mRNA_4025 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347771
Unique NamemRNA_4025
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|347771 vs. uniprot
Match: A0A835ZB51_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB51_9STRA)

HSP 1 Score: 546 bits (1406), Expect = 6.220e-195
Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 1 
Query:    1 MAPTDDSRFDPLLGELGGTKGGAAGRGERERDKIKLGDIFRAPWSRKPPPKSQLPRDRMPKDINAALCICGSGLTYDDALQPTELLRARFAAFAYRLPLFIMKTTARGGSEWKGDQGAWVAEILEFCDDYRFLGLDIGPERKAGVNVAYLTFTASLELSERPVRGQVTQVDFTERSRFVKEGARWMYEGGSLLEVSRVNKSTRLDNGSGXXXXXXXXXXXXXGAAAISCVRAAQGVRHMRCSGGGGCLDAAAEAQLLCTPGPSVTVSALVSMLAASDAVDVHQTHAARA 867
            MAPTDDSRFDPLLGELGGTKGGAAGRGERERDKIKLGDIFRAPWSRKPPPKSQLPRDRMPKDINAALCICGSGLTYDDALQPTELLRARFAAFAYRLPLFIMKTTARGGSEWKGDQGAWVAEILEFCDDYRFLGLDIGPERKAGVNVAYLTFTASLELSERPVRGQVTQVDFTERSRFVKEGARWMYEGGSLLEVSRVNKSTRLDNGSGXXXXXXXXXXXXXGAAAISCVRAAQGVRHMRCSGGGGCLDAAAEAQLLCTPGPSVTVSALVSMLAASDAVDVHQTHAARA
Sbjct:    1 MAPTDDSRFDPLLGELGGTKGGAAGRGERERDKIKLGDIFRAPWSRKPPPKSQLPRDRMPKDINAALCICGSGLTYDDALQPTELLRARFAAFAYRLPLFIMKTTARGGSEWKGDQGAWVAEILEFCDDYRFLGLDIGPERKAGVNVAYLTFTASLELSERPVRGQVTQVDFTERSRFVKEGARWMYEGGSLLEVSRVNKSTRLDNGSGXXXXXXXXXXXXXGAAAISCVRAAQGVRHMRCSGGGGCLDAAAEAQLLCTPGPSVTVSALVSMLAASDAVDVHQTHAARA 289
[Close]
BLAST of jgi.p|Trimin1|347771 vs. uniprot
Match: A0A7J7IDA3_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IDA3_9RHOD)

HSP 1 Score: 118 bits (296), Expect = 1.300e-28
Identity = 65/150 (43.33%), Postives = 86/150 (57.33%), Query Frame = 1 
Query:  169 DRMPKDINAALCICGSGLTYDDALQPT-----------ELLRARFAAFAYRLPLFIMKTTARGGSEWKGDQGAWVAEILEFCDDYRFLGLDIGPERKAGVNVAYLTFTASLELSERPVRGQVTQVDFTERSRFVKEGARWMYEGGSLLEV 585
            DR+P+  +   C CGSG TY     P            ELLRAR++AFAYRLP FIM+TT++   ++  D   W A+ILEFCD YRF G++I  E++A  +V ++ F A+L        G +    F ERSRF KE  RWMY  G L+E 
Sbjct:   37 DRVPQQSDVP-CACGSGRTYQHCCMPVHLGSRVPPEADELLRARYSAFAYRLPAFIMRTTSKTNPDYTDDWNRWEADILEFCDTYRFPGMEILDEKRASPDVCFIQFRANLIYE-----GMLGF--FIERSRFAKERGRWMYASGKLVEA 178
[Close]
BLAST of jgi.p|Trimin1|347771 vs. uniprot
Match: M2X0P2_GALSU (SEC-C motif domain protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X0P2_GALSU)

HSP 1 Score: 116 bits (290), Expect = 4.090e-27
Identity = 63/154 (40.91%), Postives = 88/154 (57.14%), Query Frame = 1 
Query:  163 PRDRMPKDINAALCICGSGLTYDDALQP-----------TELLRARFAAFAYRLPLFIMKTTARGGSEWKGDQGAWVAEILEFCDDYRFLGLDIGPERKAGVNVAYLTFTASLELSERPVRGQVTQVDFTERSRFVKEGARWMYEGGSLLEVSR 591
            P+ R P +   ALCICG+G  Y    +P            ELLRARF+AFAYRL  +IM TT     +W  D+ AW   ILEFCD Y F+ LDI   + AG ++ Y+ F A+L       +G+   ++F ERS+F+K+  RW Y+ G L+++ R
Sbjct:   93 PKSRAPSED--ALCICGTGRVYKRCCRPFHIGESEPRTALELLRARFSAFAYRLSKYIMGTTHISNEDWTSDRLAWENSILEFCDQYSFISLDILENKVAGPDLTYILFRANLV-----EKGEA--LNFIERSKFIKDRNRWYYQSGRLVDIER 237
[Close]
BLAST of jgi.p|Trimin1|347771 vs. uniprot
Match: M1VH01_CYAM1 (Uncharacterized protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VH01_CYAM1)

HSP 1 Score: 114 bits (286), Expect = 1.590e-26
Identity = 65/156 (41.67%), Postives = 91/156 (58.33%), Query Frame = 1 
Query:  151 KSQLPRDRMPKDINAALCICGSGLTYDDALQP-----------TELLRARFAAFAYRLPLFIMKTTARGGSEWKGDQGAWVAEILEFCDDYRFLGLDIGPERKAGVNVAYLTFTASLELSERPVRGQVTQVDFTERSRFVKEGARWMYEGGSLLEV 585
            K +   DR+P++     C CGSG TY +   P            ELLRAR++AFAYRLP FIM+TT++   ++  D   W A+ILEFCD YRF G+++  E+ A  +V+++ F A+L + E  +        F ERSRFVKE  +WMY  G L+E 
Sbjct:   88 KKRTRSDRVPQNPEIP-CACGSGRTYRNCCMPFHTNSKAPAEAEELLRARYSAFAYRLPGFIMRTTSKTNPDYTDDWNRWEADILEFCDLYRFPGMEVLDEKTASPDVSFIQFRANL-IYEGALGF------FIERSRFVKERGKWMYASGKLVEA 235
[Close]
BLAST of jgi.p|Trimin1|347771 vs. uniprot
Match: A0A835YGG3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGG3_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.040e-20
Identity = 63/161 (39.13%), Postives = 83/161 (51.55%), Query Frame = 1 
Query:  202 CICGSGLTYDD--------------ALQPTELLRARFAAFAYRLPLFIMKTTARGGSEWKGDQGAWVAEILEFCDDY---------------RFLGLDIGPERK----AGVNVAYLTFTASLELSERPVRGQVTQVDFTERSRFVKEGARWMYEGGSLLEV 585
            C CGS L Y                A  PT+LLRARFAA+A   P F++ +TAR  +EW  D  AW+AE+  +   +               RF+GLD+GPE++    AG   A L FTA+LE  E P  G+  ++ FTERS FV+    W Y GG+LL  
Sbjct:   91 CPCGSALRYGRCCLPLHAGDGAAAAAAGPTQLLRARFAAYAALRPEFVVASTARDSAEWHADTDAWLAELAAYSRRHSAQSTSHCFVRAAPRRFIGLDLGPEKRGVSDAGEATATLIFTATLESLEAP--GE--EIVFTERSFFVQRAGCWYYAGGALLSA 247
[Close]
BLAST of jgi.p|Trimin1|347771 vs. uniprot
Match: A0A7S0EAP5_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EAP5_9CRYP)

HSP 1 Score: 96.7 bits (239), Expect = 2.200e-19
Identity = 57/155 (36.77%), Postives = 80/155 (51.61%), Query Frame = 1 
Query:  172 RMPKDINAALCICGSGLTYDDALQ-----------PTELLRARFAAFAYRLPLFIMKTTARGGSEWKGDQGAWVAEILEFCDDYRF-------LGLDIGPERKAGVNVAYLTFTASLELSERPVRGQVTQVDFTERSRFVKEGARWMYEGGSLLE 582
            R+P   +  LC CGSG TY    +           P +L+RAR++AFAYRLP FI++TT+R   EW  +Q  W+ E+L+F D Y+F       LG++I     +    AY+ F A +      V      V F ER +  +E   W YE G+LLE
Sbjct:  137 RLPDKADKTLCACGSGRTYYRCCRDHHNCAGAPEDPVDLIRARYSAFAYRLPSFIIRTTSRKSKEWTVNQKKWMKELLDFMDSYKFETSKGEPLGIEIQECIFSDKQNAYIQFQADM------VGEGDRLVSFVERCKLRREDDGWYYERGNLLE 285
[Close]
BLAST of jgi.p|Trimin1|347771 vs. uniprot
Match: A0A6T8BXI0_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A6T8BXI0_9EUKA)

HSP 1 Score: 92.0 bits (227), Expect = 4.890e-18
Identity = 64/186 (34.41%), Postives = 86/186 (46.24%), Query Frame = 1 
Query:   55 TKGGAAGRGERERDKIKLGDIFRAPWSRKPPPKSQLPRDRMPKDINAALCICGSGLTYD------------DALQPTELLRARFAAFAYRLPLFIMKTTARGGSEWKGDQGAWVAEILEFCDDYRFLGLDIGPERKAGVNVAYLTFTASLELSERPVRGQVTQVDFTERSRFVKEGARWMYEGGSL 576
            +KGG   RG+  R + K     +   S  P P   L  DR PK   AA C CGSGL Y             DA  P+ L+RAR+ AF YRLP F+M T    G E++ D G W   +L FCD   F  L +     A  +   + F AS        +G +  +D  E+S FV    +W+Y  G++
Sbjct:   64 SKGGMLPRGKGFRSEQKAASKAKGFGSTGPKPSGGLKYDRRPKA--AAQCACGSGLAYGKCCSPSHEAMGCDAADPSALVRARYTAFRYRLPDFLMATCDPCGDEYQTDHGEWKKSLLHFCDQMDFRKLTVESVDGAA-SPPTVEFRASFVQ-----KGTLNLMDVIEKSEFVHSEGKWLYTRGTV 241
[Close]
BLAST of jgi.p|Trimin1|347771 vs. uniprot
Match: L1K0Q6_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1K0Q6_GUITC)

HSP 1 Score: 87.0 bits (214), Expect = 2.810e-16
Identity = 56/159 (35.22%), Postives = 77/159 (48.43%), Query Frame = 1 
Query:  166 RDRMPKDINAALCICGSGLTYDDA-----------LQPTELLRARFAAFAYRLPLFIMKTTARGGSEWKGDQGAWVAEILEFCDDYRFLGLDIGPERKAGVNVAYLTFT----ASLELSERPVRGQVTQVDFTERSRFVKEGAR-----WMYEGGSLLE 582
            ++R+P +     C CGSG  Y+             L P EL+RAR++AFAY LP F+M+TTAR   E+  +Q  W  E+++FC  Y F           GVNV    FT    A ++   R +      V+F ERS   +  A+     W Y  GSLLE
Sbjct:   80 QNRVPVNPRTTPCACGSGFMYERCCGRWHSSENPPLDPVELIRARYSAFAYCLPDFLMRTTARKSPEYNTNQAMWRRELIDFCQSYSF---QTNGGEILGVNVEECQFTEKDRAYVQFRARMLGPGSKLVEFWERSVLERSNAKGRQGCWYYLKGSLLE 235
[Close]
BLAST of jgi.p|Trimin1|347771 vs. uniprot
Match: A0A7S4NI85_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NI85_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 3.080e-15
Identity = 57/184 (30.98%), Postives = 95/184 (51.63%), Query Frame = 1 
Query:   97 KIKLGDIFRAPWSRKPPPKSQLP---RDRMPK--DINAALCICGSGLTYDDALQP-----------TELLRARFAAFAYRLPLFIMKTTARGGSEWKGDQGAWVAEI--LEFCDDYRFLGLDIGPER--KAGVNVAYLTFTASLELSERPVRGQVT--QVDFTERSRFVKEGAR--WMYEGGSL 576
            K K G   R  +   PP   ++    R R+P   ++ +  C CGSG  Y +  +P           +E+LR R++AFAYRLP +I++TT    ++W+ D+  WV ++      D + F GL++GPE   +   +  ++ F   L +++R V G+    +   +ERSRF+K+G    W Y GG +
Sbjct:   54 KAKRGASTRKGFGAPPPTYDEIVAGLRTRVPPSDEVESQDCQCGSGSKYGECCRPYHIGSVLPSSPSEVLRTRYSAFAYRLPSYIIQTTHPECADWREDKIGWVKDLDRAGMFDSFEFAGLEVGPEEPGEESADEGFVQFRVRL-VTKRSVDGKRAGQETSISERSRFLKDGEPLCWRYAGGEV 236
[Close]
BLAST of jgi.p|Trimin1|347771 vs. uniprot
Match: A0A0S4XPI6_9PROT (Uncharacterized protein n=1 Tax=Sulfurovum sp. enrichment culture clone C5 TaxID=497650 RepID=A0A0S4XPI6_9PROT)

HSP 1 Score: 80.1 bits (196), Expect = 8.710e-15
Identity = 51/141 (36.17%), Postives = 73/141 (51.77%), Query Frame = 1 
Query:  187 INAALCICGSGLTYDDALQ-------PTE---LLRARFAAFAYRLPLFIMKTTARGGSEWKGDQGAWVAEILEFCDDYRFLGLDIGPERKAGVNVAYLTFTASLELSERPVRGQVTQVDFTERSRFVKEGARWMYEGGSLL 579
            +NA  C+C SG  Y    Q       P+    L+R+R++AFA RL  +I+ +T    S++  D   W   I+EFCD+  F GL+I  E   G N A++TF A L             V F E+SRF+KE  +W+YE G  +
Sbjct:    5 VNAP-CLCFSGKKYKKCCQVYHAGVNPSNAMLLMRSRYSAFALRLVGYIIASTHPNNSDYTKDTKEWEEGIVEFCDNTNFTGLEI-MEFVDGENEAFVTFKAILG-----------DVQFIEKSRFLKENGKWLYESGEFV 132
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347771 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZB51_9STRA6.220e-195100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7J7IDA3_9RHOD1.300e-2843.33Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
M2X0P2_GALSU4.090e-2740.91SEC-C motif domain protein n=1 Tax=Galdieria sulph... [more]
M1VH01_CYAM11.590e-2641.67Uncharacterized protein n=1 Tax=Cyanidioschyzon me... [more]
A0A835YGG3_9STRA1.040e-2039.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0EAP5_9CRYP2.200e-1936.77Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A6T8BXI0_9EUKA4.890e-1834.41Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
L1K0Q6_GUITC2.810e-1635.22Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
A0A7S4NI85_9STRA3.080e-1530.98Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A0S4XPI6_9PROT8.710e-1536.17Uncharacterized protein n=1 Tax=Sulfurovum sp. enr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_15contigContig_15:1444780..1447842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347771|estExt_Genemark1.C_Ctg_150168
BRITEko00000
KEGG koko:K09858
Max annot lvl2759|Eukaryota
EggNOG OGsCOG3012@1|root,2S4BV@2759|Eukaryota
Evalue2.41e-28
Seed ortholog130081.XP_005706435.1
Hectar predicted targeting categoryother localisation
TranscriptId348093
TrackFilteredModels1
ProteinId347771
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347771gene_4025Tribonema minus UTEX_B_3156 geneContig_15 1444780..1447842 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347771Trimin1|347771|estExt_Genemark1.C_Ctg_150168Tribonema minus UTEX_B_3156 polypeptideContig_15 1444920..1447842 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4025_6exon_4025_6Tribonema minus UTEX_B_3156 exonContig_15 1444780..1445172 -
exon_4025_5exon_4025_5Tribonema minus UTEX_B_3156 exonContig_15 1445257..1445366 -
exon_4025_4exon_4025_4Tribonema minus UTEX_B_3156 exonContig_15 1445937..1446017 -
exon_4025_3exon_4025_3Tribonema minus UTEX_B_3156 exonContig_15 1446460..1446537 -
exon_4025_2exon_4025_2Tribonema minus UTEX_B_3156 exonContig_15 1446919..1447042 -
exon_4025_1exon_4025_1Tribonema minus UTEX_B_3156 exonContig_15 1447619..1447842 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_4025UTR3_4025Tribonema minus UTEX_B_3156 three_prime_UTRContig_15 1444780..1444919 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4025CDS_4025Tribonema minus UTEX_B_3156 CDSContig_15 1447619..1447842 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4025 ID=mRNA_4025|Name=jgi.p|Trimin1|347771|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1010bp|location=Sequence derived from alignment at Contig_15:1444780..1447842- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCGACCGATGACAGCCGATTCGACCCACTGCTAGGCGAGTTGGG
CGGGACAAAGGGGGGAGCAGCAGGGAGAGGGGAGAGAGAAAGGGACAAGA
TCAAATTGGGCGACATATTTCGGGCACCGTGGTCGCGCAAGCCACCGCCC
AAGTCGCAGCTGCCGCGGGATCGGATGCCGAAGGACATCAACGCGGCGCT
CTGCATCTGCGGCAGCGGGCTGACGTACGACGACGCGCTGCAGCCGACGG
AGCTGCTGCGCGCGCGCTTCGCGGCGTTCGCGTACCGGCTGCCGCTGTTC
ATCATGAAGACGACGGCGCGCGGCGGCAGCGAGTGGAAGGGCGATCAGGG
TGCGTGGGTCGCGGAAATACTGGAGTTTTGCGACGACTATAGATTTCTGG
GCCTAGACATTGGCCCCGAGCGCAAGGCGGGCGTTAACGTGGCGTACCTC
ACTTTTACGGCGTCCCTGGAGCTCAGCGAGCGGCCGGTGCGCGGCCAGGT
CACGCAGGTCGACTTTACGGAGCGCAGCCGCTTTGTGAAGGAGGGCGCGC
GCTGGATGTACGAGGGCGGCAGCCTGCTAGAGGTGTCGCGCGTCAACAAG
TCCACGCGCTTGGACAATGGCAGCGGCGGCGGCGGCGGCAGCAGCGGCGG
CGAATGGTGCTGCAGCGGAGCGGCGGCGATAAGCTGCGTGCGCGCTGCGC
AAGGGGTTCGGCACATGCGGTGCAGTGGCGGCGGAGGCTGTCTGGATGCG
GCAGCTGAGGCACAGCTGCTGTGCACGCCAGGACCTTCGGTCACTGTGTC
GGCGCTGGTGAGCATGCTGGCAGCCTCTGATGCCGTCGACGTGCATCAGA
CGCACGCTGCACGCGCGTAGCATGGTCTGCCGCGTGGCGCTGCGGCATCC
GTCATACCGCGCGTTACTTCAAGAGTGTAAGGGGGGGGCACAGCGCGCGC
TGCAGCCGCTGTCTGCTCGCCAGCTGACGGAGCAGTCTCAGTGCGCGGCC
ACTGCTGATT
back to top

protein sequence of jgi.p|Trimin1|347771

>Trimin1|347771|estExt_Genemark1.C_Ctg_150168 ID=Trimin1|347771|estExt_Genemark1.C_Ctg_150168|Name=jgi.p|Trimin1|347771|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=290bp
MAPTDDSRFDPLLGELGGTKGGAAGRGERERDKIKLGDIFRAPWSRKPPP
KSQLPRDRMPKDINAALCICGSGLTYDDALQPTELLRARFAAFAYRLPLF
IMKTTARGGSEWKGDQGAWVAEILEFCDDYRFLGLDIGPERKAGVNVAYL
TFTASLELSERPVRGQVTQVDFTERSRFVKEGARWMYEGGSLLEVSRVNK
STRLDNGSGGGGGSSGGEWCCSGAAAISCVRAAQGVRHMRCSGGGGCLDA
AAEAQLLCTPGPSVTVSALVSMLAASDAVDVHQTHAARA*
back to top

mRNA from alignment at Contig_15:1444780..1447842-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4025 ID=mRNA_4025|Name=jgi.p|Trimin1|347771|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3063bp|location=Sequence derived from alignment at Contig_15:1444780..1447842- (Tribonema minus UTEX_B_3156 )
ATGGCGCCGACCGATGACAGCCGATTCGACCCACTGCTAGGCGAGTTGGG
CGGGACAAAGGGGGGAGCAGCAGGGAGAGGGGAGAGAGAAAGGGACAAGA
TCAAATTGGGCGACATATTTCGGGCACCGTGGTCGCGCAAGCCACCGCCC
AAGTCGCAGCTGCCGCGGGATCGGATGCCGAAGGACATCAACGCGGCGCT
CTGCATCTGCGGCAGCGGGCTGACGTACGCGCGCTGCTGCCATCGTCTGC
ACAGCGGGTGAGAGCGCAGGAATGGCTTCATATGCAGCACTAGTAGAGAG
GCAGTGTGATGCGCTCAGAGTTGTTGAGCAGGAGCATGTTATTCTGATCA
TGTGTGAGCAAGCCTCAACTGCGCGGTTGTTTAGTAGGTCTGGTGCGTCA
AGGGCAAGTAGCGTGAGTGACGGCACGAGTAGTGAAGCAGTGTGATGTGC
TCGGAGTTGGTGGGCAGGAGCATGTTATTCTGATCATGGGTGAGCAAGCC
TCAGCTGCGCAGTTTTGTAGTAGGTCTGGTGCGTCATCGGCCAGGAGAGT
GACCCTGCCCGTCCTCAGCGCCGGTGAGCACCACCACCATCGCCTTGTCG
CCCGCCGGCTCTCGCCGCGCCTGGCGACAGAGCACGCGCTCCTTATGATC
GTGCCGTCACAATGACATGCCGCATCTAGCTCTGATTCTCTATTGTGCCT
GGCACCGCGCCCTGCGCTGCCGCGGCGCCGCCGTCGCCACGTCAGCATCA
GTGCATTCGGCGCTCATAAGCAATCGCCGCACGCGCCTCCGCCCTCGCAG
GTACGACGACGCGCTGCAGCCGACGGAGCTGCTGCGCGCGCGCTTCGCGG
CGTTCGCGTACCGGCTGCCGCTGTTCATCATGAAGACGACGGCGCGCGGC
GGCAGCGAGTGGAAGGGCGATCAGGTGCGCGGCCGCGGAAGCCGTGTGGC
GGCGGGGGCTGTTGGAATAGGAGGTGTTTTGTTTTGTGCACTGTGCGTGC
CTGGCGGTAGGGCGGGATCAGGTTCTCAGGAGGAGTTTCTCTGACAACTT
CTGGTAGAGAGTTGCAGGCCCTGTGGATTGGCAGGAAGGTTTCCAGATCG
CATCCGTCGGTGACCATTGATATCATTCACGTGTCATTCTCGTCAGCCCC
CCCAGGCACCTGCGGGCGGCCTGCGGCCTGGCGCACGTGCTCTCCGTATC
TCTCTGCGCATCCCCTATCCATTTTAAACCAAAATGTCGATGCTGCTGCC
GTTTGCCGTGGTCGTGACGCGTGCGCCTCGCTGTCCGCTGCCCGCGTGCG
TGCAGGGTGCGTGGGTCGCGGAAATACTGGAGTTTTGCGACGACTATAGA
TTTCTGGGCCTAGACATTGGCCCCGAGCGCAAGGTACGCACGCCATCGCC
GTCGACATGGCGCCCGTGTACATTGGCACGTGATCAGCGCACGCGGCAGC
GTCAAGCGCCTGCCCCTGCAAGTGCCTGCCTTTGTGATTTGATCGTGTGC
ACAGAAATGTCAGCAGCAGTAGCATTGGCTGCAGCGGCAGCGCGAGCAGC
CAAGCTGCAGCTCGAGTCTGGCTGGTCAGCGCGCCTCACAATTGCGTGTC
TTCAGCGGCAGCAGCAGCAGCAGCAGCATCGGCAGCAGCCCAGCAGCAGC
TCGAATGCTGGCCGCACAGTGCGCCTTGCATCCGTACGCTGAGAGCGCTC
AGCTCGCCGCTTGGTTTGAGCGACTTCAACAGCTACCCCCTTCTATCACG
ATCACGTTGTCGCCTCGCTGCTTTCTGGCGCACTCACTTTCTGAGCGCCG
CCGCATTGCTTCGCGCTGCTCGCAGGCGGGCGTTAACGTGGCGTACCTCA
CTTTTACGGCGTCCCTGGAGCTCAGCGAGCGGCCGGTGCGCGGCCAGGTC
ACGCAGGTCGGCGCTTCGCAGCTCCTGTAGTGCCTTCACATCTCTGCGGG
AAGCATTGATATGCGTCAGAGCATCTGATGACAGCTTCCTGCTGCTGTGT
TTACACCATCTCATGGGTGCAGCACACGCTATAGATGCGGCGGGCAGCGC
GTCAGTCACGCGCCTGTAGGTGACGTGCAGTGCCCCGGGTTGGCTGCTGT
GATTGACGTGCCATGCCGTGGTCGGGTGCTCGACGAACCGAGTGCGGCAA
GGGTGATGCATGCACAGCAGGCAGTGACGGCGGCTGTGGGCAGCAAGGGT
TGCCCGATCCGCTGCAATGCCACCACTATGTTCATCGTGGCGAAGTGTTT
CTTGTAGTGAATGTTGATGCGCGTGTCAGTAGCATCCACCGTGGTGCTGC
TGCACTTCTGTCAGGCATGACGTCCTACGCTGGACGCTGCCACAGCCGCA
AGGATTGATGACAGCATTCACAACATTTTCCAATTCCCATGAGGACCAGA
ATGCACACGCGACACACACGAACACCGCTCAGCTTCACAAGTGTGACGCT
CTCCCCCCCGCGCGCTCACGCATCAGGTCGACTTTACGGAGCGCAGCCGC
TTTGTGAAGGAGGGCGCGCGCTGGATGTACGAGGGCGGCAGCCTGCTAGA
GGTGTCGCGCGTCAACAAGTCCACGCGCTTGGACAAGTCGGGGGGGCCCA
TTTTCTGAGACCCCCACCCTCCCCCTGTGCGCGACTTGCCTCGCCGCACA
TGCTGCCGCACCTGCGGCAGTGGCAGCGGCGGCGGCGGCGGCAGCAGCGG
CGGCGAATGGTGCTGCAGCGGAGCGGCGGCGATAAGCTGCGTGCGCGCTG
CGCAAGGGGTTCGGCACATGCGGTGCAGTGGCGGCGGAGGCTGTCTGGAT
GCGGCAGCTGAGGCACAGCTGCTGTGCACGCCAGGACCTTCGGTCACTGT
GTCGGCGCTGGTGAGCATGCTGGCAGCCTCTGATGCCGTCGACGTGCATC
AGACGCACGCTGCACGCGCGTAGCATGGTCTGCCGCGTGGCGCTGCGGCA
TCCGTCATACCGCGCGTTACTTCAAGAGTGTAAGGGGGGGGCACAGCGCG
CGCTGCAGCCGCTGTCTGCTCGCCAGCTGACGGAGCAGTCTCAGTGCGCG
GCCACTGCTGATT
back to top

Coding sequence (CDS) from alignment at Contig_15:1444780..1447842-

>mRNA_4025 ID=mRNA_4025|Name=jgi.p|Trimin1|347771|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=870bp|location=Sequence derived from alignment at Contig_15:1444780..1447842- (Tribonema minus UTEX_B_3156 )
ATGGCGCCGACCGATGACAGCCGATTCGACCCACTGCTAGGCGAGTTGGG
CGGGACAAAGGGGGGAGCAGCAGGGAGAGGGGAGAGAGAAAGGGACAAGA
TCAAATTGGGCGACATATTTCGGGCACCGTGGTCGCGCAAGCCACCGCCC
AAGTCGCAGCTGCCGCGGGATCGGATGCCGAAGGACATCAACGCGGCGCT
CTGCATCTGCGGCAGCGGGCTGACGTACGACGACGCGCTGCAGCCGACGG
AGCTGCTGCGCGCGCGCTTCGCGGCGTTCGCGTACCGGCTGCCGCTGTTC
ATCATGAAGACGACGGCGCGCGGCGGCAGCGAGTGGAAGGGCGATCAGGG
TGCGTGGGTCGCGGAAATACTGGAGTTTTGCGACGACTATAGATTTCTGG
GCCTAGACATTGGCCCCGAGCGCAAGGCGGGCGTTAACGTGGCGTACCTC
ACTTTTACGGCGTCCCTGGAGCTCAGCGAGCGGCCGGTGCGCGGCCAGGT
CACGCAGGTCGACTTTACGGAGCGCAGCCGCTTTGTGAAGGAGGGCGCGC
GCTGGATGTACGAGGGCGGCAGCCTGCTAGAGGTGTCGCGCGTCAACAAG
TCCACGCGCTTGGACAATGGCAGCGGCGGCGGCGGCGGCAGCAGCGGCGG
CGAATGGTGCTGCAGCGGAGCGGCGGCGATAAGCTGCGTGCGCGCTGCGC
AAGGGGTTCGGCACATGCGGTGCAGTGGCGGCGGAGGCTGTCTGGATGCG
GCAGCTGAGGCACAGCTGCTGTGCACGCCAGGACCTTCGGTCACTGTGTC
GGCGCTGGTGAGCATGCTGGCAGCCTCTGATGCCGTCGACGTGCATCAGA
CGCACGCTGCACGCGCGTAG
back to top