacterized protein n=3 Tax=Sclerotinia TaxID=5179 RepID=A0A1D9QNQ3_SCLS1)

HSP 1 Score: 60.5 bits (145), Expect = 7.060e-7
Identity = 26/56 (46.43%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:   88 PVALLYPGIADAYLEAIAEPMDLGTIRRMLGAGRVPSAQAFADTVLLVFNNAIAFN 255
            PVA+L+PG ADAY + +   +DLGT+ + +  G  PS QA  D  +L++ NA+AFN
Sbjct:  367 PVAILWPGFADAYAQKVKNEVDLGTMEKKIKTGEYPSIQAIMDDAVLLYENAVAFN 422
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BLAST of jgi.p|Trimin1|162454 vs. uniprot
Match: A0A5M9J9B9_MONFR (Uncharacterized protein n=3 Tax=Monilinia TaxID=38447 RepID=A0A5M9J9B9_MONFR)

HSP 1 Score: 59.3 bits (142), Expect = 1.780e-6
Identity = 25/56 (44.64%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:   88 PVALLYPGIADAYLEAIAEPMDLGTIRRMLGAGRVPSAQAFADTVLLVFNNAIAFN 255
            PVA+L+PG A+AY + +   +DLGT+ + + +G  PS QA  D  +L++ NA+AFN
Sbjct:  554 PVAILWPGFAEAYAQKVENEIDLGTMEKKIKSGEYPSIQAIKDDAVLLYENAVAFN 609
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BLAST of jgi.p|Trimin1|162454 vs. uniprot
Match: A0A395IMK8_9HELO (Uncharacterized protein n=1 Tax=Monilinia fructigena TaxID=38457 RepID=A0A395IMK8_9HELO)

HSP 1 Score: 58.9 bits (141), Expect = 2.240e-6
Identity = 25/56 (44.64%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:   88 PVALLYPGIADAYLEAIAEPMDLGTIRRMLGAGRVPSAQAFADTVLLVFNNAIAFN 255
            PVA+L+PG A+AY + +   +DLGT+ + +  G  PS QA  D  +L++ NA+AFN
Sbjct:  297 PVAILWPGFAEAYAQKVENEIDLGTMEKKIKTGEYPSIQAIKDDAVLLYENAVAFN 352
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BLAST of jgi.p|Trimin1|162454 vs. uniprot
Match: A0A8A3PDV5_9HELO (Uncharacterized protein n=1 Tax=Monilinia vaccinii-corymbosi TaxID=61207 RepID=A0A8A3PDV5_9HELO)

HSP 1 Score: 58.2 bits (139), Expect = 4.200e-6
Identity = 25/56 (44.64%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:   88 PVALLYPGIADAYLEAIAEPMDLGTIRRMLGAGRVPSAQAFADTVLLVFNNAIAFN 255
            PVA+L+PG A+AY + +   +DLGT+ + +  G  PS QA  D  +L++ NA+AFN
Sbjct:  385 PVAILWPGFAEAYAQKVENEIDLGTMEKKIKNGEYPSIQAIKDDAVLLYENAVAFN 440
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BLAST of jgi.p|Trimin1|162454 vs. uniprot
Match: G2XSJ8_BOTF4 (Uncharacterized protein n=16 Tax=Sclerotiniaceae TaxID=28983 RepID=G2XSJ8_BOTF4)

HSP 1 Score: 56.2 bits (134), Expect = 1.840e-5
Identity = 26/56 (46.43%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:   88 PVALLYPGIADAYLEAIAEPMDLGTIRRMLGAGRVPSAQAFADTVLLVFNNAIAFN 255
            PVA+L+PG ADAY + +   +DL  + R +  G  PS QA  D  +L++ NAIAFN
Sbjct:  369 PVAILWPGFADAYAQKVKNEVDLSGMERKIKNGEYPSIQAIKDDAVLLYENAIAFN 424
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BLAST of jgi.p|Trimin1|162454 vs. uniprot
Match: A0A4D9D885_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D885_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.650e-5
Identity = 39/100 (39.00%), Postives = 53/100 (53.00%), Query Frame = 1 
Query:   82 DKPVALLYPGIADAYLEAIAEPMDLGTIRRMLGAGRVPSAQAFADTVLLVFNNAIAFNAPAVASDPGLATIVDACKALRRMFRWWCLEAFP---DLPPGD 372
            DKPV +++P +A AYL  IA+PMD  T+R  L A +  S + F   + L+F NAIAFN  A  + P    +V     LRR      LE  P   +  PG+
Sbjct:  666 DKPVVVMFPQVAAAYLARIAKPMDTSTLRLQLKAHQYGSPKEFLLDMDLIFANAIAFNDGA--ATPYEQEVVLVSSYLRRHLDRLALECLPLEEEYKPGE 763
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BLAST of jgi.p|Trimin1|162454 vs. uniprot
Match: W7TM86_9STRA (Protein polybromo-1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TM86_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 3.280e-5
Identity = 39/100 (39.00%), Postives = 53/100 (53.00%), Query Frame = 1 
Query:   82 DKPVALLYPGIADAYLEAIAEPMDLGTIRRMLGAGRVPSAQAFADTVLLVFNNAIAFNAPAVASDPGLATIVDACKALRRMFRWWCLEAFP---DLPPGD 372
            DKPV +++P +A AYL  IA+PMD  T+R  L A +  S + F   + L+F NAIAFN  A  + P    +V     LRR      LE  P   +  PG+
Sbjct:   26 DKPVVVMFPQVAAAYLARIAKPMDTSTLRVQLKAHQYGSPKEFLLDMDLIFANAIAFNDGA--ATPYEQEVVLVSNYLRRHLDRLALECLPLEEEYKPGE 123
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BLAST of jgi.p|Trimin1|162454 vs. uniprot
Match: M8CE84_AEGTA (Bromo domain-containing protein n=1 Tax=Aegilops tauschii TaxID=37682 RepID=M8CE84_AEGTA)

HSP 1 Score: 53.9 bits (128), Expect = 3.460e-5
Identity = 40/101 (39.60%), Postives = 47/101 (46.53%), Query Frame = 1 
Query:   70 GLVLDKPVALLYPGIADAYLEAIAEPMDLGTIRRMLGAGRVPSAQAFADTVLLVFNNAIAFNAPAVASDPGLATIVDACKALRRMFRWWC--LEAFPDLPP 366
            G V  KPV     G+ D Y   IAEPMDLGT+RR LG  R P+   FA  V   F+NA+ +N      + G      A K  R     W   L A P  PP
Sbjct:   29 GWVFAKPVDTYKLGLRD-YHSIIAEPMDLGTVRRRLGVRRYPNLLCFAKDVRRTFSNAMTYN------NKGDDVYESAAKLSRIFESGWVSILAALPSPPP 122
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|162454 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A836CI49_9STRA4.240e-153100.00Bromo domain-containing protein n=1 Tax=Tribonema ... [more]
F0YH22_AURAN2.380e-940.63Bromo domain-containing protein n=1 Tax=Aureococcu... [more]
A0A1D9QNQ3_SCLS17.060e-746.43Uncharacterized protein n=3 Tax=Sclerotinia TaxID=... [more]
A0A5M9J9B9_MONFR1.780e-644.64Uncharacterized protein n=3 Tax=Monilinia TaxID=38... [more]
A0A395IMK8_9HELO2.240e-644.64Uncharacterized protein n=1 Tax=Monilinia fructige... [more]
A0A8A3PDV5_9HELO4.200e-644.64Uncharacterized protein n=1 Tax=Monilinia vaccinii... [more]
G2XSJ8_BOTF41.840e-546.43Uncharacterized protein n=16 Tax=Sclerotiniaceae T... [more]
A0A4D9D885_9STRA2.650e-539.00Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TM86_9STRA3.280e-539.00Protein polybromo-1 n=1 Tax=Nannochloropsis gadita... [more]
M8CE84_AEGTA3.460e-539.60Bromo domain-containing protein n=1 Tax=Aegilops t... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_20contigContig_20:575001..575729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|162454|e_gw1.20.43.1
Descriptionacetylation-dependent protein binding
COG categoryBK
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5076@1|root,KOG1245@2759|Eukaryota,KOG1474@2759|Eukaryota
Evalue1.73e-06
Seed ortholog112098.XP_008612240.1
Hectar predicted targeting categoryother localisation
TranscriptId162776
TrackFilteredModels1
ProteinId162454
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162454gene_4108Tribonema minus UTEX_B_3156 geneContig_20 575001..575729 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4108_1exon_4108_1Tribonema minus UTEX_B_3156 exonContig_20 575001..575729 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4108CDS_4108Tribonema minus UTEX_B_3156 CDSContig_20 575001..575729 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162454Trimin1|162454|e_gw1.20.43.1Tribonema minus UTEX_B_3156 polypeptideContig_20 575001..575729 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4108 ID=mRNA_4108|Name=jgi.p|Trimin1|162454|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=729bp|location=Sequence derived from alignment at Contig_20:575001..575729+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCACCCGTTCCTGGAGGAGCCGCCGCGCATCCAGTCGAGCAACCC
CGCGGAGAAGTACAAGCTCGGGCTCGTGCTCGACAAGCCCGTCGCGCTGC
TGTACCCGGGCATCGCGGACGCGTACCTCGAGGCGATCGCGGAGCCGATG
GACCTTGGGACGATACGGCGCATGCTCGGCGCGGGGCGCGTGCCCAGCGC
TCAGGCCTTCGCGGACACCGTCCTCCTCGTCTTCAACAACGCCATCGCGT
TCAACGCGCCCGCCGTCGCGTCGGACCCCGGCCTCGCGACGATCGTCGAC
GCGTGCAAGGCGCTGCGGCGCATGTTCCGCTGGTGGTGCCTCGAGGCGTT
CCCCGACCTGCCGCCGGGGGACGCGGAGGCGGGGGGAGGGGGGGGAAAGG
GGGGCGCGCAGGGGGAGGGGGAGGGGGGCGGCGGCGGCGGCGGCGGCGGC
CCGGAGGAGTCGCTGCGGCTCACGCGCGCGGAGCGCGACCGGCAGCGCGC
GCTGCGCGTCGCCAAGGTGATGGCGCTGCGCGCGGACAAGATCAACTGCA
AGAAGCTCGTGCACTACTTCAAGCAGAAGCGCAACTCGCCCATCAAGCAC
TTCATCGGGCGCGTCCCCGTGGAGCAGCTCACGGACTACAAGGTGAGTTA
CATGGTGAAGTTGAGGTTGTGTCCCTGCAGCGTTCACCCCGAACAATTTC
AACTGCTACACCAGCAAGCATGGCACTGA
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protein sequence of jgi.p|Trimin1|162454

>Trimin1|162454|e_gw1.20.43.1 ID=Trimin1|162454|e_gw1.20.43.1|Name=jgi.p|Trimin1|162454|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=243bp
MHHPFLEEPPRIQSSNPAEKYKLGLVLDKPVALLYPGIADAYLEAIAEPM
DLGTIRRMLGAGRVPSAQAFADTVLLVFNNAIAFNAPAVASDPGLATIVD
ACKALRRMFRWWCLEAFPDLPPGDAEAGGGGGKGGAQGEGEGGGGGGGGG
PEESLRLTRAERDRQRALRVAKVMALRADKINCKKLVHYFKQKRNSPIKH
FIGRVPVEQLTDYKVSYMVKLRLCPCSVHPEQFQLLHQQAWH*
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mRNA from alignment at Contig_20:575001..575729+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4108 ID=mRNA_4108|Name=jgi.p|Trimin1|162454|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=729bp|location=Sequence derived from alignment at Contig_20:575001..575729+ (Tribonema minus UTEX_B_3156 )
ATGCACCACCCGTTCCTGGAGGAGCCGCCGCGCATCCAGTCGAGCAACCC
CGCGGAGAAGTACAAGCTCGGGCTCGTGCTCGACAAGCCCGTCGCGCTGC
TGTACCCGGGCATCGCGGACGCGTACCTCGAGGCGATCGCGGAGCCGATG
GACCTTGGGACGATACGGCGCATGCTCGGCGCGGGGCGCGTGCCCAGCGC
TCAGGCCTTCGCGGACACCGTCCTCCTCGTCTTCAACAACGCCATCGCGT
TCAACGCGCCCGCCGTCGCGTCGGACCCCGGCCTCGCGACGATCGTCGAC
GCGTGCAAGGCGCTGCGGCGCATGTTCCGCTGGTGGTGCCTCGAGGCGTT
CCCCGACCTGCCGCCGGGGGACGCGGAGGCGGGGGGAGGGGGGGGAAAGG
GGGGCGCGCAGGGGGAGGGGGAGGGGGGCGGCGGCGGCGGCGGCGGCGGC
CCGGAGGAGTCGCTGCGGCTCACGCGCGCGGAGCGCGACCGGCAGCGCGC
GCTGCGCGTCGCCAAGGTGATGGCGCTGCGCGCGGACAAGATCAACTGCA
AGAAGCTCGTGCACTACTTCAAGCAGAAGCGCAACTCGCCCATCAAGCAC
TTCATCGGGCGCGTCCCCGTGGAGCAGCTCACGGACTACAAGGTGAGTTA
CATGGTGAAGTTGAGGTTGTGTCCCTGCAGCGTTCACCCCGAACAATTTC
AACTGCTACACCAGCAAGCATGGCACTGA
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Coding sequence (CDS) from alignment at Contig_20:575001..575729+

>mRNA_4108 ID=mRNA_4108|Name=jgi.p|Trimin1|162454|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=729bp|location=Sequence derived from alignment at Contig_20:575001..575729+ (Tribonema minus UTEX_B_3156 )
ATGCACCACCCGTTCCTGGAGGAGCCGCCGCGCATCCAGTCGAGCAACCC
CGCGGAGAAGTACAAGCTCGGGCTCGTGCTCGACAAGCCCGTCGCGCTGC
TGTACCCGGGCATCGCGGACGCGTACCTCGAGGCGATCGCGGAGCCGATG
GACCTTGGGACGATACGGCGCATGCTCGGCGCGGGGCGCGTGCCCAGCGC
TCAGGCCTTCGCGGACACCGTCCTCCTCGTCTTCAACAACGCCATCGCGT
TCAACGCGCCCGCCGTCGCGTCGGACCCCGGCCTCGCGACGATCGTCGAC
GCGTGCAAGGCGCTGCGGCGCATGTTCCGCTGGTGGTGCCTCGAGGCGTT
CCCCGACCTGCCGCCGGGGGACGCGGAGGCGGGGGGAGGGGGGGGAAAGG
GGGGCGCGCAGGGGGAGGGGGAGGGGGGCGGCGGCGGCGGCGGCGGCGGC
CCGGAGGAGTCGCTGCGGCTCACGCGCGCGGAGCGCGACCGGCAGCGCGC
GCTGCGCGTCGCCAAGGTGATGGCGCTGCGCGCGGACAAGATCAACTGCA
AGAAGCTCGTGCACTACTTCAAGCAGAAGCGCAACTCGCCCATCAAGCAC
TTCATCGGGCGCGTCCCCGTGGAGCAGCTCACGGACTACAAGGTGAGTTA
CATGGTGAAGTTGAGGTTGTGTCCCTGCAGCGTTCACCCCGAACAATTTC
AACTGCTACACCAGCAAGCATGGCACTGA
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