mRNA_4067 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|132596
Unique NamemRNA_4067
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|132596 vs. uniprot
Match: A0A836CHF2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHF2_9STRA)

HSP 1 Score: 114 bits (285), Expect = 2.600e-32
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 EFSEEEISSAFRFIDLDRNGFIGAAEIRHILICMGELITDEEVDAMIALVDFDGDGQV 174
            EFSEEEISSAFRFIDLDRNGFIGAAEIRHILICMGELITDEEVDAMIALVDFDGDGQV
Sbjct:    1 EFSEEEISSAFRFIDLDRNGFIGAAEIRHILICMGELITDEEVDAMIALVDFDGDGQV 58
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BLAST of jgi.p|Trimin1|132596 vs. uniprot
Match: A0A482SA88_9ARCH (EF-hand domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SA88_9ARCH)

HSP 1 Score: 98.2 bits (243), Expect = 4.780e-25
Identity = 46/58 (79.31%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:    1 EFSEEEISSAFRFIDLDRNGFIGAAEIRHILICMGELITDEEVDAMIALVDFDGDGQV 174
            EFSEEEI++AFRFIDLD N F+GAAEIRHIL+CMGE+ITDEE+D MI +VD DGDGQV
Sbjct:   47 EFSEEEITAAFRFIDLDHNNFVGAAEIRHILVCMGEMITDEEIDMMINMVDVDGDGQV 104
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BLAST of jgi.p|Trimin1|132596 vs. uniprot
Match: F0XXY1_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XXY1_AURAN)

HSP 1 Score: 94.7 bits (234), Expect = 4.330e-24
Identity = 44/58 (75.86%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:    1 EFSEEEISSAFRFIDLDRNGFIGAAEIRHILICMGELITDEEVDAMIALVDFDGDGQV 174
            EFS+ EI +AF+FIDLD+NG+IGA+EIRH+L+CMGELITDEEVD MI +VD DGDGQV
Sbjct:   28 EFSDAEIEAAFKFIDLDKNGYIGASEIRHVLVCMGELITDEEVDMMIKMVDNDGDGQV 85
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BLAST of jgi.p|Trimin1|132596 vs. uniprot
Match: A0A7S2FW97_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FW97_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 8.780e-23
Identity = 48/58 (82.76%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:    1 EFSEEEISSAFRFIDLDRNGFIGAAEIRHILICMGELITDEEVDAMIALVDFDGDGQV 174
            EFS+ EI +AFRFIDLD+NGFIGAAEIRHILICMGELITDEEVD MI ++D DGDGQV
Sbjct:  490 EFSDAEIEAAFRFIDLDKNGFIGAAEIRHILICMGELITDEEVDMMIGMIDGDGDGQV 547
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BLAST of jgi.p|Trimin1|132596 vs. uniprot
Match: A0A6A5ASX8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ASX8_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.260e-22
Identity = 44/58 (75.86%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:    1 EFSEEEISSAFRFIDLDRNGFIGAAEIRHILICMGELITDEEVDAMIALVDFDGDGQV 174
            EFSE+++  AF+FIDLD+N FIGAAEIRHILICMGELITD EVD M+ +VD DGDGQV
Sbjct:   50 EFSEDDVLGAFKFIDLDKNTFIGAAEIRHILICMGELITDAEVDEMVRMVDRDGDGQV 107
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BLAST of jgi.p|Trimin1|132596 vs. uniprot
Match: A0A2D4BY33_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BY33_PYTIN)

HSP 1 Score: 95.9 bits (237), Expect = 1.060e-21
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:    1 EFSEEEISSAFRFIDLDRNGFIGAAEIRHILICMGELITDEEVDAMIALVDFDGDGQV 174
            EFSEEEI  AFRF+DLD+N FIGAAE+RH+LICMGELITDEE+D MI L D DGDGQV
Sbjct:  535 EFSEEEILGAFRFLDLDKNNFIGAAELRHLLICMGELITDEEIDEMIKLCDVDGDGQV 592
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BLAST of jgi.p|Trimin1|132596 vs. uniprot
Match: K3WZ00_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZ00_GLOUD)

HSP 1 Score: 95.9 bits (237), Expect = 1.060e-21
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:    1 EFSEEEISSAFRFIDLDRNGFIGAAEIRHILICMGELITDEEVDAMIALVDFDGDGQV 174
            EFSEEEI  AF+FIDLDRN F+GAAE+RH+LICMGELITDEE+D MI L D DGDGQV
Sbjct:  425 EFSEEEILGAFKFIDLDRNNFVGAAELRHLLICMGELITDEEIDMMIQLCDTDGDGQV 482
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BLAST of jgi.p|Trimin1|132596 vs. uniprot
Match: A0A2D4BKB2_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKB2_PYTIN)

HSP 1 Score: 95.9 bits (237), Expect = 1.060e-21
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:    1 EFSEEEISSAFRFIDLDRNGFIGAAEIRHILICMGELITDEEVDAMIALVDFDGDGQV 174
            EFSEEEI  AFRF+DLD+N FIGAAE+RH+LICMGELITDEE+D MI L D DGDGQV
Sbjct:  535 EFSEEEILGAFRFLDLDKNNFIGAAELRHLLICMGELITDEEIDEMIKLCDVDGDGQV 592
[Close]
BLAST of jgi.p|Trimin1|132596 vs. uniprot
Match: A0A5D6XRG4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XRG4_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.980e-21
Identity = 45/58 (77.59%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:    1 EFSEEEISSAFRFIDLDRNGFIGAAEIRHILICMGELITDEEVDAMIALVDFDGDGQV 174
            EF+EEEI  AFRF+DLDRN FIGAAE+RH+LICMGELITDEE+D M+ L D DGDGQV
Sbjct:  537 EFTEEEILGAFRFLDLDRNNFIGAAELRHLLICMGELITDEEIDMMVKLCDTDGDGQV 594
[Close]
BLAST of jgi.p|Trimin1|132596 vs. uniprot
Match: A0A1V9YHN9_9STRA (Calmodulin n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YHN9_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 2.240e-21
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:    1 EFSEEEISSAFRFIDLDRNGFIGAAEIRHILICMGELITDEEVDAMIALVDFDGDGQV 174
            EFSE EI SAF+FIDLD+N FIGAAEIRHILICMGELITD EVD M+ +VD DGDGQ+
Sbjct:   50 EFSEAEILSAFKFIDLDKNTFIGAAEIRHILICMGELITDAEVDMMVKMVDRDGDGQI 107
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|132596 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CHF2_9STRA2.600e-32100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A482SA88_9ARCH4.780e-2579.31EF-hand domain-containing protein (Fragment) n=1 T... [more]
F0XXY1_AURAN4.330e-2475.86Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S2FW97_9STRA8.780e-2382.76Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6A5ASX8_9STRA2.260e-2275.86Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A2D4BY33_PYTIN1.060e-2179.31Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
K3WZ00_GLOUD1.060e-2179.31Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2D4BKB2_PYTIN1.060e-2179.31Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A5D6XRG4_9STRA1.980e-2177.59Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A1V9YHN9_9STRA2.240e-2179.31Calmodulin n=1 Tax=Thraustotheca clavata TaxID=745... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_20contigContig_20:256778..256951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|132596|gw1.20.44.1
DescriptionCalmodulin. Source PGD
COG categoryT
Max annot lvl121069|Pythiales
EggNOG OGsCOG5126@1|root,KOG1028@1|root,KOG0027@2759|Eukaryota,KOG1028@2759|Eukaryota,1MCPY@121069|Pythiales
Evalue9.36e-23
Seed ortholog115417.EPrPW00000021859
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId132918
TrackFilteredModels1
ProteinId132596
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132596gene_4067Tribonema minus UTEX_B_3156 geneContig_20 256778..256951 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4067_1exon_4067_1Tribonema minus UTEX_B_3156 exonContig_20 256778..256951 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4067CDS_4067Tribonema minus UTEX_B_3156 CDSContig_20 256778..256951 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132596Trimin1|132596|gw1.20.44.1Tribonema minus UTEX_B_3156 polypeptideContig_20 256778..256951 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4067 ID=mRNA_4067|Name=jgi.p|Trimin1|132596|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=174bp|location=Sequence derived from alignment at Contig_20:256778..256951+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GAGTTCAGCGAGGAGGAGATTTCCAGCGCGTTCCGCTTCATCGACCTCGA
CCGCAACGGCTTCATCGGCGCCGCGGAGATCCGCCACATCCTCATCTGCA
TGGGCGAGCTCATCACGGACGAGGAGGTGGACGCCATGATCGCGCTCGTC
GACTTTGACGGGGACGGGCAGGTG
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protein sequence of jgi.p|Trimin1|132596

>Trimin1|132596|gw1.20.44.1 ID=Trimin1|132596|gw1.20.44.1|Name=jgi.p|Trimin1|132596|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=58bp
EFSEEEISSAFRFIDLDRNGFIGAAEIRHILICMGELITDEEVDAMIALV
DFDGDGQV
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mRNA from alignment at Contig_20:256778..256951+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4067 ID=mRNA_4067|Name=jgi.p|Trimin1|132596|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=174bp|location=Sequence derived from alignment at Contig_20:256778..256951+ (Tribonema minus UTEX_B_3156 )
GAGTTCAGCGAGGAGGAGATTTCCAGCGCGTTCCGCTTCATCGACCTCGA
CCGCAACGGCTTCATCGGCGCCGCGGAGATCCGCCACATCCTCATCTGCA
TGGGCGAGCTCATCACGGACGAGGAGGTGGACGCCATGATCGCGCTCGTC
GACTTTGACGGGGACGGGCAGGTG
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Coding sequence (CDS) from alignment at Contig_20:256778..256951+

>mRNA_4067 ID=mRNA_4067|Name=jgi.p|Trimin1|132596|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=174bp|location=Sequence derived from alignment at Contig_20:256778..256951+ (Tribonema minus UTEX_B_3156 )
GAGTTCAGCGAGGAGGAGATTTCCAGCGCGTTCCGCTTCATCGACCTCGA
CCGCAACGGCTTCATCGGCGCCGCGGAGATCCGCCACATCCTCATCTGCA
TGGGCGAGCTCATCACGGACGAGGAGGTGGACGCCATGATCGCGCTCGTC
GACTTTGACGGGGACGGGCAGGTG
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