mRNA_4069 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|131812
Unique NamemRNA_4069
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|131812 vs. uniprot
Match: A0A835Z4M7_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4M7_9STRA)

HSP 1 Score: 587 bits (1513), Expect = 1.680e-212
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 1
Query:    1 VAILDLMEPGHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFEVVMVMEFLDDEVKTNLDLIADGYYDDYLYRFIDEMIDDGNRAVTIRPLHEFNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFTSKRANVQFQLAYNCKNGQNDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEDVEWQSFEDMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKDDGEWDLNSEEQITAFSKGLLQYT 828
            VAILDLMEPGHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFEVVMVMEFLDDEVKTNLDLIADGYYDDYLYRFIDEMIDDGNRAVTIRPLHEFNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFTSKRANVQFQLAYNCKNGQNDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEDVEWQSFEDMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKDDGEWDLNSEEQITAFSKGLLQYT
Sbjct:    1 VAILDLMEPGHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFEVVMVMEFLDDEVKTNLDLIADGYYDDYLYRFIDEMIDDGNRAVTIRPLHEFNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFTSKRANVQFQLAYNCKNGQNDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEDVEWQSFEDMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKDDGEWDLNSEEQITAFSKGLLQYT 276          
BLAST of jgi.p|Trimin1|131812 vs. uniprot
Match: A0A835Z9M6_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9M6_9STRA)

HSP 1 Score: 574 bits (1480), Expect = 2.240e-205
Identity = 270/276 (97.83%), Postives = 273/276 (98.91%), Query Frame = 1
Query:    1 VAILDLMEPGHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFEVVMVMEFLDDEVKTNLDLIADGYYDDYLYRFIDEMIDDGNRAVTIRPLHEFNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFTSKRANVQFQLAYNCKNGQNDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEDVEWQSFEDMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKDDGEWDLNSEEQITAFSKGLLQYT 828
            VAILDLMEPGHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFEVVMVMEFLDDEVKTNLDLIADGYYDDYLYRFIDEMIDDGNRAVTIRPLHEFNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFTSKRANVQFQLAYNCK+G NDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYE VEWQSFE+MFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKDDGEWDLNSEEQI AFS+GLLQYT
Sbjct:   61 VAILDLMEPGHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFEVVMVMEFLDDEVKTNLDLIADGYYDDYLYRFIDEMIDDGNRAVTIRPLHEFNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFTSKRANVQFQLAYNCKSGLNDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEAVEWQSFEEMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKDDGEWDLNSEEQIAAFSEGLLQYT 336          
BLAST of jgi.p|Trimin1|131812 vs. uniprot
Match: A0A836CHF8_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHF8_9STRA)

HSP 1 Score: 541 bits (1393), Expect = 4.520e-193
Identity = 252/270 (93.33%), Postives = 260/270 (96.30%), Query Frame = 1
Query:   19 MEPGHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFEVVMVMEFLDDEVKTNLDLIADGYYDDYLYRFIDEMIDDGNRAVTIRPLHEFNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFTSKRANVQFQLAYNCKNGQNDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEDVEWQSFEDMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKDDGEWDLNSEEQITAFSKGLLQYT 828
            MEP HREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGF+VVMVMEFLDDEV+TNLDLIA GYYDDY+Y+FIDEMI DGNR VTIRPLHE NGDWYAWGTQAGGNNDIPTFIAAWQHIHRVF SKRANVQFQLAYNCKNGQNDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYE VEWQSFE+MFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNK+DG+WDLNS EQI AFS+GLL YT
Sbjct:    1 MEPPHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFQVVMVMEFLDDEVETNLDLIAQGYYDDYIYQFIDEMIADGNRLVTIRPLHEMNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFASKRANVQFQLAYNCKNGQNDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEAVEWQSFEEMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKNDGKWDLNSAEQIAAFSEGLLAYT 270          
BLAST of jgi.p|Trimin1|131812 vs. uniprot
Match: A0A836CJI7_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJI7_9STRA)

HSP 1 Score: 382 bits (981), Expect = 1.440e-126
Identity = 185/277 (66.79%), Postives = 210/277 (75.81%), Query Frame = 1
Query:    1 VAILDLMEPGHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFEVVMVMEFLDDEVKTNLDLIADGYYDDYLYRFIDEMIDDGNRAVTIRPLHEFNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFTSKRANVQFQLAYNCKNGQND-DTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEDVEWQSFEDMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKDDGEWDLNSEEQITAFSKGLLQYT 828
            VAILD MEP  R+ ELG AQFQ VVKF  ++ +RYP LVK YLDQG+EVVMV EFLDD + TNL  I DG YDDYLY+FIDE+ DDGNRAV IRP+HEFNGDWY WGT  GG N I  FI AWQHIH VFT K+ANV+FQLAYNC N Q+D  TPFTAWWPG +YVDMVVCSGYNRAGS     +EW +F+D++A AY QMAAL    PLG+GE S  +   YDKAQWIRDAFA   T F R+ Q TWFLQNKDDG WDLN+ ++I AF   L +YT
Sbjct:   37 VAILDEMEPNARQAELG-AQFQVVVKFQPVQQMRYPFLVKPYLDQGYEVVMVTEFLDDVLVTNLQEIGDGLYDDYLYQFIDELKDDGNRAVWIRPMHEFNGDWYPWGTYHGGTNTIDNFIRAWQHIHDVFTVKKANVKFQLAYNCDNAQDDVTTPFTAWWPGDEYVDMVVCSGYNRAGSDE-NHMEWLTFQDVYANAYNQMAALPGLKPLGVGEMSCNDFGDYDKAQWIRDAFADFDTTFTRVTQVTWFLQNKDDGRWDLNTPDEIQAFGDCLREYT 311          
BLAST of jgi.p|Trimin1|131812 vs. uniprot
Match: A0A835YWE9_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWE9_9STRA)

HSP 1 Score: 359 bits (921), Expect = 3.320e-121
Identity = 169/277 (61.01%), Postives = 208/277 (75.09%), Query Frame = 1
Query:    1 VAILDLMEPGHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFEVVMVMEFLDDEVKTNLDLIADGYYDDYLYRFIDEMIDDGNRAVTIRPLHEFNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFTSKRANVQFQLAYNCKNGQNDD-TPFTAWWPGAQYVDMVVCSGYNRAGSPGYEDVEWQSFEDMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKDDGEWDLNSEEQITAFSKGLLQYT 828
            V I D++EP +RE+EL  AQFQ V KFG IKT+RYP LVK YLDQGF+VV+V++FLD  + TNL  I DG YD YLY+F DE+I DGNR V +RP+HEFNGDWY WGT  GG N I  FI A++H+++V T+K AN++FQL YNC NG ND  TPF+AWWPG   VDMVVCS YNRAG+  +   +WQ++ D+F   Y QMAAL  + PLG+GE  TV +AG DKA WIRDAFA+  T +PR+ Q TWFL++KDDGEWDLNS ++I AF   LLQYT
Sbjct:   30 VGIADILEPVYREEELN-AQFQVVTKFGFIKTMRYPFLVKNYLDQGFKVVLVVQFLDT-LTTNLKQIGDGLYDKYLYKFADELIKDGNREVWVRPMHEFNGDWYPWGTYMGGTNTIQNFIRAYRHVYQVLTAKGANIKFQLGYNCVNGANDKKTPFSAWWPGDDVVDMVVCSAYNRAGTDQFH-TQWQTWPDVFQLGYDQMAALPTSAPLGVGEMGTVGMAGEDKAGWIRDAFAAFPTLYPRVEQITWFLEDKDDGEWDLNSADEIEAFRDSLLQYT 303          
BLAST of jgi.p|Trimin1|131812 vs. uniprot
Match: A0A836CGL5_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGL5_9STRA)

HSP 1 Score: 343 bits (880), Expect = 1.640e-114
Identity = 161/277 (58.12%), Postives = 196/277 (70.76%), Query Frame = 1
Query:    1 VAILDLMEPGHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFEVVMVMEFLDDEVKTNLDLIADGYYDDYLYRFIDEMIDDGNRAVTIRPLHEFNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFTSKRANVQFQLAYNCKNGQNDDT-PFTAWWPGAQYVDMVVCSGYNRAGSPGYEDVEWQSFEDMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKDDGEWDLNSEEQITAFSKGLLQYT 828
            + + D M P  R+ ELG A+FQ VVKF  ++ +RYP LVK +LD GF+ VMVMEFLD    TNL  IA+G YD YLY+F+DE++DDGNR V +RPLHEFNGDWY WGT  GG+N    F  AW+H+H + T+K AN++FQLAYNC NGQND T PF  WWPG QYVDMVVCSGYNRAGS   +  +W +F ++F  AY QM  L    PLG+GETS       DKAQWIRDAF      +PR+   TWFLQNK+DG WDLNS E+I AF + L++YT
Sbjct:   72 IGLSDNMLPVARQAELG-AKFQAVVKFQSVQKMRYPFLVKPHLDAGFQSVMVMEFLDATRHTNLKQIANGLYDKYLYKFVDELMDDGNREVWVRPLHEFNGDWYPWGTYRGGDNTKRMFKRAWRHVHWILTNKGANIKFQLAYNCVNGQNDQTTPFLDWWPGEQYVDMVVCSGYNRAGSDA-DHQQWLTFPEVFGAAYEQMLTLPGMKPLGVGETSCNNFEDNDKAQWIRDAFYDFVNTYPRIEHVTWFLQNKNDGRWDLNSPEEIAAFGESLIEYT 346          
BLAST of jgi.p|Trimin1|131812 vs. uniprot
Match: A0A835Z6S0_9STRA (GH26 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6S0_9STRA)

HSP 1 Score: 360 bits (923), Expect = 6.790e-111
Identity = 174/278 (62.59%), Postives = 205/278 (73.74%), Query Frame = 1
Query:    1 VAILDLMEPGHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFEVVMVMEFLDDEVKTNLDLIADGYYDDYLYRFIDEMIDDGNRAVTIRPLHEFNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFTSKRANVQFQLAYNCKNGQND-DTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEDVEWQSFEDMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKD-DGEWDLNSEEQITAFSKGLLQYT 828
            +AILD MEP  R+ ELG AQFQ VVKF  ++++RYP LVK YLDQGF+VVMV EFLD+E+ TNL  I  G YDDYLY+F+DE   DGN+ V IRP+HEFNGDWY WGT  GG N    FI AW+H+H VFT K+ANV+FQLAYNC NGQ+D  TPFT WWPG  YVDMVVCSGYNRAG+     +EW +F+D++  AY QM AL    PLG+GE S  +  GYDKAQWI DAF      +PR++Q TWFLQNK+ DG WDLNS EQI AF+ GL  YT
Sbjct: 1040 IAILDEMEPNARQAELG-AQFQVVVKFQPVQSMRYPFLVKPYLDQGFQVVMVTEFLDNELLTNLWQIGSGKYDDYLYQFMDEHKADGNQEVWIRPMHEFNGDWYPWGTYHGGFNTKKNFIRAWRHVHDVFTVKKANVKFQLAYNCDNGQDDVTTPFTDWWPGMNYVDMVVCSGYNRAGTDE-NHMEWLTFQDVYGAAYEQMLALPGYKPLGVGEMSCNDFEGYDKAQWITDAFYDFVNTYPRVKQVTWFLQNKEGDGRWDLNSPEQIAAFANGLKLYT 1315          
BLAST of jgi.p|Trimin1|131812 vs. uniprot
Match: A0A836CHJ5_9STRA (GH26 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHJ5_9STRA)

HSP 1 Score: 302 bits (773), Expect = 5.890e-96
Identity = 141/224 (62.95%), Postives = 166/224 (74.11%), Query Frame = 1
Query:    1 VAILDLMEPGHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFEVVMVMEFLDDEVKTNLDLIADGYYDDYLYRFIDEMIDDGNRAVTIRPLHEFNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFTSKRANVQFQLAYNCKNGQNDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEDVEWQSFEDMFAPAYAQMAALNPTVPLGIGETSTVELAGYDK 672
            + ILD MEP  RE ELG A+FQ VVKF  ++ +RYP LVK YLDQGF+VVMV EFLD  +KTNL  I DG YD YLY F+DE+++DGNR V +RP+HEFNGDWY WGT  GG N I  F  AW H+H VFT+K AN++FQLAYNC+NGQ  DTPF AWWPG  YVDMVVCSGYNRAGS   E + WQ+F++++ PAY QMA L    PLG+GETS  E    DK
Sbjct:  141 IGILDAMEPNAREAELG-AEFQVVVKFQPVQQMRYPFLVKPYLDQGFQVVMVTEFLDPTLKTNLKEIGDGLYDAYLYEFVDELMNDGNREVWVRPMHEFNGDWYPWGTYMGGTNTIANFKRAWLHVHDVFTNKGANIKFQLAYNCENGQGSDTPFKAWWPGENYVDMVVCSGYNRAGSDP-EHMVWQTFQEVYGPAYQQMADLPGRKPLGVGETSCTEFEDNDK 362          
BLAST of jgi.p|Trimin1|131812 vs. uniprot
Match: A0A835YXD8_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXD8_9STRA)

HSP 1 Score: 293 bits (749), Expect = 4.120e-93
Identity = 143/261 (54.79%), Postives = 172/261 (65.90%), Query Frame = 1
Query:   88 IKTLRYPNLVKGYLDQGFEVVMVMEFLDDEVKTNLDLIADGYYDDYLYRFIDEMIDDGNRAVTIRPLHEFNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFTSKRANVQFQ--------------LAYNCKNGQNDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEDVEWQSFEDMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKD-DGEWDLNSEEQITAFSKGLLQY 825
            ++  RYP LVK YLDQGF+VVMV +FLD+E+ TNL  I  G YD+YLY+F+DE   DGN+ V I P+HEFNGDWY WGT  GG N    F+ AW+H+H VFT K ANV FQ              L    + G+ D  PFT WWPG  YVDMVVCSGYNRAG+     +EW +F+D++  AY QM AL    PLG+GE S  +  GYDKAQWI DAF      +PR++QATW+LQNKD D  WDLNS EQI AF+ GL  Y
Sbjct:  123 VRNCRYPFLVKPYLDQGFQVVMVTKFLDNELLTNLWQIGSGKYDNYLYQFMDEHKADGNQEVWIMPMHEFNGDWYPWGTYHGGFNSKKNFVRAWRHVHDVFTVKEANVIFQRYAAFCSALSLSARLQLRQRAGRCDHAPFTDWWPGMNYVDMVVCSGYNRAGTDE-NHMEWLTFQDVYGAAYKQMLALPGYKPLGVGEMSCNDFEGYDKAQWITDAFYDFVNTYPRVKQATWYLQNKDGDCRWDLNSPEQIAAFANGLKLY 382          
BLAST of jgi.p|Trimin1|131812 vs. uniprot
Match: A0A835YVC0_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVC0_9STRA)

HSP 1 Score: 261 bits (667), Expect = 5.050e-84
Identity = 130/261 (49.81%), Postives = 167/261 (63.98%), Query Frame = 1
Query:   52 GAQFQTVVKFGEIKTL--RYPNLVKGYLDQGFEVVMVMEFLDDEVKTNLDLIADGYYDDYLYRFIDEMIDDGNRAVTIRPLHEFNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFTSKRANVQFQLAYNCKNGQNDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEDVEWQSFEDMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKDDGEWDLNSEEQITAFSKGLLQYT 828
            GA+FQTVVK+  +  L  +Y  LVK YLD G  VV+V EF+D     NL  I DG +D  L +FID+   DGNR V IRP+HEFNGDWY+WGT   GN+    F  A+QH+  VF ++ AN +FQL YNC N +ND T F+ WWPG   VDM++CSGYNRAG        WQSF D+++  Y +MAAL+   PLG+ ETS+     Y K QWI+DAF ++   F R+ Q  WFL NKD G W LNS+++  AF   + QY+
Sbjct:    1 GAKFQTVVKYQSVTGLPGQYKYLVKPYLDAGKSVVLVTEFIDGSY-ANLQAIGDGKFDWALNKFIDDWKADGNRQVWIRPMHEFNGDWYSWGTYRNGNSQA-LFKRAFQHVAYVFKNRGANAKFQLGYNCVNPRNDGTSFSNWWPGGDVVDMILCSGYNRAGLDSNHQ-SWQSFSDVYSSGYYKMAALDGGKPLGVAETSSTTWQSYSKPQWIKDAFNALVNKFTRVEQCNWFLINKD-GNWGLNSDDERHAFGDSINQYS 257          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|131812 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z4M7_9STRA1.680e-212100.00Glycoside hydrolase superfamily (Fragment) n=1 Tax... [more]
A0A835Z9M6_9STRA2.240e-20597.83Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A836CHF8_9STRA4.520e-19393.33Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A836CJI7_9STRA1.440e-12666.79Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835YWE9_9STRA3.320e-12161.01Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A836CGL5_9STRA1.640e-11458.12Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835Z6S0_9STRA6.790e-11162.59GH26 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A836CHJ5_9STRA5.890e-9662.95GH26 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835YXD8_9STRA4.120e-9354.79Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835YVC0_9STRA5.050e-8449.81Glycoside hydrolase superfamily (Fragment) n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_20contigContig_20:264165..265552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|131812|gw1.20.40.1
DescriptionGlycosyl hydrolase family 26
COG categoryG
Max annot lvl201174|Actinobacteria
EggNOG OGsCOG4124@1|root,COG4124@2|Bacteria,2GMW5@201174|Actinobacteria,4GCSP@85026|Gordoniaceae
Evalue8.03e-33
Seed ortholog2055.JNXA01000001_gene2114
Hectar predicted targeting categoryother localisation
TranscriptId132134
TrackFilteredModels1
ProteinId131812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131812gene_4069Tribonema minus UTEX_B_3156 geneContig_20 264165..265552 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4069_1exon_4069_1Tribonema minus UTEX_B_3156 exonContig_20 264165..264308 +
exon_4069_2exon_4069_2Tribonema minus UTEX_B_3156 exonContig_20 264496..265085 +
exon_4069_3exon_4069_3Tribonema minus UTEX_B_3156 exonContig_20 265459..265552 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4069CDS_4069Tribonema minus UTEX_B_3156 CDSContig_20 264165..264308 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131812Trimin1|131812|gw1.20.40.1Tribonema minus UTEX_B_3156 polypeptideContig_20 264165..265552 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4069 ID=mRNA_4069|Name=jgi.p|Trimin1|131812|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=828bp|location=Sequence derived from alignment at Contig_20:264165..265552+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTAGCGATTCTAGATCTCATGGAGCCAGGTCACCGCGAGCAGGAGCTAGG
CGGCGCACAGTTCCAGACCGTGGTCAAGTTTGGCGAGATCAAGACGCTGC
GGTACCCGAACCTCGTCAAGGGCTATCTAGACCAGGGCTTTGAGGTTGTC
ATGGTGATGGAGTTCCTGGACGACGAGGTGAAGACCAACCTGGACCTCAT
CGCAGATGGCTACTACGACGACTACCTCTACCGCTTCATCGACGAGATGA
TAGACGACGGCAACAGGGCCGTCACCATCCGCCCGCTCCACGAGTTCAAC
GGCGACTGGTACGCCTGGGGCACGCAGGCGGGCGGCAACAACGACATCCC
CACCTTCATCGCGGCGTGGCAGCACATCCACAGGGTCTTCACGTCCAAGC
GCGCCAACGTCCAGTTTCAGCTCGCCTACAACTGCAAGAACGGGCAGAAC
GACGACACGCCCTTCACGGCGTGGTGGCCGGGCGCGCAGTACGTGGACAT
GGTGGTCTGCAGCGGCTACAACCGTGCCGGCTCGCCCGGCTACGAGGACG
TAGAGTGGCAGTCGTTCGAGGACATGTTCGCGCCCGCCTACGCGCAGATG
GCAGCGCTCAACCCGACTGTGCCGCTAGGCATCGGCGAGACGAGCACCGT
GGAGCTGGCGGGCTACGACAAGGCGCAGTGGATCCGCGACGCGTTCGCCT
CCATGGCCACCGCCTTCCCACGCCTGCGCCAAGCCACCTGGTTCCTCCAG
AACAAGGACGACGGCGAGTGGGACCTCAACTCCGAGGAGCAGATCACCGC
CTTCAGCAAGGGCCTCCTGCAGTACACC
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protein sequence of jgi.p|Trimin1|131812

>Trimin1|131812|gw1.20.40.1 ID=Trimin1|131812|gw1.20.40.1|Name=jgi.p|Trimin1|131812|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=276bp
VAILDLMEPGHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFEVV
MVMEFLDDEVKTNLDLIADGYYDDYLYRFIDEMIDDGNRAVTIRPLHEFN
GDWYAWGTQAGGNNDIPTFIAAWQHIHRVFTSKRANVQFQLAYNCKNGQN
DDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEDVEWQSFEDMFAPAYAQM
AALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQ
NKDDGEWDLNSEEQITAFSKGLLQYT
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mRNA from alignment at Contig_20:264165..265552+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4069 ID=mRNA_4069|Name=jgi.p|Trimin1|131812|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1388bp|location=Sequence derived from alignment at Contig_20:264165..265552+ (Tribonema minus UTEX_B_3156 )
GTAGCGATTCTAGATCTCATGGAGCCAGGTCACCGCGAGCAGGAGCTAGG CGGCGCACAGTTCCAGACCGTGGTCAAGTTTGGCGAGATCAAGACGCTGC GGTACCCGAACCTCGTCAAGGGCTATCTAGACCAGGGCTTTGAGGTACGC GCTACTTGAGTGTTTTGCAGAGGGCTCGCAATCCACTGCACTGCATGAAG CACATTGCAGCACCCGCCAATGCACATGAGTACCTTGAACTGACACCCAG AGATGTCTGTGCAAGCACCGGCACCCCTTGCATATTGTTGGTATTGTGCT AACTGCACCACTTTTCTTTCCTCCTGTGCAGGTTGTCATGGTGATGGAGT TCCTGGACGACGAGGTGAAGACCAACCTGGACCTCATCGCAGATGGCTAC TACGACGACTACCTCTACCGCTTCATCGACGAGATGATAGACGACGGCAA CAGGGCCGTCACCATCCGCCCGCTCCACGAGTTCAACGGCGACTGGTACG CCTGGGGCACGCAGGCGGGCGGCAACAACGACATCCCCACCTTCATCGCG GCGTGGCAGCACATCCACAGGGTCTTCACGTCCAAGCGCGCCAACGTCCA GTTTCAGCTCGCCTACAACTGCAAGAACGGGCAGAACGACGACACGCCCT TCACGGCGTGGTGGCCGGGCGCGCAGTACGTGGACATGGTGGTCTGCAGC GGCTACAACCGTGCCGGCTCGCCCGGCTACGAGGACGTAGAGTGGCAGTC GTTCGAGGACATGTTCGCGCCCGCCTACGCGCAGATGGCAGCGCTCAACC CGACTGTGCCGCTAGGCATCGGCGAGACGAGCACCGTGGAGCTGGCGGGC TACGACAAGGCGCAGTGGATCCGCGACGCGTTCGCCTCCATGGCCACCGC CTTCCCACGCCTGCGCCAAGCGTGAGTGCCACCTCATGCTTCTATTGCCT TAGCATCAAACAGCGTGTTTCTGCCATGAAGCTATATGTGTGGCGACCAT CGTCCTGCGCGCACGCCAAGCGAGAGTCACAGGCAGCGTTGTTGGACCAA GCGTCTCGCGTGTCAGGTGTCTGCGTTGTGAGCTACCACAGCTGTGGAGC AGAGCTGCGGTAACCACAGTAGCCTCTGCGTGCGTGTACTGGTAGATGGC CTGTGAGACATTTACGTCTGTAACATCAGCATTTGAGACGGGTACATATG TCCTGCGAGTGCGGGCACAACACACACCAATGAGCTGTTGCCACGCAAAA GTCAGCCTCTGACCTCACCCCCCCCCTTATCCCCCCCCCAACAGCACCTG GTTCCTCCAGAACAAGGACGACGGCGAGTGGGACCTCAACTCCGAGGAGC AGATCACCGCCTTCAGCAAGGGCCTCCTGCAGTACACC
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Coding sequence (CDS) from alignment at Contig_20:264165..265552+

>mRNA_4069 ID=mRNA_4069|Name=jgi.p|Trimin1|131812|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=828bp|location=Sequence derived from alignment at Contig_20:264165..265552+ (Tribonema minus UTEX_B_3156 )
GTAGCGATTCTAGATCTCATGGAGCCAGGTCACCGCGAGCAGGAGCTAGG
CGGCGCACAGTTCCAGACCGTGGTCAAGTTTGGCGAGATCAAGACGCTGC
GGTACCCGAACCTCGTCAAGGGCTATCTAGACCAGGGCTTTGAGGTTGTC
ATGGTGATGGAGTTCCTGGACGACGAGGTGAAGACCAACCTGGACCTCAT
CGCAGATGGCTACTACGACGACTACCTCTACCGCTTCATCGACGAGATGA
TAGACGACGGCAACAGGGCCGTCACCATCCGCCCGCTCCACGAGTTCAAC
GGCGACTGGTACGCCTGGGGCACGCAGGCGGGCGGCAACAACGACATCCC
CACCTTCATCGCGGCGTGGCAGCACATCCACAGGGTCTTCACGTCCAAGC
GCGCCAACGTCCAGTTTCAGCTCGCCTACAACTGCAAGAACGGGCAGAAC
GACGACACGCCCTTCACGGCGTGGTGGCCGGGCGCGCAGTACGTGGACAT
GGTGGTCTGCAGCGGCTACAACCGTGCCGGCTCGCCCGGCTACGAGGACG
TAGAGTGGCAGTCGTTCGAGGACATGTTCGCGCCCGCCTACGCGCAGATG
GCAGCGCTCAACCCGACTGTGCCGCTAGGCATCGGCGAGACGAGCACCGT
GGAGCTGGCGGGCTACGACAAGGCGCAGTGGATCCGCGACGCGTTCGCCT
CCATGGCCACCGCCTTCCCACGCCTGCGCCAAGCCACCTGGTTCCTCCAG
AACAAGGACGACGGCGAGTGGGACCTCAACTCCGAGGAGCAGATCACCGC
CTTCAGCAAGGGCCTCCTGCAGTACACC
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