mRNA_4068 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|162319
Unique NamemRNA_4068
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|162319 vs. uniprot
Match: A0A835Z432_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z432_9STRA)

HSP 1 Score: 207 bits (527), Expect = 1.040e-67
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 
Query:    1 IDLREFLLACSQFIDVDPSIKTQFVFNLYDEDRSGFLSTAELIEVLKANHMQSAAAVAKKAATIMRQADADGSGTLSYEDFVTVVRRFPNICFPNVRRQGEIVAAAE 321
            IDLREFLLACSQFIDVDPSIKTQFVFNLYDEDRSGFLSTAELIEVLKANHMQSAAAVAKKAATIMRQADADGSGTLSYEDFVTVVRRFPNICFPNVRRQGEIVAAAE
Sbjct:    1 IDLREFLLACSQFIDVDPSIKTQFVFNLYDEDRSGFLSTAELIEVLKANHMQSAAAVAKKAATIMRQADADGSGTLSYEDFVTVVRRFPNICFPNVRRQGEIVAAAE 107
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BLAST of jgi.p|Trimin1|162319 vs. uniprot
Match: A0A485KUT7_9STRA (Aste57867_12159 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KUT7_9STRA)

HSP 1 Score: 100 bits (248), Expect = 2.710e-22
Identity = 46/95 (48.42%), Postives = 67/95 (70.53%), Query Frame = 1 
Query:    4 DLREFLLACSQFIDVDPSIKTQFVFNLYDEDRSGFLSTAELIEVLKANHMQSAAAVAKKAATIMRQADADGSGTLSYEDFVTVVRRFPNICFPNV 288
            D+RE LL  S  +DVD  +K QFVF +YD+D +G+++  ELI +LKA HM +AA V KKA TI++QAD+DG   +   +F  + ++FPNI FP++
Sbjct:  925 DIREILLGMSNLLDVDKVMKAQFVFEIYDDDHNGYITEDELINILKATHMTTAANVMKKAKTILKQADSDGDNKIDLAEFHVISKKFPNIIFPHI 1019
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BLAST of jgi.p|Trimin1|162319 vs. uniprot
Match: A0A7S3M2M7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M2M7_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 6.930e-22
Identity = 46/96 (47.92%), Postives = 71/96 (73.96%), Query Frame = 1 
Query:    1 IDLREFLLACSQFIDVDPSIKTQFVFNLYDEDRSGFLSTAELIEVLKANHMQSAAAVAKKAATIMRQADADGSGTLSYEDFVTVVRRFPNICFPNV 288
            +D+REFLL+   F+DVD  ++ +F F ++DE ++GF++ AE+ E+LK NHM SAA+V +KA TIM+QA+A+  G ++  +FV V ++FPNI  P V
Sbjct: 1071 MDIREFLLSMMNFVDVDKEVRIRFSFEMFDELKTGFIAQAEVEEILKGNHMLSAASVRRKADTIMKQANANAKGAITINEFVVVSKKFPNILLPAV 1166
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BLAST of jgi.p|Trimin1|162319 vs. uniprot
Match: D8LE37_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE37_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 9.390e-22
Identity = 49/101 (48.51%), Postives = 67/101 (66.34%), Query Frame = 1 
Query:    1 IDLREFLLACSQFIDVDPSIKTQFVFNLYDEDRSGFLSTAELIEVLKANHMQSAAAVAKKAATIMRQADADGSGTLSYEDFVTVVRRFPNICFPNVRRQGE 303
            +D+REF L  + F++     +TQF+F L+D+DRSGFLS  EL+ VLKANH+ +A AVAKKA TIM+QADA          F+ V ++FPN+ FP   +  E
Sbjct:  903 VDIREFFLGMANFVEWSLEPRTQFIFTLFDDDRSGFLSMDELVAVLKANHLATAKAVAKKAQTIMKQADAXXXXXXXXXXFLVVAKKFPNLLFPAKPKTNE 1003
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BLAST of jgi.p|Trimin1|162319 vs. uniprot
Match: F0VYX0_9STRA (Calcineurin subunit B putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VYX0_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.690e-21
Identity = 51/95 (53.68%), Postives = 67/95 (70.53%), Query Frame = 1 
Query:    1 IDLREFLLACSQFIDVDPSIKTQFVFNLYDEDRSGFLSTAELIEVLKANHMQ-SAAAVAKKAATIMRQADADGSGTLSYEDFVTVVRRFPNICFP 282
            IDLREF++A S F   +   K +F F L+DED +G +S  EL+++LKANHM  S A VA+KA TIM Q D DG G +S+++FV V R+FPNI FP
Sbjct:  573 IDLREFMIALSNFSGTNKEEKLKFAFLLFDEDGNGEISRQELVQILKANHMAGSEAEVARKADTIMSQGDKDGDGVISFQEFVIVSRKFPNILFP 667
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BLAST of jgi.p|Trimin1|162319 vs. uniprot
Match: A0A482SBT0_9ARCH (EF-hand domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SBT0_9ARCH)

HSP 1 Score: 90.5 bits (223), Expect = 2.730e-20
Identity = 41/94 (43.62%), Postives = 67/94 (71.28%), Query Frame = 1 
Query:    1 IDLREFLLACSQFIDVDPSIKTQFVFNLYDEDRSGFLSTAELIEVLKANHMQSAAAVAKKAATIMRQADADGSGTLSYEDFVTVVRRFPNICFP 282
            +DLREFLL+   ++ VD   + +F F ++DE+++GF++  E+ E+L+ NHM S  AV KKA T+M+QA +D +G ++  +FV V ++FPN+ FP
Sbjct:   95 MDLREFLLSMMNYVSVDREERIKFSFEMFDENKTGFITQKEVEEILRGNHMLSLQAVRKKAETVMKQAHSDRAGYVNMREFVVVSKKFPNVLFP 188
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BLAST of jgi.p|Trimin1|162319 vs. uniprot
Match: A0A0P1AVI5_PLAHL (Calcineurin subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AVI5_PLAHL)

HSP 1 Score: 93.2 bits (230), Expect = 7.180e-20
Identity = 47/95 (49.47%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:    1 IDLREFLLACSQFIDVDPSIKTQFVFNLYDEDRSGFLSTAELIEVLKANHMQSAAA-VAKKAATIMRQADADGSGTLSYEDFVTVVRRFPNICFP 282
            ID+REF++A S F   D   K +F F ++DED +G ++  ELI++LKANHM S+   VA+KA TIM Q D DG G +S+++F  V ++FPNI FP
Sbjct:  691 IDVREFMIALSNFTGADKEDKLKFAFLVFDEDGNGVITRQELIKILKANHMASSEGEVARKADTIMSQGDKDGDGVISFDEFSIVSKKFPNILFP 785
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BLAST of jgi.p|Trimin1|162319 vs. uniprot
Match: A0A6G0WZW8_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WZW8_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.360e-19
Identity = 38/95 (40.00%), Postives = 68/95 (71.58%), Query Frame = 1 
Query:    4 DLREFLLACSQFIDVDPSIKTQFVFNLYDEDRSGFLSTAELIEVLKANHMQSAAAVAKKAATIMRQADADGSGTLSYEDFVTVVRRFPNICFPNV 288
            D++E LL  +  +++D ++K QF F ++D+D +GF++  EL+ +L+A HM +AA V  KA T+++QADADG   ++ E+F  + ++FPN+ FP++
Sbjct:  929 DMQELLLGMANLLEIDKTMKAQFCFEIFDDDHNGFITEDELVNILRATHMTTAANVQMKAQTVLKQADADGDHKINLEEFHVMAKKFPNLIFPHI 1023
[Close]
BLAST of jgi.p|Trimin1|162319 vs. uniprot
Match: A0A7S3M8S8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M8S8_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.800e-19
Identity = 47/95 (49.47%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:    1 IDLREFLLACSQFIDVDPSIKTQFVFNLYDEDRSGFLSTAELIEVLKANHMQSA-AAVAKKAATIMRQADADGSGTLSYEDFVTVVRRFPNICFP 282
            ID REFL+A S +       K +F F  +DED +G ++ AEL+++LK+NHM S  A VA+KA TIM QAD DG G +++++FV V ++FPNI FP
Sbjct:  347 IDAREFLIAVSNYTGAGKEDKLKFAFMSFDEDGNGVITKAELLKILKSNHMASHDAEVARKADTIMAQADKDGDGVITFDEFVIVSKKFPNILFP 441
[Close]
BLAST of jgi.p|Trimin1|162319 vs. uniprot
Match: W4GRQ0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GRQ0_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.820e-19
Identity = 46/95 (48.42%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:    1 IDLREFLLACSQFIDVDPSIKTQFVFNLYDEDRSGFLSTAELIEVLKANHMQS-AAAVAKKAATIMRQADADGSGTLSYEDFVTVVRRFPNICFP 282
            ID+REFL+A S F   +   K +F F ++D+D +G LS  EL+++LKANHM S  + VA+KA TIM Q D DG G +++++F  V ++FPNI FP
Sbjct:  662 IDVREFLIALSNFCGAEKDEKLKFAFMVFDDDGNGVLSKMELMKILKANHMASNESEVARKADTIMSQGDKDGDGVITFDEFAVVSKKFPNILFP 756
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|162319 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z432_9STRA1.040e-67100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A485KUT7_9STRA2.710e-2248.42Aste57867_12159 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S3M2M7_9STRA6.930e-2247.92Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
D8LE37_ECTSI9.390e-2248.51Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
F0VYX0_9STRA1.690e-2153.68Calcineurin subunit B putative n=1 Tax=Albugo laib... [more]
A0A482SBT0_9ARCH2.730e-2043.62EF-hand domain-containing protein n=1 Tax=archaeon... [more]
A0A0P1AVI5_PLAHL7.180e-2049.47Calcineurin subunit n=1 Tax=Plasmopara halstedii T... [more]
A0A6G0WZW8_9STRA1.360e-1940.00Uncharacterized protein n=2 Tax=Aphanomyces euteic... [more]
A0A7S3M8S8_9STRA1.800e-1949.47Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
W4GRQ0_9STRA1.820e-1948.42Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_20contigContig_20:262448..263569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|162319|e_gw1.20.32.1
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
KEGG koko:K02183,ko:K19909,ko:K19938
DescriptionCalcium-binding protein
COG categoryDTZ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5126@1|root,KOG0027@2759|Eukaryota
Evalue1.54e-22
Seed ortholog2880.D8LE37
Hectar predicted targeting categoryother localisation
TranscriptId162641
TrackFilteredModels1
ProteinId162319
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162319gene_4068Tribonema minus UTEX_B_3156 geneContig_20 262448..263569 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4068_1exon_4068_1Tribonema minus UTEX_B_3156 exonContig_20 262448..262548 +
exon_4068_2exon_4068_2Tribonema minus UTEX_B_3156 exonContig_20 263347..263569 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4068CDS_4068Tribonema minus UTEX_B_3156 CDSContig_20 262448..262548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162319Trimin1|162319|e_gw1.20.32.1Tribonema minus UTEX_B_3156 polypeptideContig_20 262448..263569 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4068 ID=mRNA_4068|Name=jgi.p|Trimin1|162319|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=324bp|location=Sequence derived from alignment at Contig_20:262448..263569+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATCGACCTGCGCGAGTTCCTGCTGGCGTGCAGCCAGTTCATAGACGTCGA
CCCCTCGATCAAGACGCAGTTCGTCTTCAACCTGTACGACGAGGACCGCA
GCGGCTTCCTGAGCACCGCGGAGCTCATCGAGGTCCTCAAGGCCAACCAC
ATGCAGAGCGCGGCGGCGGTCGCCAAGAAGGCGGCGACGATCATGCGCCA
GGCCGACGCCGACGGCAGCGGCACGCTCAGCTACGAGGATTTTGTGACCG
TTGTTCGTCGTTTCCCCAACATCTGCTTCCCGAACGTGCGGCGGCAGGGC
GAGATCGTCGCCGCCGCCGAGTAG
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protein sequence of jgi.p|Trimin1|162319

>Trimin1|162319|e_gw1.20.32.1 ID=Trimin1|162319|e_gw1.20.32.1|Name=jgi.p|Trimin1|162319|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=108bp
IDLREFLLACSQFIDVDPSIKTQFVFNLYDEDRSGFLSTAELIEVLKANH
MQSAAAVAKKAATIMRQADADGSGTLSYEDFVTVVRRFPNICFPNVRRQG
EIVAAAE*
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mRNA from alignment at Contig_20:262448..263569+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4068 ID=mRNA_4068|Name=jgi.p|Trimin1|162319|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1122bp|location=Sequence derived from alignment at Contig_20:262448..263569+ (Tribonema minus UTEX_B_3156 )
ATCGACCTGCGCGAGTTCCTGCTGGCGTGCAGCCAGTTCATAGACGTCGA
CCCCTCGATCAAGACGCAGTTCGTCTTCAACCTGTACGACGAGGACCGCA
GGTAAGGGCGGCGCGTTGCTTTGCAGCGCACAACGCTCAGCTTGGGCCGT
GATGGTCAGCTTTGGTTAGCGTTAGGACAGGTAGAGTTGAGGTTAGGGTT
ACGGTTGGGGGGAACGGCCAGGGTGAGACACTTGCGTGAAGTGCGCGTTG
TCGGGGTCAGCGCTGTGGCCGCGAGCAGCGGTAGTCAAGGTGGGACAGGC
CAGCCGTGTTGTGCTGTTACGTTTGCGCTTTTGTAATCTGCGGACTTACT
TGTGGTAAAGGCCCGCTGCCACAGTGAAATGCAACTGGAGCACGAGAATA
GCCTTTTGATGCTTGTGGCCCTACGAGATGCGGAACATTCATATAACTGT
ACAAATCTACGAATCAGAATTCCACTATGTGCCATGCCTCGAATGTCGGC
TGTCATGTGCTGGTGCCACCAATCAAGCATCGACATGCCGTGGACGGCAT
CATCCATCGCGGCGGCAAGCTCAATTGTGATTTGGTGTAGCAGACATCAT
GCTGCCGCAGGGGCATGCAAACAGTGTGCAGGCAGTATTGTGTCACCTAC
TGCACATGTGAGGCACCTATGCGTTTCTCAGCCTGCTGAGCCAGGCTGCG
CGACAAGCGCACGCATCAGCGAAGCAAACGCAACCACCTGCTTCCTTCTG
CCCCCCAACACTTACAACAGCCGGTCCGTGCGCACCACACATTGCCTTCA
AACCCAAACCCCACCCCTCACCCTGAACGTTGCATCGCGGCCGTCACGTT
CACTTGTTGCATCTGCTGCTGCGCCGCGCAACTGTGCTCGCGCCGACAGC
GGCTTCCTGAGCACCGCGGAGCTCATCGAGGTCCTCAAGGCCAACCACAT
GCAGAGCGCGGCGGCGGTCGCCAAGAAGGCGGCGACGATCATGCGCCAGG
CCGACGCCGACGGCAGCGGCACGCTCAGCTACGAGGATTTTGTGACCGTT
GTTCGTCGTTTCCCCAACATCTGCTTCCCGAACGTGCGGCGGCAGGGCGA
GATCGTCGCCGCCGCCGAGTAG
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Coding sequence (CDS) from alignment at Contig_20:262448..263569+

>mRNA_4068 ID=mRNA_4068|Name=jgi.p|Trimin1|162319|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=324bp|location=Sequence derived from alignment at Contig_20:262448..263569+ (Tribonema minus UTEX_B_3156 )
ATCGACCTGCGCGAGTTCCTGCTGGCGTGCAGCCAGTTCATAGACGTCGA
CCCCTCGATCAAGACGCAGTTCGTCTTCAACCTGTACGACGAGGACCGCA
GCGGCTTCCTGAGCACCGCGGAGCTCATCGAGGTCCTCAAGGCCAACCAC
ATGCAGAGCGCGGCGGCGGTCGCCAAGAAGGCGGCGACGATCATGCGCCA
GGCCGACGCCGACGGCAGCGGCACGCTCAGCTACGAGGATTTTGTGACCG
TTGTTCGTCGTTTCCCCAACATCTGCTTCCCGAACGTGCGGCGGCAGGGC
GAGATCGTCGCCGCCGCCGAGTAG
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