mRNA_4062 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|348126 vs. uniprot
Match: A0A835Z5I0_9STRA (ThiJ/PfpI family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5I0_9STRA) HSP 1 Score: 472 bits (1215), Expect = 2.260e-167 Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 2 Query: 17 MGKKILVVVTSVERYPPDLVKRPTGLWLGECVHFVKKVEEAGYEVDYVSPMGGYTPIDPHSLEMADDTDWEWYGNKPFMARLGAVKTPAQVSAADYAAIYYTGGHGTVWDFPDNKELQALARSIYEAGGYVTSVCHGACALLNIALSDGASLISGKRVTGFSNEEEKQVQLDKYMPFLTEDELKARGATYEKASDAWAPFALSDARVITGQNPASGGAVAETLLKELGGK 706 MGKKILVVVTSVERYPPDLVKRPTGLWLGECVHFVKKVEEAGYEVDYVSPMGGYTPIDPHSLEMADDTDWEWYGNKPFMARLGAVKTPAQVSAADYAAIYYTGGHGTVWDFPDNKELQALARSIYEAGGYVTSVCHGACALLNIALSDGASLISGKRVTGFSNEEEKQVQLDKYMPFLTEDELKARGATYEKASDAWAPFALSDARVITGQNPASGGAVAETLLKELGGK Sbjct: 1 MGKKILVVVTSVERYPPDLVKRPTGLWLGECVHFVKKVEEAGYEVDYVSPMGGYTPIDPHSLEMADDTDWEWYGNKPFMARLGAVKTPAQVSAADYAAIYYTGGHGTVWDFPDNKELQALARSIYEAGGYVTSVCHGACALLNIALSDGASLISGKRVTGFSNEEEKQVQLDKYMPFLTEDELKARGATYEKASDAWAPFALSDARVITGQNPASGGAVAETLLKELGGK 230
BLAST of jgi.p|Trimin1|348126 vs. uniprot
Match: A0A1I4SX50_9PROT (Putative intracellular protease/amidase n=2 Tax=Nitrosomonas TaxID=914 RepID=A0A1I4SX50_9PROT) HSP 1 Score: 338 bits (867), Expect = 2.060e-114 Identity = 161/227 (70.93%), Postives = 184/227 (81.06%), Query Frame = 2 Query: 17 MGKKILVVVTSVERYPPDLVKRPTGLWLGECVHFVKKVEEAGYEVDYVSPMGGYTPIDPHSLEMADDTDWEWYGNKPFMARLGAVKTPAQVSAADYAAIYYTGGHGTVWDFPDNKELQALARSIYEAGGYVTSVCHGACALLNIALSDGASLISGKRVTGFSNEEEKQVQLDKYMPFLTEDELKARGATYEKASDAWAPFALSDARVITGQNPASGGAVAETLLKEL 697 MGKKILVV+TSVE+YP +KR TGLWLGE VHFVKKVEEAGY+VDY+SP GGYTPIDPHSL MADDTDW WY K FM RLG+ P++++ DY AIY+TGGHG VWDFPDN LQA+ R IYE GGYV+SVCHGA LLNI LSDGA L+ GK+VTGFSNEEEK V+LDKY+PFLTE EL ARGA Y+KA + W FA+ D R+I+GQNPAS G VAE LLK + Sbjct: 1 MGKKILVVLTSVEKYPN--LKRATGLWLGEAVHFVKKVEEAGYKVDYISPQGGYTPIDPHSLVMADDTDWAWYHKKAFMNRLGSTLKPSEINPDDYVAIYFTGGHGVVWDFPDNAALQAIGRKIYEKGGYVSSVCHGAAGLLNIKLSDGALLVKGKKVTGFSNEEEKLVELDKYVPFLTETELVARGAIYQKADEPWTAFAVEDHRLISGQNPASSGVVAELLLKAI 225
BLAST of jgi.p|Trimin1|348126 vs. uniprot
Match: A0A399WNZ5_9BACT (Type 1 glutamine amidotransferase domain-containing protein n=1 Tax=Candidatus Brocadia sp. TaxID=2172549 RepID=A0A399WNZ5_9BACT) HSP 1 Score: 332 bits (851), Expect = 5.580e-112 Identity = 158/227 (69.60%), Postives = 182/227 (80.18%), Query Frame = 2 Query: 17 MGKKILVVVTSVERYPPDLVKRPTGLWLGECVHFVKKVEEAGYEVDYVSPMGGYTPIDPHSLEMADDTDWEWYGNKPFMARLGAVKTPAQVSAADYAAIYYTGGHGTVWDFPDNKELQALARSIYEAGGYVTSVCHGACALLNIALSDGASLISGKRVTGFSNEEEKQVQLDKYMPFLTEDELKARGATYEKASDAWAPFALSDARVITGQNPASGGAVAETLLKEL 697 M KKILVV+TS+E+YP +KR TGLWLGE VHFVKKVE AGY+VDYVSP GGYTPIDPHSL MADDTDW WY K FM RLGA P++V DY AIY+ GGHG +WDFPDN+ELQA++R IYE+GGYV+SVCHGA LLNI +SDG L+ GK+VTGFSNEEEK +LDKY+PFLTE EL RGA Y KA + WA +A+ D R+I+GQNPASG AVAE LLK L Sbjct: 1 MRKKILVVLTSIEKYPN--LKRATGLWLGEAVHFVKKVEAAGYQVDYVSPRGGYTPIDPHSLAMADDTDWTWYQTKEFMNRLGATLKPSEVKPDDYVAIYFAGGHGVIWDFPDNEELQAISRRIYESGGYVSSVCHGAAGLLNIKMSDGTLLVKGKKVTGFSNEEEKLAELDKYVPFLTETELVNRGAIYHKADEPWAAYAVEDGRLISGQNPASGDAVAELLLKAL 225
BLAST of jgi.p|Trimin1|348126 vs. uniprot
Match: A0A7W1UEN2_9BACT (Type 1 glutamine amidotransferase domain-containing protein n=1 Tax=Nitrospirales bacterium TaxID=2358460 RepID=A0A7W1UEN2_9BACT) HSP 1 Score: 331 bits (849), Expect = 1.120e-111 Identity = 161/230 (70.00%), Postives = 182/230 (79.13%), Query Frame = 2 Query: 17 MGKKILVVVTSVERYPPDLVKRPTGLWLGECVHFVKKVEEAGYEVDYVSPMGGYTPIDPHSLEMADDTDWEWYGNKPFMARLGAVKTPAQVSAADYAAIYYTGGHGTVWDFPDNKELQALARSIYEAGGYVTSVCHGACALLNIALSDGASLISGKRVTGFSNEEEKQVQLDKYMPFLTEDELKARGATYEKASDAWAPFALSDARVITGQNPASGGAVAETLLKELGGK 706 M KKILVV+TSV +YP + R TGLWL E VHFVKKV+EAGYEVDYVSP GGYTPIDPHSL AD TDWEWY K FM RLG P+QV+ DY AIY+TGGHG +WDFP+N+ELQA+++ IYE GG+V+SVCHGA LLNI LSDG LI GK+VTGFSNEEEK V+LDK +PFLTE EL RGA Y+KA WAPFAL + RVITGQNPASGGAVA+ LL LG K Sbjct: 1 MSKKILVVLTSVAKYPN--LNRATGLWLAEAVHFVKKVQEAGYEVDYVSPQGGYTPIDPHSLAQADATDWEWYQKKEFMNRLGTTLKPSQVNPDDYVAIYFTGGHGVIWDFPENQELQAISQKIYEKGGFVSSVCHGALGLLNIQLSDGTLLIKGKKVTGFSNEEEKLVELDKVVPFLTETELVKRGAVYKKADQPWAPFALENTRVITGQNPASGGAVADRLLTALGEK 228
BLAST of jgi.p|Trimin1|348126 vs. uniprot
Match: A0A1J0ES63_9PSED (Type 1 glutamine amidotransferase domain-containing protein n=1 Tax=Pseudomonas frederiksbergensis TaxID=104087 RepID=A0A1J0ES63_9PSED) HSP 1 Score: 331 bits (848), Expect = 1.440e-111 Identity = 157/227 (69.16%), Postives = 183/227 (80.62%), Query Frame = 2 Query: 17 MGKKILVVVTSVERYPPDLVKRPTGLWLGECVHFVKKVEEAGYEVDYVSPMGGYTPIDPHSLEMADDTDWEWYGNKPFMARLGAVKTPAQVSAADYAAIYYTGGHGTVWDFPDNKELQALARSIYEAGGYVTSVCHGACALLNIALSDGASLISGKRVTGFSNEEEKQVQLDKYMPFLTEDELKARGATYEKASDAWAPFALSDARVITGQNPASGGAVAETLLKEL 697 M KKILVV+TSVE+YP + R TGLWLGE VHFV KVE AGYEVDYVSP GGYTPIDPHSL MA DWEWY +K FM RLG+ P++V+ ADY A+YY GGHG +WDFP+N ELQAL+R IYE+GG V+SVCHGA ALLNI LSDG L+ GK VTGFSN EEK V+LDKY+PFLTEDE+ ARG Y+KA + WAPFA++D R+ITGQNPASGGAVA+ +L + Sbjct: 1 MSKKILVVLTSVEKYPN--LDRATGLWLGEAVHFVHKVEAAGYEVDYVSPQGGYTPIDPHSLAMAIPIDWEWYHDKAFMTRLGSTLKPSEVNPADYVAVYYAGGHGVIWDFPENAELQALSRKIYESGGVVSSVCHGAAALLNIKLSDGTLLLKGKEVTGFSNTEEKLVELDKYVPFLTEDEMVARGGLYKKADEPWAPFAIADGRLITGQNPASGGAVADLVLAAI 225
BLAST of jgi.p|Trimin1|348126 vs. uniprot
Match: A0A532EQH5_9BACT (Type 1 glutamine amidotransferase domain-containing protein n=1 Tax=Nitrospira sp. TaxID=70125 RepID=A0A532EQH5_9BACT) HSP 1 Score: 331 bits (848), Expect = 1.590e-111 Identity = 155/227 (68.28%), Postives = 183/227 (80.62%), Query Frame = 2 Query: 17 MGKKILVVVTSVERYPPDLVKRPTGLWLGECVHFVKKVEEAGYEVDYVSPMGGYTPIDPHSLEMADDTDWEWYGNKPFMARLGAVKTPAQVSAADYAAIYYTGGHGTVWDFPDNKELQALARSIYEAGGYVTSVCHGACALLNIALSDGASLISGKRVTGFSNEEEKQVQLDKYMPFLTEDELKARGATYEKASDAWAPFALSDARVITGQNPASGGAVAETLLKEL 697 M KKILVV+TSVE+YP + R TGLWLGE VHFVKKVE AGY+VDYVSP GGYTPIDPHSL MA+ DWEWY K FM RLG P++V+ ++Y A+YY GGHG +WDFP+NK LQ ++R +YE GGYV+SVCHGA LLNI +SDG LI GK+VTGFSN+EEK +LDK++PFLTE E+ ARGA Y+KA AWAPFA++D RVITGQNPASGGAVA+ LL EL Sbjct: 1 MNKKILVVLTSVEKYPN--LNRATGLWLGEAVHFVKKVEAAGYQVDYVSPRGGYTPIDPHSLAMAEPVDWEWYQKKEFMNRLGNTLKPSEVNPSEYVAVYYAGGHGVIWDFPENKPLQTISRKVYEGGGYVSSVCHGAAGLLNIKMSDGLPLIKGKQVTGFSNDEEKLAELDKFVPFLTETEMVARGAIYKKADKAWAPFAVADGRVITGQNPASGGAVADLLLAEL 225
BLAST of jgi.p|Trimin1|348126 vs. uniprot
Match: A0A7G2JJV5_9GAMM (Molecular chaperone Hsp31 and glyoxalase 3 n=7 Tax=cellular organisms TaxID=131567 RepID=A0A7G2JJV5_9GAMM) HSP 1 Score: 330 bits (846), Expect = 3.100e-111 Identity = 161/230 (70.00%), Postives = 186/230 (80.87%), Query Frame = 2 Query: 17 MGKKILVVVTSVERYPPDLVKRPTGLWLGECVHFVKKVEEAGYEVDYVSPMGGYTPIDPHSLEMADDTDWEWYGNKPFMARLGAVKTPAQVSAADYAAIYYTGGHGTVWDFPDNKELQALARSIYEAGGYVTSVCHGACALLNIALSDGASLISGKRVTGFSNEEEKQVQLDKYMPFLTEDELKARGATYEKASDAWAPFALSDARVITGQNPASGGAVAETLLKELGGK 706 M KKILVV+TS+ +YP + R TGLWLGE VHFVKKVE AGYEV+YVSP+GGYTPIDPHSL MAD TDWEWY NK FM RLGA P+QV+AADY AIYY GGHG +WDF DN LQ L++SIYE+GG V+SVCHGA LLNI L++G LISGK+VTGFSNEEEK +LDK +P+LTE ELK RGA Y+KA++ WA FALSD RV TGQNPASG AVA+ +L+ L GK Sbjct: 1 MKKKILVVLTSIAKYPS--IDRATGLWLGEAVHFVKKVEAAGYEVEYVSPLGGYTPIDPHSLAMADATDWEWYQNKSFMNRLGATLKPSQVNAADYGAIYYAGGHGVIWDFLDNPALQTLSQSIYESGGVVSSVCHGAIGLLNIKLANGDYLISGKKVTGFSNEEEKLAELDKLVPYLTETELKKRGAIYQKAAEPWAEFALSDQRVATGQNPASGAAVADEVLRLLAGK 228
BLAST of jgi.p|Trimin1|348126 vs. uniprot
Match: A0A1H9DJV1_9PROT (Putative intracellular protease/amidase n=6 Tax=Nitrosomonas TaxID=914 RepID=A0A1H9DJV1_9PROT) HSP 1 Score: 330 bits (846), Expect = 3.440e-111 Identity = 157/227 (69.16%), Postives = 185/227 (81.50%), Query Frame = 2 Query: 17 MGKKILVVVTSVERYPPDLVKRPTGLWLGECVHFVKKVEEAGYEVDYVSPMGGYTPIDPHSLEMADDTDWEWYGNKPFMARLGAVKTPAQVSAADYAAIYYTGGHGTVWDFPDNKELQALARSIYEAGGYVTSVCHGACALLNIALSDGASLISGKRVTGFSNEEEKQVQLDKYMPFLTEDELKARGATYEKASDAWAPFALSDARVITGQNPASGGAVAETLLKEL 697 M KKILVV+TSVE+YP +KR TGLWL E VHFVKKVEEAGYEVDYVSP GGYTPIDPHSL MADDTDW+WY +K FM RLGA P ++ DY AIY++GGHG +WDFPDN+ LQ+++R IYE GGYV+SVCHGA LLNI LSDG+ L+ GK+VTGFSNEEEK +LD+Y+PFLTE EL RGA Y+KA++ WA FA+ D R+I+GQNPASG AVAE L+K L Sbjct: 2 MRKKILVVLTSVEKYPN--LKRATGLWLAEAVHFVKKVEEAGYEVDYVSPAGGYTPIDPHSLAMADDTDWDWYHDKAFMNRLGATLKPIDINPDDYIAIYFSGGHGVIWDFPDNEALQSISRKIYENGGYVSSVCHGAAGLLNIKLSDGSLLVKGKKVTGFSNEEEKLAELDQYVPFLTETELINRGAVYQKATEPWAVFAVQDERLISGQNPASGAAVAELLIKTL 226
BLAST of jgi.p|Trimin1|348126 vs. uniprot
Match: A0A2T6GTL6_9PSED (Type 1 glutamine amidotransferase domain-containing protein n=33 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A2T6GTL6_9PSED) HSP 1 Score: 330 bits (845), Expect = 3.960e-111 Identity = 158/227 (69.60%), Postives = 182/227 (80.18%), Query Frame = 2 Query: 17 MGKKILVVVTSVERYPPDLVKRPTGLWLGECVHFVKKVEEAGYEVDYVSPMGGYTPIDPHSLEMADDTDWEWYGNKPFMARLGAVKTPAQVSAADYAAIYYTGGHGTVWDFPDNKELQALARSIYEAGGYVTSVCHGACALLNIALSDGASLISGKRVTGFSNEEEKQVQLDKYMPFLTEDELKARGATYEKASDAWAPFALSDARVITGQNPASGGAVAETLLKEL 697 M KKILVV+TSV +YP + R TGLWLGE VHFVKKV+ AG+EVDYVSP GGY PIDPHSL MADD DW+WY + FM+RLGA P+QV A DY AIYY GGHG +WDFPDN ELQAL+R IYE GGYV+SVCHGA LLNI LSDG+ LI+GK+VTGFSNEEEK +LD Y+P+LTE EL RGA Y+KA++ WAPFA+ D RVI+GQNPASGG VA+ LL L Sbjct: 1 MSKKILVVLTSVAKYPN--LNRATGLWLGEAVHFVKKVQAAGFEVDYVSPKGGYVPIDPHSLAMADDIDWQWYQDSAFMSRLGATLQPSQVQARDYVAIYYAGGHGVLWDFPDNPELQALSRDIYEQGGYVSSVCHGAVGLLNIRLSDGSLLIAGKQVTGFSNEEEKLAELDAYVPYLTETELLKRGALYQKAAEPWAPFAVQDQRVISGQNPASGGPVADLLLAHL 225
BLAST of jgi.p|Trimin1|348126 vs. uniprot
Match: A0A5E7R048_PSEFL (Molecular chaperone Hsp31 and glyoxalase 3 n=2 Tax=Pseudomonas TaxID=286 RepID=A0A5E7R048_PSEFL) HSP 1 Score: 329 bits (843), Expect = 8.550e-111 Identity = 156/227 (68.72%), Postives = 186/227 (81.94%), Query Frame = 2 Query: 17 MGKKILVVVTSVERYPPDLVKRPTGLWLGECVHFVKKVEEAGYEVDYVSPMGGYTPIDPHSLEMADDTDWEWYGNKPFMARLGAVKTPAQVSAADYAAIYYTGGHGTVWDFPDNKELQALARSIYEAGGYVTSVCHGACALLNIALSDGASLISGKRVTGFSNEEEKQVQLDKYMPFLTEDELKARGATYEKASDAWAPFALSDARVITGQNPASGGAVAETLLKEL 697 M KK+LVV+TS +YP + R TGLWLGE VHFV+KV++AGY+VDYVSP GGYTPIDPHSL MAD+ DW+WY +K FM RLGA P QV+ ADY+ IYY GGHG VWDFPDN+ LQAL+RSIYE+GG V+SVCHGA LLNI LSDG+ LI GK VTGFSN EEK +LD+Y+P+LTEDE+ RGA Y+KA++ WAPFA++D RVITGQNPASGG VA+ +LKEL Sbjct: 1 MSKKMLVVLTSFPKYPN--LARATGLWLGEAVHFVRKVQDAGYQVDYVSPKGGYTPIDPHSLAMADEGDWQWYQDKAFMNRLGATLKPDQVNPADYSVIYYAGGHGVVWDFPDNEALQALSRSIYESGGIVSSVCHGAVGLLNIKLSDGSLLIEGKEVTGFSNNEEKIAELDQYVPYLTEDEMVKRGAIYQKAAEPWAPFAVADRRVITGQNPASGGPVADLVLKEL 225 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348126 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4062 ID=mRNA_4062|Name=jgi.p|Trimin1|348126|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=904bp|location=Sequence derived from alignment at Contig_20:205693..208511- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. AAAAAACGCAAGCAAAATGGGCAAGAAGATCCTCGTCGTCGTGACATCGGback to top protein sequence of jgi.p|Trimin1|348126 >Trimin1|348126|estExt_Genemark1.C_Ctg_200026 ID=Trimin1|348126|estExt_Genemark1.C_Ctg_200026|Name=jgi.p|Trimin1|348126|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=231bp MGKKILVVVTSVERYPPDLVKRPTGLWLGECVHFVKKVEEAGYEVDYVSPback to top mRNA from alignment at Contig_20:205693..208511- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_4062 ID=mRNA_4062|Name=jgi.p|Trimin1|348126|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2819bp|location=Sequence derived from alignment at Contig_20:205693..208511- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_20:205693..208511- >mRNA_4062 ID=mRNA_4062|Name=jgi.p|Trimin1|348126|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=693bp|location=Sequence derived from alignment at Contig_20:205693..208511- (Tribonema minus UTEX_B_3156 )back to top |