mRNA_3997 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|160951
Unique NamemRNA_3997
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|160951 vs. uniprot
Match: A0A835ZHQ8_9STRA (Calponin homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHQ8_9STRA)

HSP 1 Score: 464 bits (1194), Expect = 3.720e-164
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 1 
Query:    1 MVGRGGGYGLDAELALKAAAKYDFEGERTAQEWMEAVTGVKFEGSFASSLKDGTLLCQLINAIKPGTIKRINSSKMPFKQMENISNFLKACRTLGVAEYSLFETVDLFEEKDVGLVIRCLFALGSAVQSSTPEFAGPHLGAKPHTANKREFTAEQMRQARLDTTMTKAMQGSAAVMERLPIVKTGITAGAEYAGIGDTSSMCMTSMXXXXXXXXXXXXXXXXXXXXXXXGPSADANAVPHSSMGSAGIMEVSRERGGAGGGCASTPG 801
            MVGRGGGYGLDAELALKAAAKYDFEGERTAQEWMEAVTGVKFEGSFASSLKDGTLLCQLINAIKPGTIKRINSSKMPFKQMENISNFLKACRTLGVAEYSLFETVDLFEEKDVGLVIRCLFALGSAVQSSTPEFAGPHLGAKPHTANKREFTAEQMRQARLDTTMTKAMQGSAAVMERLPIVKTGITAGAEYAGIGDTSSMCMTSMXXXXXXXXXXXXXXXXXXXXXXXGPSADANAVPHSSMGSAGIMEVSRERGGAGGGCASTPG
Sbjct:    1 MVGRGGGYGLDAELALKAAAKYDFEGERTAQEWMEAVTGVKFEGSFASSLKDGTLLCQLINAIKPGTIKRINSSKMPFKQMENISNFLKACRTLGVAEYSLFETVDLFEEKDVGLVIRCLFALGSAVQSSTPEFAGPHLGAKPHTANKREFTAEQMRQARLDTTMTKAMQGSAAVMERLPIVKTGITAGAEYAGIGDTSSMCMTSMXXXXXXXXXXXXXXXXXXXXXXXGPSADANAVPHSSMGSAGIMEVSRERGGAGGGCASTPG 267
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BLAST of jgi.p|Trimin1|160951 vs. uniprot
Match: A0A836CGB8_9STRA (Calponin homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGB8_9STRA)

HSP 1 Score: 304 bits (779), Expect = 1.380e-101
Identity = 152/204 (74.51%), Postives = 176/204 (86.27%), Query Frame = 1 
Query:    1 MVG-RGGGYGLDAELALKAAAKYDFEGERTAQEWMEAVTGVKFEGSFASSLKDGTLLCQLINAIKPGTIKRINSSKMPFKQMENISNFLKACRTLGVAEYSLFETVDLFEEKDVGLVIRCLFALGSAVQSSTPEFAGPHLGAKPHTANKREFTAEQMRQARLDTTMTKAMQGSAAVMERLPIVKTGITAGAEYAGIGDTSSMCM 609
            MVG RGGGYGLDAELA KAAA YD+ GE  AQEW+EAVT VKFEG+FA++LKDG++LC+L+NAI+PGT+K+IN+S MPFKQMENIS +LK CR LGVAE+SLFETVDL+EEKD+ LVI+CLFALGS +QSS PEF GPHLGAK HTANKREFTAEQM +ARL   +TK  QGSAAVMERL + K GIT GAEYAG GD+ S+CM
Sbjct:    1 MVGARGGGYGLDAELARKAAANYDYAGEHAAQEWIEAVTRVKFEGTFAAALKDGSVLCKLLNAIRPGTVKKINTSSMPFKQMENISAYLKGCRALGVAEHSLFETVDLYEEKDISLVIKCLFALGSTIQSSVPEFHGPHLGAKMHTANKREFTAEQMAKARLGGAITKQTQGSAAVMERLHVTKGGITMGAEYAGTGDSGSICM 204
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BLAST of jgi.p|Trimin1|160951 vs. uniprot
Match: D7FJ16_ECTSI (Calponin-homology (CH) domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ16_ECTSI)

HSP 1 Score: 244 bits (622), Expect = 2.290e-76
Identity = 119/198 (60.10%), Postives = 151/198 (76.26%), Query Frame = 1 
Query:   10 RGGGYGLDAELALKAAAKYDFEGERTAQEWMEAVTGVKFEGSFASSLKDGTLLCQLINAIKPGTIKRINSSKMPFKQMENISNFLKACRTLGVAEYSLFETVDLFEEKDVGLVIRCLFALGSAVQSSTPEFAGPHLGAKPHTANKREFTAEQMRQARLDTTMTKAMQGSAAVMERLPIVKTGITAGAEYAGIGDTSSM 603
            RG GYGLDAELA +  AKYD   E  A+ W+EAVTG +  G F  +L+DG ++C+L+N IKPG +++IN S+MPFKQMENISNFLK+CR +GVAE+SLFETVDL+E KD+GLV+RC+FALGSAVQ + PE+ GP LGAKPH  NKR F  EQ +QA+++ + +K   GSA  MER  I K GI  GAE AG GDT+++
Sbjct:    7 RGAGYGLDAELARQREAKYDHSAEDQARAWIEAVTGERVVGPFGDALRDGVVICKLVNTIKPGAVRKINESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLYEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQENKRIFNEEQKQQAKVNASFSKLGMGSAHSMERSQISKPGICFGAENAGTGDTTTV 204
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BLAST of jgi.p|Trimin1|160951 vs. uniprot
Match: A0A6H5L3X7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3X7_9PHAE)

HSP 1 Score: 229 bits (583), Expect = 1.210e-67
Identity = 117/197 (59.39%), Postives = 142/197 (72.08%), Query Frame = 1 
Query:    7 GRGGGYGLDAELALKAAAKYDFEGERTAQEWMEAVTGVKFEGSFASSLKDGTLLCQLINAIKPGTIKRINSSKMPFKQMENISNFLKACRTLGVAEYSLFETVDLFEEKDVGLVIRCLFALGSAVQSSTPEFAGPHLGAKPHTANKREFTAEQMRQARLDTT--MTKAMQGSAAVMERLPIVKTGITAGAEYAGIGD 591
            GRGGGYGLDAELA +  A YD      AQEW+E VTG +F   F   LKDG  LC LIN IKPG ++R+N S+MPFKQMEN+SNFLKACR +GVAE+SLFETVDL+E KD+GLV+RCL ALG  VQ+S PE+ GP LG K   ANKRE+T EQ +Q   +++  M+  + GS+  MER  I+KTG T GA  +G GD
Sbjct:  341 GRGGGYGLDAELAARREANYDXXXXXXAQEWIEDVTGERFAEGFGEELKDGRKLCLLINQIKPGAVRRVNDSRMPFKQMENVSNFLKACRAVGVAEHSLFETVDLYEGKDLGLVVRCLHALGQTVQNSCPEYNGPRLGIKQTEANKREWTEEQQQQQLRNSSGAMSNLLAGSSKTMERATILKTGATFGAAQSGTGD 537
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BLAST of jgi.p|Trimin1|160951 vs. uniprot
Match: A0A2D4CAP3_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAP3_PYTIN)

HSP 1 Score: 200 bits (509), Expect = 1.180e-58
Identity = 108/190 (56.84%), Postives = 134/190 (70.53%), Query Frame = 1 
Query:   10 RGGGYGLDAELALKAAAKYDFEGERTAQEWMEAVTGVKFEGSFASSLKDGTLLCQLINAIKPGTIKRINS-SKMPFKQMENISNFLKACRTLGVAEYSLFETVDLFEEKDVGLVIRCLFALGSAVQSSTPEFAGPHLGAKPHTANKREFTAEQMRQARLDTTMTKAMQGSAAVMERLPIVKTG-ITAGAE 573
            RGGGYGLDAELA +AA KYD+E E  A++W+EA+TG +   SF   L+DG +LC+L N I PG I+RI + SKMPFK MEN+S FLKACRT+GV EY LFETVDLFE K +GLV+RCL ALG AVQ + P F GP LG K    N+R+FT EQ+ QAR   ++     GS   MERL + +   +T GA+
Sbjct:    9 RGGGYGLDAELAQRAAEKYDYEMEDEARQWIEAITGREIGASFGEGLRDGVILCELANKIHPGVIRRIETKSKMPFKLMENVSAFLKACRTIGVNEYELFETVDLFELKXLGLVVRCLHALGRAVQKNYPSFNGPTLGVKEAAKNERQFTEEQIAQARNAPSLLSL--GSMRTMERLDVSRANDVTFGAD 196
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BLAST of jgi.p|Trimin1|160951 vs. uniprot
Match: K3WZS5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZS5_GLOUD)

HSP 1 Score: 196 bits (499), Expect = 1.290e-55
Identity = 103/192 (53.65%), Postives = 135/192 (70.31%), Query Frame = 1 
Query:   10 RGGGYGLDAELALKAAAKYDFEGERTAQEWMEAVTGVKFEGSFASSLKDGTLLCQLINAIKPGTIKRINS-SKMPFKQMENISNFLKACRTLGVAEYSLFETVDLFEEKDVGLVIRCLFALGSAVQSSTPEFAGPHLGAKPHTANKREFTAEQMRQARLDTTMTKAMQGSAAVMERLPIVK-TGITAGAEYA 579
            RGGGYGLDAELA +AA +YD+E E  A+ W+EAV+G+     F   L+DG +LC L+N I P  +KRI + SKMPFK MEN+S+FL+ACRT+GV+E+ LFETVDLFE KD+G V+RC+FALG AVQ + P+F GP LG K    N+R FT E++ +AR   ++     GS   MERL + +   +T GAE A
Sbjct:    9 RGGGYGLDAELARRAAERYDYEMEDEARAWIEAVSGMAIGDEFGEGLRDGVILCTLVNKIHPDIVKRIETKSKMPFKLMENVSSFLRACRTMGVSEFDLFETVDLFELKDLGHVVRCIFALGRAVQKTYPDFNGPTLGVKESVKNERTFTEEKLNEARAAPSLVNL--GSFRTMERLDVSRGNSVTFGAEAA 198
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BLAST of jgi.p|Trimin1|160951 vs. uniprot
Match: A0A7S1U3T7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3T7_9STRA)

HSP 1 Score: 185 bits (470), Expect = 1.340e-54
Identity = 97/168 (57.74%), Postives = 121/168 (72.02%), Query Frame = 1 
Query:   88 AQEWMEAVTGVKFEGSFASSLKDGTLLCQLINAIKPGTIKRINSSKMPFKQMENISNFLKACRTLGVAEYSLFETVDLFEEKDVGLVIRCLFALGSAVQSSTPEFAGPHLGAKPHTANKREFTAEQMRQARLDTTM-TKAMQGSAAVMERLPIVKTGITAGAEYAGIG 588
            AQ+W+E +TG  F G F  SLKDG LLC  INAIKPGTI+R+N+SK+PFKQMEN+S FL++CRTLGVAE+ LFETVDL+E KD+GLV++C+ ALG AV+S  P ++GP LG K  T N+R FTAEQ+   R +  M TK   GSAA MER  +     T+G    G G
Sbjct:    2 AQQWIEELTGEAFPGGFGESLKDGRLLCLTINAIKPGTIRRVNASKLPFKQMENVSTFLRSCRTLGVAEHDLFETVDLYELKDLGLVVQCIHALGRAVRS-LPGYSGPTLGPKEATKNQRRFTAEQLSAQRANAAMATKLTMGSAATMERSEVHYFDATSGNRAVGAG 168
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BLAST of jgi.p|Trimin1|160951 vs. uniprot
Match: A0A5D6XYZ9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYZ9_9STRA)

HSP 1 Score: 190 bits (483), Expect = 1.400e-53
Identity = 102/190 (53.68%), Postives = 130/190 (68.42%), Query Frame = 1 
Query:   10 RGGGYGLDAELALKAAAKYDFEGERTAQEWMEAVTGVKFEGSFASSLKDGTLLCQLINAIKPGTIKRINS-SKMPFKQMENISNFLKACRTLGVAEYSLFETVDLFEEKDVGLVIRCLFALGSAVQSSTPEFAGPHLGAKPHTANKREFTAEQMRQARLDTTMTKAMQGSAAVMERLPIVKTG-ITAGAE 573
            RGGGYGLDAELA +AA +YD+E E  A++W+EAV        F   L+DG +LC L+NAI PG + R+ + SKMPFK MEN+S FL+ACR +GV E+ LFETVDLFE KD+G V+RC+FALG AVQ + P+FAGP LG K    N+R FT E++ +AR    +     GS   M RL I +T  +T GAE
Sbjct:    9 RGGGYGLDAELARRAAERYDYEMEDEARDWIEAVAHKDIGEDFGEGLRDGVVLCALVNAIHPGIVPRVETKSKMPFKLMENVSAFLRACRKIGVNEFDLFETVDLFELKDLGHVVRCIFALGRAVQKNYPDFAGPALGVKEAVKNERTFTEEKLNEARNAPALVNL--GSLRTMARLDIARTNSVTFGAE 196
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BLAST of jgi.p|Trimin1|160951 vs. uniprot
Match: A0A8K1CMC3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMC3_PYTOL)

HSP 1 Score: 193 bits (491), Expect = 2.020e-53
Identity = 99/190 (52.11%), Postives = 133/190 (70.00%), Query Frame = 1 
Query:   10 RGGGYGLDAELALKAAAKYDFEGERTAQEWMEAVTGVKFEGSFASSLKDGTLLCQLINAIKPGTIKRINS-SKMPFKQMENISNFLKACRTLGVAEYSLFETVDLFEEKDVGLVIRCLFALGSAVQSSTPEFAGPHLGAKPHTANKREFTAEQMRQARLDTTMTKAMQGSAAVMERLPIVKTG-ITAGAE 573
            RGGGYGLDAELA +AA +YD++ E  A+ W+E +TG++    F   L+DG +LC+L+N I PG +KR+ + SKMPFK MEN+S FL+ACR +GV E+ LFETVDLFE KD+GLV+RC+ ALG A Q + P+F GP LG K  + N+R+F+ EQ+ +AR     +   QGS   MER  + K   +T GAE
Sbjct:    8 RGGGYGLDAELAKRAAERYDYDLEDEARYWVEEITGMEIGDDFGEGLRDGVILCELVNKIHPGVVKRVETKSKMPFKLMENVSGFLRACRAMGVNEFELFETVDLFELKDLGLVVRCIHALGRATQKNYPDFKGPTLGVKESSKNERQFSEEQLAEAR--NAPSFIAQGSVRTMERADVRKANDLTFGAE 195
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BLAST of jgi.p|Trimin1|160951 vs. uniprot
Match: A0A024G6R3_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G6R3_9STRA)

HSP 1 Score: 188 bits (478), Expect = 3.320e-53
Identity = 99/192 (51.56%), Postives = 133/192 (69.27%), Query Frame = 1 
Query:   10 RGGGYGLDAELALKAAAKYDFEGERTAQEWMEAVTGVKFEGSFASSLKDGTLLCQLINAIKPGTIKRIN-SSKMPFKQMENISNFLKACRTLGVAEYSLFETVDLFEEKDVGLVIRCLFALGSAVQSSTPEFAGPHLGAKPHTANKREFTAEQMRQARLDTTMTKAMQGSAAVMERLPIVKTG-ITAGAEYA 579
            RGGGYGLDAELA +A  +YD+  E+ AQ+W+E++TG++   SF   LKDG +LC L+N I PG + RI   SK+ F+ MEN+SNFLKACRT+GV+E+ LFETVDLFE KD+GLV+RCL ALG AVQ +   F GP LG K    N+R F+ +++ +A    ++     GS   MERL I ++  +T GA+ A
Sbjct:    9 RGGGYGLDAELAQRATERYDYGMEKDAQDWVESITGLQIGDSFGEGLKDGVILCNLVNKIHPGIVPRIEVKSKIKFRLMENVSNFLKACRTIGVSEFDLFETVDLFELKDLGLVVRCLHALGRAVQKNYAHFDGPKLGVKESVKNERHFSKKKILEAASAPSLISL--GSLRTMERLDISRSNDVTFGADVA 198
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|160951 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZHQ8_9STRA3.720e-164100.00Calponin homology domain-containing protein n=1 Ta... [more]
A0A836CGB8_9STRA1.380e-10174.51Calponin homology domain-containing protein n=1 Ta... [more]
D7FJ16_ECTSI2.290e-7660.10Calponin-homology (CH) domain-containing protein n... [more]
A0A6H5L3X7_9PHAE1.210e-6759.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2D4CAP3_PYTIN1.180e-5856.84Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
K3WZS5_GLOUD1.290e-5553.65Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S1U3T7_9STRA1.340e-5457.74Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A5D6XYZ9_9STRA1.400e-5353.68Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A8K1CMC3_PYTOL2.020e-5352.11Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024G6R3_9STRA3.320e-5351.56Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_15contigContig_15:1243115..1246810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|160951|e_gw1.15.232.1
BRITEko00000,ko04131
KEGG koko:K20526
GOsGO:0000278,GO:0000281,GO:0000910,GO:0001300,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005938,GO:0006996,GO:0007010,GO:0007015,GO:0007049,GO:0007568,GO:0007569,GO:0008092,GO:0008150,GO:0009987,GO:0015629,GO:0016043,GO:0022402,GO:0030029,GO:0030036,GO:0030479,GO:0030674,GO:0030863,GO:0030864,GO:0032502,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0044877,GO:0048869,GO:0051015,GO:0051301,GO:0051764,GO:0060090,GO:0061640,GO:0061645,GO:0071840,GO:0071944,GO:0097435,GO:0099568,GO:1903047
Preferred nameSCP1
Descriptionactin binding
COG categoryZ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5199@1|root,KOG2046@2759|Eukaryota
Evalue3.76e-77
Seed ortholog2880.D7FJ16
Hectar predicted targeting categoryother localisation
TranscriptId161273
TrackFilteredModels1
ProteinId160951
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160951gene_3997Tribonema minus UTEX_B_3156 geneContig_15 1243115..1246810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160951Trimin1|160951|e_gw1.15.232.1Tribonema minus UTEX_B_3156 polypeptideContig_15 1243115..1246810 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3997_3exon_3997_3Tribonema minus UTEX_B_3156 exonContig_15 1243115..1243369 -
exon_3997_2exon_3997_2Tribonema minus UTEX_B_3156 exonContig_15 1244714..1245003 -
exon_3997_1exon_3997_1Tribonema minus UTEX_B_3156 exonContig_15 1246552..1246810 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3997CDS_3997Tribonema minus UTEX_B_3156 CDSContig_15 1246552..1246810 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3997 ID=mRNA_3997|Name=jgi.p|Trimin1|160951|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=804bp|location=Sequence derived from alignment at Contig_15:1243115..1246810- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGGGCGGGGAGGCGGGTATGGCCTGGATGCGGAGCTGGCCCTCAA
GGCAGCTGCCAAGTACGATTTCGAGGGGGAGAGGACGGCGCAGGAGTGGA
TGGAGGCAGTGACGGGAGTGAAGTTTGAGGGCAGCTTTGCGTCGTCGCTG
AAGGACGGGACTCTGCTGTGCCAGCTGATCAATGCCATCAAGCCCGGCAC
CATCAAGAGGATTAACTCCTCCAAGATGCCCTTCAAGCAGATGGAGAACA
TCTCGAACTTCCTCAAGGCGTGCCGCACGCTCGGCGTCGCCGAGTACTCC
CTCTTCGAGACGGTCGACCTCTTTGAGGAGAAGGACGTCGGCCTCGTCAT
CCGCTGCCTCTTTGCGCTGGGCAGCGCGGTGCAGTCGTCGACGCCCGAGT
TTGCGGGCCCGCACCTCGGCGCTAAGCCGCACACCGCCAACAAGCGCGAG
TTCACGGCGGAGCAGATGCGCCAGGCGCGCCTCGACACGACCATGACGAA
GGCCATGCAGGGCAGCGCCGCGGTGATGGAGCGCCTGCCGATAGTCAAGA
CGGGCATCACGGCGGGCGCGGAGTACGCGGGCATCGGCGACACATCGTCC
ATGTGCATGACGAGCATGGGCAGCTACGGCATCATGGACAGGAGCGAGGT
GGTGCGCACCGGCATCACCATGGGCGCCGACAGCGCCGGCCCGTCCGCCG
ACGCCAACGCCGTGCCGCACAGCTCCATGGGCTCCGCGGGCATCATGGAG
GTGAGCAGAGAGCGGGGGGGGGCGGGGGGGGGATGTGCAAGTACACCTGG
TTAG
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protein sequence of jgi.p|Trimin1|160951

>Trimin1|160951|e_gw1.15.232.1 ID=Trimin1|160951|e_gw1.15.232.1|Name=jgi.p|Trimin1|160951|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=268bp
MVGRGGGYGLDAELALKAAAKYDFEGERTAQEWMEAVTGVKFEGSFASSL
KDGTLLCQLINAIKPGTIKRINSSKMPFKQMENISNFLKACRTLGVAEYS
LFETVDLFEEKDVGLVIRCLFALGSAVQSSTPEFAGPHLGAKPHTANKRE
FTAEQMRQARLDTTMTKAMQGSAAVMERLPIVKTGITAGAEYAGIGDTSS
MCMTSMGSYGIMDRSEVVRTGITMGADSAGPSADANAVPHSSMGSAGIME
VSRERGGAGGGCASTPG*
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mRNA from alignment at Contig_15:1243115..1246810-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3997 ID=mRNA_3997|Name=jgi.p|Trimin1|160951|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3696bp|location=Sequence derived from alignment at Contig_15:1243115..1246810- (Tribonema minus UTEX_B_3156 )
ATGGTGGGGCGGGGAGGCGGGTATGGCCTGGATGCGGAGCTGGCCCTCAA
GGCAGCTGCCAAGTACGATTTCGAGGGGGAGAGGACGGCGCAGGAGTGGA
TGGAGGCAGTGACGGGAGTGAAGTTTGAGGGCAGCTTTGCGTCGTCGCTG
AAGGACGGGACTCTGCTGTGCCAGCTGATCAATGCCATCAAGCCCGGCAC
CATCAAGAGGATTAACTCCTCCAAGATGCCCTTCAAGCAGATGGAGAACA
TCTCGAACTGTGAGTGCCACGACGTCAAGCATACATGCAGTGTAGCAGTT
GCATGCATCGATAGCATTATTCTACCACTCAGCGTGATAATTTTGTGAGT
GTGGAAGCCCGCGGATTAAGACAATCTAGCGCCAATTACAGCAGACAACC
TTGGCACTTCCACCGCCGTTGAGCGGAGCAGTTGCCCGCATCCTCAACAT
CGGACAGGCGACCCGAGTATCGTGCACTGCCACAGGCTGTAGAAGGAGCG
CGCGGCGCACGCACGCGTGGGGCCAACGGCTTGAGCACTTTGCTTGAGAC
ACCTGCCTCGATGTACAGCGCTGCGCAGTTGCGCTGGCTGCGCTGAGCGC
TGTCTACGCGCTGTTGAGCGCTGCCGCATTTTGCGGGACCGCCAGCTGTG
TTTGTGTATGCGAGGCAGAGTGTGTGGCTTTGGCATCTGCGATTTCGCGA
CATGAGCGGAGATTCTCTAATGAGATTAATTGCTGCGGCGCAACGGCCGT
GCAGGCAGGCCGCCGCTCTGCGCGCACGCATCGCGATTCGATTGTCTGTG
CCGAACCGCTGCGCATCGCGCGTCCAGACTTCTTTTCGAAGCACTGCATA
CAGTCCTAACGTCTGTCAATACGGCAGTACAGGCGGTGCACCGTTGCGAT
GCCGAGCGCTGGGGAGACATGTGCAGTGGTGATTTTGCTGTTGAAGTTGC
GAACGCTGTGCCGTCAGGGGACAGCGCCCGCTGATGCGGCGCTTCTGCCG
TGCCGCATTCTGGAGTTGTCATCTGAGGCGGCCTCGGCGATGAGCGCCAT
GACACGCAGTACGCTCATTCAGACGCCATGTTGGCCGGCGGCCCTTCTCG
CGTGTTTATTATTCACCAAACACAACGACACGTGGCGTCTCGCTTGTTGT
CTACATAGGCCTCATCGCTGTGCTGCTGCGTGGGGCGTCGTGGCCTCGCA
CTGCAGCGCGCTGTCAATCAGCACGGAGAACGCGGCGCAGCGCCGCGGCA
CGTGGTCACGCGCCGCCGCTGCCCTGCCGGCGCATTGCACTGTGGCATTC
GTCATTACCGCTGGCGCCGTACTCTCAGACGTGTACGTCTGTACTCTTTG
TGTACCCGCGCCACTGACGTTTTGTGTATCCGCCGGTGCATACCGCCGTG
CACAGTTCACTGTATTATGACGCTGTACTCTGTACTCCTCGTTCACCTGC
ACCGCGCTGCTCCGCCGATGCAGCACTCTGCACAGAACGCATCGCTGCTG
GCGCTTCACTCTGCCGCTGCACGCGGTACATTTGGCATGCGCGCAGCAGT
GCGGCTCTGCCGGTGCACACCGCCCCTGCAGAGTACAGTCTGCCACTGGT
GCTGTGCTCGCCGCTGTGCTCTGTGCATCCAGTTCACCTGCGCCGTGCTG
CAGCGCGCAGCACAGGACCCCTGGCGCATAGTCTGATGCTGTACTCTGCA
ACTGCCCGTGTACCCTACACGCATGCAGTACTCCGGGCGCGCTGCGGATC
CTGTACTCTTGAAATTGTACTGTGTACTCCCCCCCCTGGTACCCCCCCCC
AACGCAGTCCTCAAGGCGTGCCGCACGCTCGGCGTCGCCGAGTACTCCCT
CTTCGAGACGGTCGACCTCTTTGAGGAGAAGGACGTCGGCCTCGTCATCC
GCTGCCTCTTTGCGCTGGGCAGCGCGGTGCAGTCGTCGACGCCCGAGTTT
GCGGGCCCGCACCTCGGCGCTAAGCCGCACACCGCCAACAAGCGCGAGTT
CACGGCGGAGCAGATGCGCCAGGCGCGCCTCGACACGACCATGACGAAGG
CCATGCAGGGCAGCGCCGCGGTGATGGAGCGCCTGCCGATAGTCAAGGTG
AGAGCGGCGGCGCAAGCGGCGGCGGTGCCGGTGAACTGAGGCCAGAATTC
GTCACCTGGGGCTGTGCAATCTTTTCATGCGTTTCCATGATGCATCAAAG
CGCAGTGGCTACTTTGCACAGCCTCGACACGACCATTACCAAGGCCATGC
AGGGCAGCGCCGCGGTGATGGAGCGCCTGCCCATCGTCAAGGTGAGAGGC
GGCCTAACCCTAACCCCAACTCTAACCGTAACCCTAACCCAGCGGCAGCG
CCAATGAACCAAGACAGGACTCATCACCTAGAGCTCTACAATATTTTCAT
TCGTGTCCACGATGCATCAGAGCACACTGGCTACCTCGCACAGTGGCTGC
TTCACCAGGTGATCAGGTGATCACAGACATTATGTTAGCTGAGGTGGCCC
TTTGTAGATTGTTCCTTGGTGTCGCAGAGGGTCAGCGGCGGGCGGCTGCG
CGGGACGTGCGTTTGCTGCCGCCACTACGAAAACTGGGCACCGCACAGGC
AGGAGCGTGCGTGTGCCGCATACTGCTCCCACTCAAGCGCATAGATTGTT
GTGGTCGGGGACTTTAGCCGCAACTGCAAGACGGGCATCACGGCAGCCTC
TCAGTCAGTGACTGCAGTAGCAGTATCAAAGTGTCACTCACATCAGGCGG
TGGTTGCAGATCACGCAAGGCGTAATTGTAAGTGCCGTGCTGCGCGCGCG
CAGACGGGCATCACGGCGGGGCTCTCAGTCACTACAGGCGTATCTGTAGT
GACTGCATCAAGCGCGCCTATCAAAAGCGCGCCGCAACGGTAATCGCAAC
CGCTGCGCGGCGCGCACGCAGACGGTCACGGCTGCCTCTCAATCTGTCCA
TGCACCATGCATCGGACGTAGCTGTAACTGTAACTGCTGTGCGCCGTGCG
CGCAGATGGGCTTCACGGCGGCGCTCTAAATCACTGCAGCCGTATGTGTA
GTGACTGTAATTAGGCGCGACCATTGAAGTGATATACATAATATACTTTT
CACAGCGCATAACTGTAACTGTAACTGCTGAGACGGGCATCACGGCGGGC
GCGGAGTACGTGGGCATTGGCGACACGGGCCTGTAATCAGGCGCAAGTAT
CAAAGTTTGCGTACCTTCAATCACCCACGACAGCCTGCCAATCAGTACCT
GTGACGACAACACTCAGGCATAACTTCAACTTCAACTCCAACTGCTTATG
CCGCGTGCGCGCGGACGGGCATCACGGCGGCGCTCTCAATCACTGCAGCC
GTGTGTGTAGTGACTGTAATTTGGCGCAACCATTGAAGTCACACTTTTTT
ACAGCGCATAACTGTAACTGTAACTGCTGTGCCGCGCGCAGACGGGCATC
ACGGCGGGCGCGGAGTACGCGGGCATCGGCGACACATCGTCCATGTGCAT
GACGAGCATGGGCAGCTACGGCATCATGGACAGGAGCGAGGTGGTGCGCA
CCGGCATCACCATGGGCGCCGACAGCGCCGGCCCGTCCGCCGACGCCAAC
GCCGTGCCGCACAGCTCCATGGGCTCCGCGGGCATCATGGAGGTGAGCAG
AGAGCGGGGGGGGGCGGGGGGGGGATGTGCAAGTACACCTGGTTAG
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Coding sequence (CDS) from alignment at Contig_15:1243115..1246810-

>mRNA_3997 ID=mRNA_3997|Name=jgi.p|Trimin1|160951|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=804bp|location=Sequence derived from alignment at Contig_15:1243115..1246810- (Tribonema minus UTEX_B_3156 )
ATGGTGGGGCGGGGAGGCGGGTATGGCCTGGATGCGGAGCTGGCCCTCAA
GGCAGCTGCCAAGTACGATTTCGAGGGGGAGAGGACGGCGCAGGAGTGGA
TGGAGGCAGTGACGGGAGTGAAGTTTGAGGGCAGCTTTGCGTCGTCGCTG
AAGGACGGGACTCTGCTGTGCCAGCTGATCAATGCCATCAAGCCCGGCAC
CATCAAGAGGATTAACTCCTCCAAGATGCCCTTCAAGCAGATGGAGAACA
TCTCGAACTTCCTCAAGGCGTGCCGCACGCTCGGCGTCGCCGAGTACTCC
CTCTTCGAGACGGTCGACCTCTTTGAGGAGAAGGACGTCGGCCTCGTCAT
CCGCTGCCTCTTTGCGCTGGGCAGCGCGGTGCAGTCGTCGACGCCCGAGT
TTGCGGGCCCGCACCTCGGCGCTAAGCCGCACACCGCCAACAAGCGCGAG
TTCACGGCGGAGCAGATGCGCCAGGCGCGCCTCGACACGACCATGACGAA
GGCCATGCAGGGCAGCGCCGCGGTGATGGAGCGCCTGCCGATAGTCAAGA
CGGGCATCACGGCGGGCGCGGAGTACGCGGGCATCGGCGACACATCGTCC
ATGTGCATGACGAGCATGGGCAGCTACGGCATCATGGACAGGAGCGAGGT
GGTGCGCACCGGCATCACCATGGGCGCCGACAGCGCCGGCCCGTCCGCCG
ACGCCAACGCCGTGCCGCACAGCTCCATGGGCTCCGCGGGCATCATGGAG
GTGAGCAGAGAGCGGGGGGGGGCGGGGGGGGGATGTGCAAGTACACCTGG
TTAG
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