mRNA_4069 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|131812 vs. uniprot
Match: A0A835Z4M7_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4M7_9STRA) HSP 1 Score: 587 bits (1513), Expect = 1.680e-212 Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 1 Query: 1 VAILDLMEPGHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFEVVMVMEFLDDEVKTNLDLIADGYYDDYLYRFIDEMIDDGNRAVTIRPLHEFNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFTSKRANVQFQLAYNCKNGQNDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEDVEWQSFEDMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKDDGEWDLNSEEQITAFSKGLLQYT 828 VAILDLMEPGHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFEVVMVMEFLDDEVKTNLDLIADGYYDDYLYRFIDEMIDDGNRAVTIRPLHEFNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFTSKRANVQFQLAYNCKNGQNDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEDVEWQSFEDMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKDDGEWDLNSEEQITAFSKGLLQYT Sbjct: 1 VAILDLMEPGHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFEVVMVMEFLDDEVKTNLDLIADGYYDDYLYRFIDEMIDDGNRAVTIRPLHEFNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFTSKRANVQFQLAYNCKNGQNDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEDVEWQSFEDMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKDDGEWDLNSEEQITAFSKGLLQYT 276
BLAST of jgi.p|Trimin1|131812 vs. uniprot
Match: A0A835Z9M6_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9M6_9STRA) HSP 1 Score: 574 bits (1480), Expect = 2.240e-205 Identity = 270/276 (97.83%), Postives = 273/276 (98.91%), Query Frame = 1 Query: 1 VAILDLMEPGHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFEVVMVMEFLDDEVKTNLDLIADGYYDDYLYRFIDEMIDDGNRAVTIRPLHEFNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFTSKRANVQFQLAYNCKNGQNDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEDVEWQSFEDMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKDDGEWDLNSEEQITAFSKGLLQYT 828 VAILDLMEPGHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFEVVMVMEFLDDEVKTNLDLIADGYYDDYLYRFIDEMIDDGNRAVTIRPLHEFNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFTSKRANVQFQLAYNCK+G NDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYE VEWQSFE+MFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKDDGEWDLNSEEQI AFS+GLLQYT Sbjct: 61 VAILDLMEPGHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFEVVMVMEFLDDEVKTNLDLIADGYYDDYLYRFIDEMIDDGNRAVTIRPLHEFNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFTSKRANVQFQLAYNCKSGLNDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEAVEWQSFEEMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKDDGEWDLNSEEQIAAFSEGLLQYT 336
BLAST of jgi.p|Trimin1|131812 vs. uniprot
Match: A0A836CHF8_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHF8_9STRA) HSP 1 Score: 541 bits (1393), Expect = 4.520e-193 Identity = 252/270 (93.33%), Postives = 260/270 (96.30%), Query Frame = 1 Query: 19 MEPGHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFEVVMVMEFLDDEVKTNLDLIADGYYDDYLYRFIDEMIDDGNRAVTIRPLHEFNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFTSKRANVQFQLAYNCKNGQNDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEDVEWQSFEDMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKDDGEWDLNSEEQITAFSKGLLQYT 828 MEP HREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGF+VVMVMEFLDDEV+TNLDLIA GYYDDY+Y+FIDEMI DGNR VTIRPLHE NGDWYAWGTQAGGNNDIPTFIAAWQHIHRVF SKRANVQFQLAYNCKNGQNDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYE VEWQSFE+MFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNK+DG+WDLNS EQI AFS+GLL YT Sbjct: 1 MEPPHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFQVVMVMEFLDDEVETNLDLIAQGYYDDYIYQFIDEMIADGNRLVTIRPLHEMNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFASKRANVQFQLAYNCKNGQNDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEAVEWQSFEEMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKNDGKWDLNSAEQIAAFSEGLLAYT 270
BLAST of jgi.p|Trimin1|131812 vs. uniprot
Match: A0A836CJI7_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJI7_9STRA) HSP 1 Score: 382 bits (981), Expect = 1.440e-126 Identity = 185/277 (66.79%), Postives = 210/277 (75.81%), Query Frame = 1 Query: 1 VAILDLMEPGHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFEVVMVMEFLDDEVKTNLDLIADGYYDDYLYRFIDEMIDDGNRAVTIRPLHEFNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFTSKRANVQFQLAYNCKNGQND-DTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEDVEWQSFEDMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKDDGEWDLNSEEQITAFSKGLLQYT 828 VAILD MEP R+ ELG AQFQ VVKF ++ +RYP LVK YLDQG+EVVMV EFLDD + TNL I DG YDDYLY+FIDE+ DDGNRAV IRP+HEFNGDWY WGT GG N I FI AWQHIH VFT K+ANV+FQLAYNC N Q+D TPFTAWWPG +YVDMVVCSGYNRAGS +EW +F+D++A AY QMAAL PLG+GE S + YDKAQWIRDAFA T F R+ Q TWFLQNKDDG WDLN+ ++I AF L +YT Sbjct: 37 VAILDEMEPNARQAELG-AQFQVVVKFQPVQQMRYPFLVKPYLDQGYEVVMVTEFLDDVLVTNLQEIGDGLYDDYLYQFIDELKDDGNRAVWIRPMHEFNGDWYPWGTYHGGTNTIDNFIRAWQHIHDVFTVKKANVKFQLAYNCDNAQDDVTTPFTAWWPGDEYVDMVVCSGYNRAGSDE-NHMEWLTFQDVYANAYNQMAALPGLKPLGVGEMSCNDFGDYDKAQWIRDAFADFDTTFTRVTQVTWFLQNKDDGRWDLNTPDEIQAFGDCLREYT 311
BLAST of jgi.p|Trimin1|131812 vs. uniprot
Match: A0A835YWE9_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWE9_9STRA) HSP 1 Score: 359 bits (921), Expect = 3.320e-121 Identity = 169/277 (61.01%), Postives = 208/277 (75.09%), Query Frame = 1 Query: 1 VAILDLMEPGHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFEVVMVMEFLDDEVKTNLDLIADGYYDDYLYRFIDEMIDDGNRAVTIRPLHEFNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFTSKRANVQFQLAYNCKNGQNDD-TPFTAWWPGAQYVDMVVCSGYNRAGSPGYEDVEWQSFEDMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKDDGEWDLNSEEQITAFSKGLLQYT 828 V I D++EP +RE+EL AQFQ V KFG IKT+RYP LVK YLDQGF+VV+V++FLD + TNL I DG YD YLY+F DE+I DGNR V +RP+HEFNGDWY WGT GG N I FI A++H+++V T+K AN++FQL YNC NG ND TPF+AWWPG VDMVVCS YNRAG+ + +WQ++ D+F Y QMAAL + PLG+GE TV +AG DKA WIRDAFA+ T +PR+ Q TWFL++KDDGEWDLNS ++I AF LLQYT Sbjct: 30 VGIADILEPVYREEELN-AQFQVVTKFGFIKTMRYPFLVKNYLDQGFKVVLVVQFLDT-LTTNLKQIGDGLYDKYLYKFADELIKDGNREVWVRPMHEFNGDWYPWGTYMGGTNTIQNFIRAYRHVYQVLTAKGANIKFQLGYNCVNGANDKKTPFSAWWPGDDVVDMVVCSAYNRAGTDQFH-TQWQTWPDVFQLGYDQMAALPTSAPLGVGEMGTVGMAGEDKAGWIRDAFAAFPTLYPRVEQITWFLEDKDDGEWDLNSADEIEAFRDSLLQYT 303
BLAST of jgi.p|Trimin1|131812 vs. uniprot
Match: A0A836CGL5_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGL5_9STRA) HSP 1 Score: 343 bits (880), Expect = 1.640e-114 Identity = 161/277 (58.12%), Postives = 196/277 (70.76%), Query Frame = 1 Query: 1 VAILDLMEPGHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFEVVMVMEFLDDEVKTNLDLIADGYYDDYLYRFIDEMIDDGNRAVTIRPLHEFNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFTSKRANVQFQLAYNCKNGQNDDT-PFTAWWPGAQYVDMVVCSGYNRAGSPGYEDVEWQSFEDMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKDDGEWDLNSEEQITAFSKGLLQYT 828 + + D M P R+ ELG A+FQ VVKF ++ +RYP LVK +LD GF+ VMVMEFLD TNL IA+G YD YLY+F+DE++DDGNR V +RPLHEFNGDWY WGT GG+N F AW+H+H + T+K AN++FQLAYNC NGQND T PF WWPG QYVDMVVCSGYNRAGS + +W +F ++F AY QM L PLG+GETS DKAQWIRDAF +PR+ TWFLQNK+DG WDLNS E+I AF + L++YT Sbjct: 72 IGLSDNMLPVARQAELG-AKFQAVVKFQSVQKMRYPFLVKPHLDAGFQSVMVMEFLDATRHTNLKQIANGLYDKYLYKFVDELMDDGNREVWVRPLHEFNGDWYPWGTYRGGDNTKRMFKRAWRHVHWILTNKGANIKFQLAYNCVNGQNDQTTPFLDWWPGEQYVDMVVCSGYNRAGSDA-DHQQWLTFPEVFGAAYEQMLTLPGMKPLGVGETSCNNFEDNDKAQWIRDAFYDFVNTYPRIEHVTWFLQNKNDGRWDLNSPEEIAAFGESLIEYT 346
BLAST of jgi.p|Trimin1|131812 vs. uniprot
Match: A0A835Z6S0_9STRA (GH26 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6S0_9STRA) HSP 1 Score: 360 bits (923), Expect = 6.790e-111 Identity = 174/278 (62.59%), Postives = 205/278 (73.74%), Query Frame = 1 Query: 1 VAILDLMEPGHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFEVVMVMEFLDDEVKTNLDLIADGYYDDYLYRFIDEMIDDGNRAVTIRPLHEFNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFTSKRANVQFQLAYNCKNGQND-DTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEDVEWQSFEDMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKD-DGEWDLNSEEQITAFSKGLLQYT 828 +AILD MEP R+ ELG AQFQ VVKF ++++RYP LVK YLDQGF+VVMV EFLD+E+ TNL I G YDDYLY+F+DE DGN+ V IRP+HEFNGDWY WGT GG N FI AW+H+H VFT K+ANV+FQLAYNC NGQ+D TPFT WWPG YVDMVVCSGYNRAG+ +EW +F+D++ AY QM AL PLG+GE S + GYDKAQWI DAF +PR++Q TWFLQNK+ DG WDLNS EQI AF+ GL YT Sbjct: 1040 IAILDEMEPNARQAELG-AQFQVVVKFQPVQSMRYPFLVKPYLDQGFQVVMVTEFLDNELLTNLWQIGSGKYDDYLYQFMDEHKADGNQEVWIRPMHEFNGDWYPWGTYHGGFNTKKNFIRAWRHVHDVFTVKKANVKFQLAYNCDNGQDDVTTPFTDWWPGMNYVDMVVCSGYNRAGTDE-NHMEWLTFQDVYGAAYEQMLALPGYKPLGVGEMSCNDFEGYDKAQWITDAFYDFVNTYPRVKQVTWFLQNKEGDGRWDLNSPEQIAAFANGLKLYT 1315
BLAST of jgi.p|Trimin1|131812 vs. uniprot
Match: A0A836CHJ5_9STRA (GH26 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHJ5_9STRA) HSP 1 Score: 302 bits (773), Expect = 5.890e-96 Identity = 141/224 (62.95%), Postives = 166/224 (74.11%), Query Frame = 1 Query: 1 VAILDLMEPGHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFEVVMVMEFLDDEVKTNLDLIADGYYDDYLYRFIDEMIDDGNRAVTIRPLHEFNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFTSKRANVQFQLAYNCKNGQNDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEDVEWQSFEDMFAPAYAQMAALNPTVPLGIGETSTVELAGYDK 672 + ILD MEP RE ELG A+FQ VVKF ++ +RYP LVK YLDQGF+VVMV EFLD +KTNL I DG YD YLY F+DE+++DGNR V +RP+HEFNGDWY WGT GG N I F AW H+H VFT+K AN++FQLAYNC+NGQ DTPF AWWPG YVDMVVCSGYNRAGS E + WQ+F++++ PAY QMA L PLG+GETS E DK Sbjct: 141 IGILDAMEPNAREAELG-AEFQVVVKFQPVQQMRYPFLVKPYLDQGFQVVMVTEFLDPTLKTNLKEIGDGLYDAYLYEFVDELMNDGNREVWVRPMHEFNGDWYPWGTYMGGTNTIANFKRAWLHVHDVFTNKGANIKFQLAYNCENGQGSDTPFKAWWPGENYVDMVVCSGYNRAGSDP-EHMVWQTFQEVYGPAYQQMADLPGRKPLGVGETSCTEFEDNDK 362
BLAST of jgi.p|Trimin1|131812 vs. uniprot
Match: A0A835YXD8_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXD8_9STRA) HSP 1 Score: 293 bits (749), Expect = 4.120e-93 Identity = 143/261 (54.79%), Postives = 172/261 (65.90%), Query Frame = 1 Query: 88 IKTLRYPNLVKGYLDQGFEVVMVMEFLDDEVKTNLDLIADGYYDDYLYRFIDEMIDDGNRAVTIRPLHEFNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFTSKRANVQFQ--------------LAYNCKNGQNDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEDVEWQSFEDMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKD-DGEWDLNSEEQITAFSKGLLQY 825 ++ RYP LVK YLDQGF+VVMV +FLD+E+ TNL I G YD+YLY+F+DE DGN+ V I P+HEFNGDWY WGT GG N F+ AW+H+H VFT K ANV FQ L + G+ D PFT WWPG YVDMVVCSGYNRAG+ +EW +F+D++ AY QM AL PLG+GE S + GYDKAQWI DAF +PR++QATW+LQNKD D WDLNS EQI AF+ GL Y Sbjct: 123 VRNCRYPFLVKPYLDQGFQVVMVTKFLDNELLTNLWQIGSGKYDNYLYQFMDEHKADGNQEVWIMPMHEFNGDWYPWGTYHGGFNSKKNFVRAWRHVHDVFTVKEANVIFQRYAAFCSALSLSARLQLRQRAGRCDHAPFTDWWPGMNYVDMVVCSGYNRAGTDE-NHMEWLTFQDVYGAAYKQMLALPGYKPLGVGEMSCNDFEGYDKAQWITDAFYDFVNTYPRVKQATWYLQNKDGDCRWDLNSPEQIAAFANGLKLY 382
BLAST of jgi.p|Trimin1|131812 vs. uniprot
Match: A0A835YVC0_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVC0_9STRA) HSP 1 Score: 261 bits (667), Expect = 5.050e-84 Identity = 130/261 (49.81%), Postives = 167/261 (63.98%), Query Frame = 1 Query: 52 GAQFQTVVKFGEIKTL--RYPNLVKGYLDQGFEVVMVMEFLDDEVKTNLDLIADGYYDDYLYRFIDEMIDDGNRAVTIRPLHEFNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFTSKRANVQFQLAYNCKNGQNDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEDVEWQSFEDMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKDDGEWDLNSEEQITAFSKGLLQYT 828 GA+FQTVVK+ + L +Y LVK YLD G VV+V EF+D NL I DG +D L +FID+ DGNR V IRP+HEFNGDWY+WGT GN+ F A+QH+ VF ++ AN +FQL YNC N +ND T F+ WWPG VDM++CSGYNRAG WQSF D+++ Y +MAAL+ PLG+ ETS+ Y K QWI+DAF ++ F R+ Q WFL NKD G W LNS+++ AF + QY+ Sbjct: 1 GAKFQTVVKYQSVTGLPGQYKYLVKPYLDAGKSVVLVTEFIDGSY-ANLQAIGDGKFDWALNKFIDDWKADGNRQVWIRPMHEFNGDWYSWGTYRNGNSQA-LFKRAFQHVAYVFKNRGANAKFQLGYNCVNPRNDGTSFSNWWPGGDVVDMILCSGYNRAGLDSNHQ-SWQSFSDVYSSGYYKMAALDGGKPLGVAETSSTTWQSYSKPQWIKDAFNALVNKFTRVEQCNWFLINKD-GNWGLNSDDERHAFGDSINQYS 257 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|131812 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4069 ID=mRNA_4069|Name=jgi.p|Trimin1|131812|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=828bp|location=Sequence derived from alignment at Contig_20:264165..265552+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTAGCGATTCTAGATCTCATGGAGCCAGGTCACCGCGAGCAGGAGCTAGGback to top protein sequence of jgi.p|Trimin1|131812 >Trimin1|131812|gw1.20.40.1 ID=Trimin1|131812|gw1.20.40.1|Name=jgi.p|Trimin1|131812|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=276bp VAILDLMEPGHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFEVVback to top mRNA from alignment at Contig_20:264165..265552+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_4069 ID=mRNA_4069|Name=jgi.p|Trimin1|131812|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1388bp|location=Sequence derived from alignment at Contig_20:264165..265552+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_20:264165..265552+ >mRNA_4069 ID=mRNA_4069|Name=jgi.p|Trimin1|131812|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=828bp|location=Sequence derived from alignment at Contig_20:264165..265552+ (Tribonema minus UTEX_B_3156 )back to top |