mRNA_4051 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|153859
Unique NamemRNA_4051
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|153859 vs. uniprot
Match: A0A836CJS4_9STRA (Cytochrome b5-like heme/steroid binding domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJS4_9STRA)

HSP 1 Score: 168 bits (425), Expect = 3.360e-53
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:    1 AEVRQHKTPTDVWCTFRGRVYNMSPFLHQHPGGPESIMRAAGGDMTPLFEKYHRWVNADALIGHLCVGVIAPDE 222
            AEVRQHKTPTDVWCTFRGRVYNMSPFLHQHPGGPESIMRAAGGDMTPLFEKYHRWVNADALIGHLCVGVIAPDE
Sbjct:    1 AEVRQHKTPTDVWCTFRGRVYNMSPFLHQHPGGPESIMRAAGGDMTPLFEKYHRWVNADALIGHLCVGVIAPDE 74
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BLAST of jgi.p|Trimin1|153859 vs. uniprot
Match: A0A835ZLC4_9STRA (Cytochrome b5-like heme/steroid binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLC4_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.340e-29
Identity = 47/73 (64.38%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:    1 AEVRQHKTPTDVWCTFRGRVYNMSPFLHQHPGGPESIMRAAGGDMTPLFEKYHRWVNADALIGHLCVGVIAPD 219
            AEVRQH++  D W  + GRVYN++PFLH HPGG E +MR AG DMT LF KYHRWVNA  +IG+LC+GV+A D
Sbjct:   61 AEVRQHRSEHDAWSIYEGRVYNITPFLHYHPGGVEMLMRGAGVDMTGLFNKYHRWVNAQNMIGNLCLGVLAKD 133
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BLAST of jgi.p|Trimin1|153859 vs. uniprot
Match: D7FWC5_ECTSI (Similar to Cytochrome b5 reductase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWC5_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.420e-26
Identity = 43/74 (58.11%), Postives = 54/74 (72.97%), Query Frame = 1 
Query:    1 AEVRQHKTPTDVWCTFRGRVYNMSPFLHQHPGGPESIMRAAGGDMTPLFEKYHRWVNADALIGHLCVGVIAPDE 222
            AEVRQH T  D W  FRG+VYN++PFLH HPGG   IM+ AG D T LF+KYHRWVN D L+G+L +G +  ++
Sbjct:    7 AEVRQHNTQHDCWSIFRGKVYNLTPFLHYHPGGIPEIMKGAGRDCTALFDKYHRWVNFDGLVGNLYLGPLVTEK 80
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BLAST of jgi.p|Trimin1|153859 vs. uniprot
Match: A0A835YMZ1_9CHLO (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YMZ1_9CHLO)

HSP 1 Score: 97.4 bits (241), Expect = 4.880e-24
Identity = 41/71 (57.75%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:    1 AEVRQHKTPTDVWCTFRGRVYNMSPFLHQHPGGPESIMRAAGGDMTPLFEKYHRWVNADALIGHLCVGVIA 213
            AEV QHKT  D W   RG+VYN++P+L  HPGGPE +++AAG D T LF K+H WVNADAL+    VG++A
Sbjct:   94 AEVAQHKTADDAWMVLRGKVYNVTPYLRFHPGGPEILVKAAGKDATALFTKFHAWVNADALLDKCLVGLLA 164
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BLAST of jgi.p|Trimin1|153859 vs. uniprot
Match: A0A830HDR1_9CHLO (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HDR1_9CHLO)

HSP 1 Score: 91.7 bits (226), Expect = 3.090e-22
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:    4 EVRQHKTPTDVWCTFRGRVYNMSPFLHQHPGGPESIMRAAGGDMTPLFEKYHRWVNADALIGHLCVGVIA 213
            EVR+H TP D WC  RG VY+++P+LH HPGG ESI   AG D T +FE YH+WVN  A++    +G++A
Sbjct:   54 EVRRHATPDDAWCVLRGVVYDITPYLHYHPGGFESIASVAGTDATRVFEFYHKWVNYHAMLEKCAIGILA 123
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BLAST of jgi.p|Trimin1|153859 vs. uniprot
Match: A0A7S2DDF3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DDF3_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 3.090e-21
Identity = 38/73 (52.05%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:    4 EVRQHKTPTDVWCTFRGRVYNMSPFLHQHPGGPESIMRAAGGDMTPLFEKYHRWVNADALIGHLCVGVIAPDE 222
            EV  H + +D+W  FRG+VYN++P+L  HPGG + +M++AG D T LF+KYH WVNA  LIG L VG +  D 
Sbjct:   51 EVAMHSSESDMWTVFRGKVYNITPYLDYHPGGVDILMQSAGKDCTVLFDKYHSWVNARGLIGPLVVGELDEDS 123
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BLAST of jgi.p|Trimin1|153859 vs. uniprot
Match: A0A7J7MMC7_9MAGN (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7MMC7_9MAGN)

HSP 1 Score: 90.5 bits (223), Expect = 6.870e-21
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:    4 EVRQHKTPTDVWCTFRGRVYNMSPFLHQHPGGPESIMRAAGGDMTPLFEKYHRWVNADALIGHLCVGVI 210
            EV+QHKT   +W   +GRVYN+SP++  HPGG + +M+AAG D T LF KYH WVNA+AL+    VG +
Sbjct:  136 EVKQHKTEGSIWTVLKGRVYNISPYMKFHPGGYDMLMKAAGKDCTSLFNKYHAWVNAEALLEKCLVGTL 204
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BLAST of jgi.p|Trimin1|153859 vs. uniprot
Match: A0A8J4GA65_9CHLO (Cytochrome b5 heme-binding domain-containing protein n=2 Tax=Volvox TaxID=3066 RepID=A0A8J4GA65_9CHLO)

HSP 1 Score: 89.0 bits (219), Expect = 1.050e-20
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:    4 EVRQHKTPTDVWCTFRGRVYNMSPFLHQHPGGPESIMRAAGGDMTPLFEKYHRWVNADALIGHLCVGVIAPD 219
            EV++H T  D W   RG+VYN+ P++  HPGG   +++AAG D TPLF KYH WVNADAL+    +G +A +
Sbjct:   95 EVQKHHTADDAWMVLRGKVYNIGPYMRFHPGGAAILLKAAGKDGTPLFMKYHPWVNADALLEKCLIGTLAQE 166
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BLAST of jgi.p|Trimin1|153859 vs. uniprot
Match: A0A7S3G4S3_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3G4S3_9EUKA)

HSP 1 Score: 87.4 bits (215), Expect = 2.900e-20
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:    4 EVRQHKTPTDVWCTFRGRVYNMSPFLHQHPGGPESIMRAAGGDMTPLFEKYHRWVNADALI 186
            EVR+HKT  D W  F G VY++S ++H HPGG + +M AAG D TPLF KYH WVN  ALI
Sbjct:   71 EVREHKTLDDCWIIFEGNVYDISSYMHYHPGGTDKLMLAAGRDATPLFRKYHAWVNGKALI 131
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BLAST of jgi.p|Trimin1|153859 vs. uniprot
Match: A0A1L0D6L8_9ASCO (CIC11C00000004340 n=2 Tax=[Candida] intermedia TaxID=45354 RepID=A0A1L0D6L8_9ASCO)

HSP 1 Score: 84.7 bits (208), Expect = 2.640e-19
Identity = 34/69 (49.28%), Postives = 47/69 (68.12%), Query Frame = 1 
Query:    4 EVRQHKTPTDVWCTFRGRVYNMSPFLHQHPGGPESIMRAAGGDMTPLFEKYHRWVNADALIGHLCVGVI 210
            E+++H + TD W    GRV+N++ ++H HPGG E IM+ AG D T LF KYH WVN D L+ +  VGV+
Sbjct:   73 ELKKHSSKTDCWTCINGRVFNLTRYIHFHPGGVEEIMKCAGKDGTTLFNKYHSWVNPDRLLENCIVGVL 141
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|153859 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CJS4_9STRA3.360e-53100.00Cytochrome b5-like heme/steroid binding domain-con... [more]
A0A835ZLC4_9STRA1.340e-2964.38Cytochrome b5-like heme/steroid binding domain-con... [more]
D7FWC5_ECTSI1.420e-2658.11Similar to Cytochrome b5 reductase 4 n=1 Tax=Ectoc... [more]
A0A835YMZ1_9CHLO4.880e-2457.75Cytochrome b5 heme-binding domain-containing prote... [more]
A0A830HDR1_9CHLO3.090e-2252.86Cytochrome b5 heme-binding domain-containing prote... [more]
A0A7S2DDF3_9STRA3.090e-2152.05Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7J7MMC7_9MAGN6.870e-2153.62Cytochrome b5 heme-binding domain-containing prote... [more]
A0A8J4GA65_9CHLO1.050e-2050.00Cytochrome b5 heme-binding domain-containing prote... [more]
A0A7S3G4S3_9EUKA2.900e-2059.02Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A1L0D6L8_9ASCO2.640e-1949.28CIC11C00000004340 n=2 Tax=[Candida] intermedia Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_20contigContig_20:126738..127322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|153859|gw1.20.265.1
BRITEko00000,ko00001,ko00002,ko01000
KEGG rclassRC02812
KEGG ReactionR00100,R00794,R00796
KEGG ModuleM00531
KEGG Pathwayko00520,ko00910,ko01120,map00520,map00910,map01120
KEGG koko:K00326,ko:K10534
EC1.6.2.2,1.7.1.1,1.7.1.2,1.7.1.3
GOsGO:0000166,GO:0002790,GO:0003032,GO:0003674,GO:0003824,GO:0003958,GO:0004128,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006066,GO:0006091,GO:0006139,GO:0006629,GO:0006694,GO:0006696,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006778,GO:0006793,GO:0006796,GO:0006801,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006950,GO:0006974,GO:0007154,GO:0007267,GO:0008104,GO:0008150,GO:0008152,GO:0008202,GO:0008204,GO:0008610,GO:0009058,GO:0009117,GO:0009306,GO:0009593,GO:0009628,GO:0009914,GO:0009987,GO:0010817,GO:0012505,GO:0015031,GO:0015701,GO:0015711,GO:0015833,GO:0016020,GO:0016125,GO:0016126,GO:0016128,GO:0016129,GO:0016174,GO:0016491,GO:0016651,GO:0016653,GO:0019362,GO:0019637,GO:0020037,GO:0023052,GO:0023061,GO:0030072,GO:0030073,GO:0030154,GO:0031984,GO:0032502,GO:0032940,GO:0033013,GO:0033036,GO:0033500,GO:0033554,GO:0034641,GO:0036094,GO:0042168,GO:0042175,GO:0042221,GO:0042440,GO:0042493,GO:0042592,GO:0042593,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044107,GO:0044108,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046165,GO:0046483,GO:0046496,GO:0046677,GO:0046879,GO:0046903,GO:0046906,GO:0048037,GO:0048468,GO:0048471,GO:0048856,GO:0048869,GO:0048878,GO:0050660,GO:0050662,GO:0050664,GO:0050896,GO:0051179,GO:0051186,GO:0051234,GO:0051606,GO:0051716,GO:0055086,GO:0055114,GO:0065007,GO:0065008,GO:0070482,GO:0071702,GO:0071704,GO:0071705,GO:0072524,GO:0072593,GO:0097159,GO:0097384,GO:0098827,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653
Preferred nameCYB5R4
Descriptionoxidoreductase activity, acting on NAD(P)H, heme protein as acceptor
COG categoryC
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5274@1|root,KOG0536@2759|Eukaryota
Evalue2.34e-27
Seed ortholog2880.D7FWC5
Hectar predicted targeting categoryother localisation
TranscriptId154181
TrackFilteredModels1
ProteinId153859
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|153859gene_4051Tribonema minus UTEX_B_3156 geneContig_20 126738..127322 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|153859Trimin1|153859|gw1.20.265.1Tribonema minus UTEX_B_3156 polypeptideContig_20 126738..127322 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4051_2exon_4051_2Tribonema minus UTEX_B_3156 exonContig_20 126738..126798 -
exon_4051_1exon_4051_1Tribonema minus UTEX_B_3156 exonContig_20 127162..127322 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4051CDS_4051Tribonema minus UTEX_B_3156 CDSContig_20 127162..127322 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4051 ID=mRNA_4051|Name=jgi.p|Trimin1|153859|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=222bp|location=Sequence derived from alignment at Contig_20:126738..127322- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCAGAGGTGAGACAACACAAGACGCCAACAGATGTGTGGTGCACGTTCAG
GGGGCGCGTGTACAACATGTCGCCCTTCCTGCACCAGCATCCGGGGGGGC
CGGAGTCCATCATGCGCGCGGCGGGCGGAGACATGACACCACTCTTTGAG
AAGTACCACAGGTGGGTGAACGCGGATGCACTGATTGGACATCTCTGCGT
CGGAGTCATCGCTCCAGACGAA
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protein sequence of jgi.p|Trimin1|153859

>Trimin1|153859|gw1.20.265.1 ID=Trimin1|153859|gw1.20.265.1|Name=jgi.p|Trimin1|153859|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=74bp
AEVRQHKTPTDVWCTFRGRVYNMSPFLHQHPGGPESIMRAAGGDMTPLFE
KYHRWVNADALIGHLCVGVIAPDE
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mRNA from alignment at Contig_20:126738..127322-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4051 ID=mRNA_4051|Name=jgi.p|Trimin1|153859|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=585bp|location=Sequence derived from alignment at Contig_20:126738..127322- (Tribonema minus UTEX_B_3156 )
GCAGAGGTGAGACAACACAAGACGCCAACAGATGTGTGGTGCACGTTCAG
GGGGCGCGTGTACAACATGTCGCCCTTCCTGCACCAGCATCCGGGGGGGC
CGGAGTCCATCATGCGCGCGGCGGGCGGAGACATGACACCACTCTTTGAG
AAGTACCACAGGTGCGCACAGATCGTACCCGCTTGTGTGTGCCATGTTGA
TTTGCTTCCGAGGTTTTTTTGGGTGTTTTCCAACTCGCAGCAGTTGGAGC
AGCACAACAGCAGCTTTCGTGGCAGTGCGCTCAAGCTACTGATGGCAGAC
CTTACTCACGAGTCAACCGACTTTGACATGTGAACCTCATTGTGCGCATA
CATAGCTCCCGTGTACTCCAAAAGTATGAAGGCGTCAGCGCCATTCTTTG
TCATCGCCTCTGCCTGACAATCGGCAAGCACTGATGTAACACGCGTACCC
CAAGCCATGTACCATGGTTGAAGTATAACGTTTATGCTGTTTCTGCTCGC
TGTGCTCTGCGCCGCACGCCCTAGGTGGGTGAACGCGGATGCACTGATTG
GACATCTCTGCGTCGGAGTCATCGCTCCAGACGAA
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Coding sequence (CDS) from alignment at Contig_20:126738..127322-

>mRNA_4051 ID=mRNA_4051|Name=jgi.p|Trimin1|153859|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=222bp|location=Sequence derived from alignment at Contig_20:126738..127322- (Tribonema minus UTEX_B_3156 )
GCAGAGGTGAGACAACACAAGACGCCAACAGATGTGTGGTGCACGTTCAG
GGGGCGCGTGTACAACATGTCGCCCTTCCTGCACCAGCATCCGGGGGGGC
CGGAGTCCATCATGCGCGCGGCGGGCGGAGACATGACACCACTCTTTGAG
AAGTACCACAGGTGGGTGAACGCGGATGCACTGATTGGACATCTCTGCGT
CGGAGTCATCGCTCCAGACGAA
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