mRNA_3994 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|347756 vs. uniprot
Match: A0A835Z8V5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8V5_9STRA) HSP 1 Score: 1218 bits (3152), Expect = 0.000e+0 Identity = 853/853 (100.00%), Postives = 853/853 (100.00%), Query Frame = 1
Query: 1 MHQAQQQQVGGGEAPEAVMAQPQQQAEGLQAFWNPSARLSPSTSADDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQWVGYASEQQAXXXXXXXXXXLQHNLYLQYHQPQQMPPPPMGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXWPAKIGGMISHRGGNGKGRMASASPGTVFSRFGNRKVDNGGGGGAGYEHRAITASVSADSLHAGMAGLSLGGGSGLAAGYAPPPIYAQHSFPGTFGAPLAPPPQPQPPSTAHLGSAAPSTTTSSSIIGVGGIPLTFSAEAMSRVLIPNAKIGAVIGKGGAIVKHIRECSGARVTISDAGDDAGWAGGGGPGGGERLLHIIGSFFAVVTAFGAILAHAETPSNGDPLPGLAALVASGMLSGEATSAAALEAALPLPPSGFRMLISSAKAGALIGRAGATIKAIRDASGARIDISSHLAGGLPVPPGXXXXXXXXXXXXXXTPAAIAIALSMDRVVAVSGPFTACVRAHHLIVASRMEPTVLQMXXXXXXXXXPPIPLSLSMPAMSGSNVTSSPTTSGNTTPGYLMSRVGTGSFDGFGNPHVIAHSSSSFEYMDGGGXAAPLPAGAYYALPXGGSQQVEELSNLRGGAPKAEAKAPGXXXXXXXXXXXXXXXXXXXQGXXXXXXXXXXXXXXXXXXXXXXXSMRLTVEGXXXXXXXXXXXXXXSHTQARQQRSGITTVCTAQYGCSAXXXXXXGEAGDSRGKVPSGELSDQELERNIADIMHLSGALLEAVDAHGGGSGSNAQLMDPAAPADEQPQDRGQEKGSGGXXXXXXRGGAPLQLSITGTAESVQLAEYLVQTRLARSAAXXXXXXXQPALSPALH 2559
MHQAQQQQVGGGEAPEAVMAQPQQQAEGLQAFWNPSARLSPSTSADDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQWVGYASEQQAXXXXXXXXXXLQHNLYLQYHQPQQMPPPPMGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXWPAKIGGMISHRGGNGKGRMASASPGTVFSRFGNRKVDNGGGGGAGYEHRAITASVSADSLHAGMAGLSLGGGSGLAAGYAPPPIYAQHSFPGTFGAPLAPPPQPQPPSTAHLGSAAPSTTTSSSIIGVGGIPLTFSAEAMSRVLIPNAKIGAVIGKGGAIVKHIRECSGARVTISDAGDDAGWAGGGGPGGGERLLHIIGSFFAVVTAFGAILAHAETPSNGDPLPGLAALVASGMLSGEATSAAALEAALPLPPSGFRMLISSAKAGALIGRAGATIKAIRDASGARIDISSHLAGGLPVPPGXXXXXXXXXXXXXXTPAAIAIALSMDRVVAVSGPFTACVRAHHLIVASRMEPTVLQMXXXXXXXXXPPIPLSLSMPAMSGSNVTSSPTTSGNTTPGYLMSRVGTGSFDGFGNPHVIAHSSSSFEYMDGGGXAAPLPAGAYYALPXGGSQQVEELSNLRGGAPKAEAKAPGXXXXXXXXXXXXXXXXXXXQGXXXXXXXXXXXXXXXXXXXXXXXSMRLTVEGXXXXXXXXXXXXXXSHTQARQQRSGITTVCTAQYGCSAXXXXXXGEAGDSRGKVPSGELSDQELERNIADIMHLSGALLEAVDAHGGGSGSNAQLMDPAAPADEQPQDRGQEKGSGGXXXXXXRGGAPLQLSITGTAESVQLAEYLVQTRLARSAAXXXXXXXQPALSPALH
Sbjct: 1 MHQAQQQQVGGGEAPEAVMAQPQQQAEGLQAFWNPSARLSPSTSADDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQWVGYASEQQAXXXXXXXXXXLQHNLYLQYHQPQQMPPPPMGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXWPAKIGGMISHRGGNGKGRMASASPGTVFSRFGNRKVDNGGGGGAGYEHRAITASVSADSLHAGMAGLSLGGGSGLAAGYAPPPIYAQHSFPGTFGAPLAPPPQPQPPSTAHLGSAAPSTTTSSSIIGVGGIPLTFSAEAMSRVLIPNAKIGAVIGKGGAIVKHIRECSGARVTISDAGDDAGWAGGGGPGGGERLLHIIGSFFAVVTAFGAILAHAETPSNGDPLPGLAALVASGMLSGEATSAAALEAALPLPPSGFRMLISSAKAGALIGRAGATIKAIRDASGARIDISSHLAGGLPVPPGXXXXXXXXXXXXXXTPAAIAIALSMDRVVAVSGPFTACVRAHHLIVASRMEPTVLQMXXXXXXXXXPPIPLSLSMPAMSGSNVTSSPTTSGNTTPGYLMSRVGTGSFDGFGNPHVIAHSSSSFEYMDGGGXAAPLPAGAYYALPXGGSQQVEELSNLRGGAPKAEAKAPGXXXXXXXXXXXXXXXXXXXQGXXXXXXXXXXXXXXXXXXXXXXXSMRLTVEGXXXXXXXXXXXXXXSHTQARQQRSGITTVCTAQYGCSAXXXXXXGEAGDSRGKVPSGELSDQELERNIADIMHLSGALLEAVDAHGGGSGSNAQLMDPAAPADEQPQDRGQEKGSGGXXXXXXRGGAPLQLSITGTAESVQLAEYLVQTRLARSAAXXXXXXXQPALSPALH 853
BLAST of jgi.p|Trimin1|347756 vs. uniprot
Match: A0A836CIH4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIH4_9STRA) HSP 1 Score: 313 bits (803), Expect = 2.380e-93 Identity = 175/226 (77.43%), Postives = 192/226 (84.96%), Query Frame = 1
Query: 871 SAEAMSRVLIPNAKIGAVIGKGGAIVKHIRECSGARVTISDAGDDAGWAGGGGPGGGERLLHIIGSFFAVVTAFGAILAHAETPSNGDPLPGLAALVASGMLSGEATSAAALEAALPLPPSGFRMLISSAKAGALIGRAGATIKAIRDASGARIDISSHLAGGLPVPPGXXXXXXXXXXXXXXTPAAIAIALSMDRVVAVSGPFTACVRAHHLIVASRMEPTVLQM 1548
S+EA+SRVLIPNAKIGAVIGKGGAIVKHIRECSGARVTISDAGDDAGWAGGGGPGGGERL+H++GSF AVV A GAILAHAETPSNG+PLPGLA LVA G+LSGEA AAA++AA+ +PPS FRMLI +AKAGALIGR G TIKAIRDASGARI+ISSHLAG LP PPG TPAAIA+ALS DRVV+VSGPF ACVRAHHLIVAS M+ V+ M
Sbjct: 103 SSEAVSRVLIPNAKIGAVIGKGGAIVKHIRECSGARVTISDAGDDAGWAGGGGPGGGERLVHLVGSFGAVVAALGAILAHAETPSNGEPLPGLAQLVAGGLLSGEA--AAAVDAAITVPPSAFRMLIPNAKAGALIGRGGTTIKAIRDASGARIEISSHLAGNLPAPPGGAGAAGPP------TPAAIAVALSADRVVSVSGPFAACVRAHHLIVASMMDQGVMAM 320
BLAST of jgi.p|Trimin1|347756 vs. uniprot
Match: D8LKQ4_ECTSI (Poly(Rc) binding protien (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ4_ECTSI) HSP 1 Score: 114 bits (286), Expect = 4.820e-24 Identity = 84/178 (47.19%), Postives = 103/178 (57.87%), Query Frame = 1
Query: 877 EAMSRVLIPNAKIGAVIGKGGAIVKHIRECSGARVTISDA-----GDDAGWAGGGGPGGGERLLHIIGSFFAVVTAFGAILAHAETPS-NGDPLPGLAALVASGMLSGEATSAAALEAALPLPPSGFRMLISSAKAGALIGRAGATIKAIRDASGARIDISSH------LAGGLPVPP 1374
E +SRVLIPN KIGAVIGKGGAI+KHIRE SGA+VTISD+ GD +R++ G+F +V AF IL+HA + DP+ GLA G+ A + FR+LI + KAG LIGR G TIKAIR+ SGARI+ISSH + G LP PP
Sbjct: 100 ETVSRVLIPNCKIGAVIGKGGAIIKHIREVSGAKVTISDSCTGLHGDSD-----------DRMVTAAGTFNSVQLAFTHILSHAGAVGPDADPVMGLAG--------GDPDCVA----------NSFRLLIPNVKAGGLIGRGGCTIKAIREQSGARIEISSHAFHFHPVHGPLPAPP 248
BLAST of jgi.p|Trimin1|347756 vs. uniprot
Match: A0A8J2T296_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T296_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 8.530e-9 Identity = 51/154 (33.12%), Postives = 73/154 (47.40%), Query Frame = 1
Query: 889 RVLIPNAKIGAVIGKGGAIVKHIRECSGARVTISDAGDDAGWAGGGGPGGGERLLHIIGSFFAVVTAFGAILAHAETPSNGDPLPGLAALVASGMLSGEATSAAALEAALPLPPSGFR--MLISSAKAGALIGRAGATIKAIRDASGARIDISS 1344
++L+P+A G VIGKGGA+V HIR+ SG +V + ++ AGG GG ER++ + G F +V AF +L H DPL PP +L+ K G LIGR GA+I +R SGA + + +
Sbjct: 102 KLLLPHAACGIVIGKGGAMVSHIRDASGCQVDVQESPAPPPMAGGV-QGGSERIITLSGDFGSVYAAFQMVLQHLAAAQPADPL------------------------LTTRPPGSVEAVVLVPRNKTGGLIGRGGASINRVRQDSGATVKVGA 230
BLAST of jgi.p|Trimin1|347756 vs. uniprot
Match: A0A7I8WC18_9ANNE (DgyrCDS13925 n=2 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8WC18_9ANNE) HSP 1 Score: 67.0 bits (162), Expect = 7.850e-8 Identity = 50/154 (32.47%), Postives = 77/154 (50.00%), Query Frame = 1
Query: 889 RVLIPNAKIGAVIGKGGAIVKHIRECSGARVTISDAGDDAGWAGGGGPGGGERLLHIIGSFFAVVTAFGAILAHAETPSNGDPLPGLAALVASGMLSGEATSAAALEAALPLPPSGFRMLISSAKAGALIGRAGATIKAIRDASGARIDISSHL 1350
R+++ ++G++IGK G VK RE SGA++ ISDA ER++ + GS + AF I E N A ++ALP PP R+++ +++ G+LIG+AGA IK IRDA+GA I ++S +
Sbjct: 114 RMVMQGKEVGSIIGKKGDNVKKYREESGAKINISDASCP------------ERIVTVSGSSEGIYKAFTMICKKFEEDIN----------------------AQHGQSALPKPPVTIRLVVPASQCGSLIGKAGAKIKEIRDATGASIQVASEM 233
BLAST of jgi.p|Trimin1|347756 vs. uniprot
Match: A0A7I8WC90_9ANNE (DgyrCDS13927 n=2 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8WC90_9ANNE) HSP 1 Score: 67.0 bits (162), Expect = 8.330e-8 Identity = 50/154 (32.47%), Postives = 77/154 (50.00%), Query Frame = 1
Query: 889 RVLIPNAKIGAVIGKGGAIVKHIRECSGARVTISDAGDDAGWAGGGGPGGGERLLHIIGSFFAVVTAFGAILAHAETPSNGDPLPGLAALVASGMLSGEATSAAALEAALPLPPSGFRMLISSAKAGALIGRAGATIKAIRDASGARIDISSHL 1350
R+++ ++G++IGK G VK RE SGA++ ISDA ER++ + GS + AF I E N A ++ALP PP R+++ +++ G+LIG+AGA IK IRDA+GA I ++S +
Sbjct: 49 RMVMQGKEVGSIIGKKGDNVKKYREESGAKINISDASCP------------ERIVTVSGSSEGIYKAFTMICKKFEEDIN----------------------AQHGQSALPKPPVTIRLVVPASQCGSLIGKAGAKIKEIRDATGASIQVASEM 168
BLAST of jgi.p|Trimin1|347756 vs. uniprot
Match: A0A0C9TXC3_SPHS4 (Unplaced genomic scaffold SPHSTscaffold_294, whole genome shotgun sequence n=1 Tax=Sphaerobolus stellatus (strain SS14) TaxID=990650 RepID=A0A0C9TXC3_SPHS4) HSP 1 Score: 65.5 bits (158), Expect = 2.380e-7 Identity = 61/190 (32.11%), Postives = 90/190 (47.37%), Query Frame = 1
Query: 796 HLGSAAPSTTTSSSIIGVG-GIPLTFSAEAMSRVLIPNAKIGAVIGKGGAIVKHIRECSGARVTISDAGDDAGWAGGGGPGGGERLLHIIGSFFAVVTAFGAILAHA-ETPSNGDPLPGLAALVASGMLSGEATSAAALEAALPLPPSGFRMLISSAKAGALIGRAGATIKAIRDASGARIDISSHLAGG 1359
L S ST+ + S I G G P + SA+ R LI +IGK GA V IR+ SGARV +S++ PG ER+L++ G AV AFG I+ + P + +PG A+ + +I +++ G++IG+ GA IK I+DASGAR++ S + G
Sbjct: 106 QLSSKVSSTSGNGSNIAAGSGSPNSSSAQIHMRCLIVTQDASIIIGKAGAHVNEIRQKSGARVMVSESI----------PGNPERILNVSGPLDAVSKAFGLIVRRINDEPFDVPSVPGSRAVT-------------------------IKFMIPNSRMGSVIGKGGAKIKEIQDASGARLNASEGMLPG 260
BLAST of jgi.p|Trimin1|347756 vs. uniprot
Match: A0A4D9CYY6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYY6_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 2.780e-7 Identity = 67/225 (29.78%), Postives = 97/225 (43.11%), Query Frame = 1
Query: 847 VGGIPLTFSAEAMSRVLIPNAKIGAVIGKGGAIVKHIRECSGARVTISDAGDDAGWAGGGGPGGGERLLHIIGSFFAVVTAFGAILAHA---ETPSNGDPLPGLAALVASGMLSGEATSAAALEAALPLPPSGFRMLISSAKAGALIGRAGATIKAIRDASGARIDISSHLAGGLPVPPGXXXXXXXXXXXXXXTPAAIAIALSMDRVVAVSGPFTACVRAHHLI 1512
+ + L+ E + +L+P ++IG VIG+GG ++K IRE +G R+ IS A +D RL+ + GS V +A I A E+ G+ GE PP G R++I S+ AG +IG+ GATI IR S ARI + S +A ALSM+RV+ + G AC AH +I
Sbjct: 90 LANLSLSSGLETTTCLLLPASRIGGVIGRGGDVIKGIRELTGTRIHISPAAEDDRDPA-------FRLVTVSGSVQEVCSAVELISRQAGLFESQQGGED--------------GE-----------DYPPPGLRLVIDSSHAGQVIGKKGATINEIRTQSQARIQVLSD------------------------EESAEEGALSMERVILLIGEAEACRLAHKMI 258
BLAST of jgi.p|Trimin1|347756 vs. uniprot
Match: W7TTG5_9STRA (Poly-binding protein 3 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TTG5_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 3.740e-7 Identity = 67/225 (29.78%), Postives = 97/225 (43.11%), Query Frame = 1
Query: 847 VGGIPLTFSAEAMSRVLIPNAKIGAVIGKGGAIVKHIRECSGARVTISDAGDDAGWAGGGGPGGGERLLHIIGSFFAVVTAFGAILAHA---ETPSNGDPLPGLAALVASGMLSGEATSAAALEAALPLPPSGFRMLISSAKAGALIGRAGATIKAIRDASGARIDISSHLAGGLPVPPGXXXXXXXXXXXXXXTPAAIAIALSMDRVVAVSGPFTACVRAHHLI 1512
+ + L+ E + +L+P ++IG VIG+GG ++K IRE +G R+ IS A +D RL+ + GS V +A I A E+ G+ GE PP G R++I S+ AG +IG+ GATI IR S ARI + S +A ALSM+RV+ + G AC AH +I
Sbjct: 193 LANLSLSSGLETTTCLLLPASRIGGVIGRGGDVIKGIRELTGTRIHISPAAEDDRDPA-------FRLVTVSGSVQEVCSAVELISRQAGLFESQQGGED--------------GE-----------DYPPPGLRLVIDSSHAGQVIGKKGATINEIRTQSQARIQVLSD------------------------EESAEEGALSMERVILLIGEAEACRLAHKMI 361
BLAST of jgi.p|Trimin1|347756 vs. uniprot
Match: A0A427XWN8_9TREE (Uncharacterized protein n=1 Tax=Apiotrichum porosum TaxID=105984 RepID=A0A427XWN8_9TREE) HSP 1 Score: 63.2 bits (152), Expect = 1.090e-6 Identity = 51/152 (33.55%), Postives = 74/152 (48.68%), Query Frame = 1
Query: 889 RVLIPNAKIGAVIGKGGAIVKHIRECSGARVTISDAGDDAGWAGGGGPGGGERLLHIIGSFFAVVTAFGAILAHA-ETPSNGDPLPGLAALVASGMLSGEATSAAALEAALPLPPSGFRMLISSAKAGALIGRAGATIKAIRDASGARIDIS 1341
R LI +IG+ GA V IR+ SGARVTIS++ PG ER+L++ G AV AFG I+ + P + +PG A+ + +I +++ G++IGR GA IK I+DASGAR++ S
Sbjct: 96 RALIVTQDASVIIGRSGAHVNEIRDKSGARVTISESI----------PGNPERILNVFGPLDAVSKAFGLIVRRINDEPFDVASVPGSRAVT-------------------------IKFIIPNSRMGSVIGRGGAKIKEIQDASGARLNAS 212 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347756 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_3994 ID=mRNA_3994|Name=jgi.p|Trimin1|347756|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2562bp|location=Sequence derived from alignment at Contig_15:1219924..1226056+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCACCAGGCACAACAGCAGCAGGTAGGAGGAGGAGAGGCGCCGGAGGCback to top protein sequence of jgi.p|Trimin1|347756 >Trimin1|347756|estExt_Genemark1.C_Ctg_150143 ID=Trimin1|347756|estExt_Genemark1.C_Ctg_150143|Name=jgi.p|Trimin1|347756|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=854bp MHQAQQQQVGGGEAPEAVMAQPQQQAEGLQAFWNPSARLSPSTSADDASGback to top mRNA from alignment at Contig_15:1219924..1226056+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_3994 ID=mRNA_3994|Name=jgi.p|Trimin1|347756|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6133bp|location=Sequence derived from alignment at Contig_15:1219924..1226056+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_15:1219924..1226056+ >mRNA_3994 ID=mRNA_3994|Name=jgi.p|Trimin1|347756|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2562bp|location=Sequence derived from alignment at Contig_15:1219924..1226056+ (Tribonema minus UTEX_B_3156 )back to top |